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Gene: Synj2 (synaptojanin 2) Rattus norvegicus

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Symbol:

Synj2

Name:

synaptojanin 2

RGD ID:

69436

Description:

Enables inositol-polyphosphate 5-phosphatase activity; phosphatidylinositol monophosphate phosphatase activity; and protein domain specific binding activity. Involved in inositol phosphate catabolic process and phosphatidylinositol dephosphorylation. Located in axon terminus; cytoplasmic microtubule; and ruffle membrane. Is active in presynapse. Orthologous to human SYNJ2 (synaptojanin 2); PARTICIPATES IN inositol phosphate metabolic pathway; phosphatidylinositol 3-kinase signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

synaptic inositol 1,4,5-trisphosphate 5-phosphatase 2; synaptic inositol-1,4,5-trisphosphate 5-phosphatase 2; synaptojanin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYNJ2 (synaptojanin 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Synj2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Synj2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYNJ2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYNJ2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Synj2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYNJ2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYNJ2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Synj2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Synj2 (synaptojanin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SYNJ2 (synaptojanin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Synj2 (synaptojanin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	INP51	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	INP51	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Synj	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Synj	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	unc-26	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-26	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	INP52	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	INP53	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	synj2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Synj2_v1 ; Synj2_v3 ; Synj2_v2

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	48,923,742 - 49,027,153 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	48,923,737 - 49,038,650 (+)	Ensembl				GRCr8
mRatBN7.2	1	46,518,594 - 46,621,919 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	46,518,709 - 46,633,687 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	47,069,005 - 47,165,022 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	53,056,255 - 53,152,284 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	47,144,430 - 47,240,455 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	46,835,922 - 46,932,544 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	46,835,971 - 46,932,529 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	48,140,566 - 48,236,043 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	40,763,794 - 40,818,491 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	42,211,492 - 42,305,219 (+)	NCBI		Celera
RGSC_v3.1	1	40,766,738 - 40,821,418 (+)	NCBI
Cytogenetic Map	1	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

Meniere's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

Butylbenzyl phthalate (EXP,ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cypermethrin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

flavonoids (EXP)

fluoranthene (ISO)

furan (EXP)

gallic acid (ISO)

genistein (ISO)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

maneb (ISO)

mercury dibromide (ISO)

methamphetamine (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

orphenadrine (EXP)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

raloxifene (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

clathrin coat assembly (ISO,ISS)

inositol phosphate catabolic process (IDA)

lipid metabolic process (IEA)

phosphatidylinositol dephosphorylation (IDA,IEA)

phosphatidylinositol metabolic process (ISO)

receptor-mediated endocytosis (IDA)

synaptic vesicle endocytosis (IBA,ISO)

Cellular Component

axon terminus (IDA)

cytoplasm (IBA,IEA)

cytoplasmic microtubule (IDA)

cytoskeleton (IEA)

membrane (IBA)

membrane raft (IEA)

mitochondrion (IEA)

perinuclear region of cytoplasm (IBA)

plasma membrane (IEA)

presynapse (IBA,IDA,IEA)

ruffle membrane (IDA,ISO)

Molecular Function

hydrolase activity (IEA)

inositol phosphate phosphatase activity (IEA)

inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity (IDA)

inositol-1,4,5-trisphosphate 5-phosphatase activity (IBA,IDA)

nucleic acid binding (IEA)

PDZ domain binding (IPI)

phosphatase activity (IEA)

phosphatidylinositol monophosphate phosphatase activity (IDA)

phosphatidylinositol phosphate phosphatase activity (IEA)

phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity (ISO,ISS)

phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (IDA)

phosphatidylinositol-3-phosphate phosphatase activity (IDA)

phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity (IBA,IDA,IEA,ISO)

phosphatidylinositol-4-phosphate phosphatase activity (IDA)

protein binding (IPI,ISO)

RNA binding (IEA)

SH3 domain binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

inositol phosphate metabolic pathway (IEA)

phosphatidylinositol 3-kinase signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Control of the signaling role of PtdIns(4)P at the plasma membrane through H2O2-dependent inactivation of synaptojanin 2 during endocytosis.	Jo SI, etal., Redox Biol. 2024 May;71:103097. doi: 10.1016/j.redox.2024.103097. Epub 2024 Feb 29.
3.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
4.	Localization of mRNAs for synaptojanin isoforms in the brain of developing and mature rats.	Kudo M, etal., Brain Res Mol Brain Res. 1999 Feb 5;64(2):179-85.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Recruitment of an alternatively spliced form of synaptojanin 2 to mitochondria by the interaction with the PDZ domain of a mitochondrial outer membrane protein.	Nemoto Y and De Camilli P, EMBO J 1999 Jun 1;18(11):2991-3006.
8.	Synaptojanin 2, a novel synaptojanin isoform with a distinct targeting domain and expression pattern.	Nemoto Y, etal., J Biol Chem 1997 Dec 5;272(49):30817-21.
9.	Identification and characterization of a synaptojanin 2 splice isoform predominantly expressed in nerve terminals.	Nemoto Y, etal., J Biol Chem 2001 Nov 2;276(44):41133-42.
10.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:8889548	PMID:9442075

Genomics

Comparative Map Data

Synj2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	48,923,742 - 49,027,153 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	48,923,737 - 49,038,650 (+)	Ensembl				GRCr8
mRatBN7.2	1	46,518,594 - 46,621,919 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	46,518,709 - 46,633,687 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	47,069,005 - 47,165,022 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	53,056,255 - 53,152,284 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	47,144,430 - 47,240,455 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	46,835,922 - 46,932,544 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	46,835,971 - 46,932,529 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	48,140,566 - 48,236,043 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	40,763,794 - 40,818,491 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	42,211,492 - 42,305,219 (+)	NCBI		Celera
RGSC_v3.1	1	40,766,738 - 40,821,418 (+)	NCBI
Cytogenetic Map	1	q11	NCBI

SYNJ2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	157,981,296 - 158,099,176 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	157,981,863 - 158,099,176 (+)	Ensembl			hg38	GRCh38
GRCh37	6	158,402,895 - 158,520,208 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	158,322,907 - 158,439,556 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	158,373,327 - 158,489,977	NCBI
Celera	6	159,051,752 - 159,169,058 (+)	NCBI		Celera
Cytogenetic Map	6	q25.3	NCBI
HuRef	6	155,875,294 - 155,992,255 (+)	NCBI		HuRef
CHM1_1	6	158,665,133 - 158,782,434 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	159,227,492 - 159,345,318 (+)	NCBI		T2T-CHM13v2.0

Synj2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	5,991,555 - 6,106,041 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	5,991,555 - 6,094,565 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	5,941,280 - 6,055,766 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	5,941,280 - 6,044,290 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	5,941,280 - 6,044,290 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	5,932,123 - 6,000,772 (+)	NCBI		MGSCv36	mm8
Celera	17	6,513,365 - 6,582,071 (+)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	3.59	NCBI

Synj2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	4,290,238 - 4,400,775 (-)	Ensembl
ChiLan1.0	NW_004955439	4,305,630 - 4,400,775 (-)	NCBI	ChiLan1.0	ChiLan1.0

SYNJ2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	178,095,787 - 178,228,422 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	175,999,205 - 176,128,735 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	155,881,818 - 156,011,416 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	157,940,846 - 158,058,462 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	157,940,179 - 158,055,662 (+)	Ensembl			panPan2	panpan1.1

SYNJ2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	47,506,925 - 47,582,353 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	47,483,942 - 47,579,831 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	48,327,920 - 48,426,329 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	47,669,938 - 47,768,899 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	47,669,793 - 47,771,015 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	47,548,877 - 47,647,228 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	47,418,371 - 47,516,811 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	47,977,352 - 48,075,852 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Synj2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	142,595,865 - 142,659,959 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	9,848,062 - 9,908,760 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	9,848,070 - 9,911,952 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNJ2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	9,014,551 - 9,109,103 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	9,014,206 - 9,109,050 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	11,136,293 - 11,232,123 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNJ2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	85,579,457 - 85,695,694 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	85,580,392 - 85,692,908 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	57,949,365 - 58,065,977 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Synj2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	145,228 - 266,022 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624785	157,455 - 265,926 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Synj2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	192,777,744 - 192,876,158 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Synj2
633 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	798
Count of miRNA genes:	268
Interacting mature miRNAs:	331
Transcripts:	ENSRNOT00000066798, ENSRNOT00000067661, ENSRNOT00000068476
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	29409279	74409279	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	17315378	51816258	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	34565726	79565726	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat

Markers in Region

D1Got56

Rat Assembly	Chr	Position (strand)	Source
Celera	1	42,222,525 - 42,222,818	UniSTS
RH 2.0 Map	1	272.9	RGD
Cytogenetic Map	1	q11	UniSTS

D1Cebr7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	46,591,603 - 46,591,829 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	46,905,371 - 46,905,596	NCBI	Rnor6.0
Rnor_5.0	1	48,208,870 - 48,209,095	UniSTS	Rnor5.0
RGSC_v3.4	1	40,794,071 - 40,794,296	UniSTS	RGSC3.4
Celera	1	42,280,799 - 42,281,024	UniSTS
Cytogenetic Map	1	q11	UniSTS

D1Cebr2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	46,604,732 - 46,604,922 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	46,918,500 - 46,918,687	NCBI	Rnor6.0
Rnor_5.0	1	48,221,999 - 48,222,186	UniSTS	Rnor5.0
RGSC_v3.4	1	40,807,200 - 40,807,387	UniSTS	RGSC3.4
Celera	1	42,293,928 - 42,294,115	UniSTS
Cytogenetic Map	1	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	91	59	6	355	191	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001113371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001113372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_032071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY034050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY034051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI290811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK653289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FB336982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HH768321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U90312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066798 ⟹ ENSRNOP00000059744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	48,923,737 - 49,038,650 (+)	Ensembl
mRatBN7.2 Ensembl	1	46,518,709 - 46,633,687 (+)	Ensembl
Rnor_6.0 Ensembl	1	46,835,971 - 46,932,053 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000067661 ⟹ ENSRNOP00000062564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	48,988,426 - 49,020,998 (+)	Ensembl
mRatBN7.2 Ensembl	1	46,583,330 - 46,616,012 (+)	Ensembl
Rnor_6.0 Ensembl	1	46,873,011 - 46,932,529 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000068476 ⟹ ENSRNOP00000063385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	48,923,828 - 49,021,116 (+)	Ensembl
mRatBN7.2 Ensembl	1	46,518,709 - 46,616,012 (+)	Ensembl
Rnor_6.0 Ensembl	1	46,873,011 - 46,932,529 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000129353 ⟹ ENSRNOP00000112432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	48,923,737 - 49,021,116 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149366 ⟹ ENSRNOP00000104494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	48,923,800 - 49,021,116 (+)	Ensembl

RefSeq Acc Id:

NM_001113371 ⟹ NP_001106842

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,877 - 49,021,131 (+)	NCBI
mRatBN7.2	1	46,518,758 - 46,616,027 (+)	NCBI
Rnor_6.0	1	46,835,971 - 46,932,544 (+)	NCBI
Rnor_5.0	1	48,140,566 - 48,236,043 (+)	NCBI
RGSC_v3.4	1	40,763,794 - 40,818,491 (+)	RGD
Celera	1	42,211,541 - 42,305,219 (+)	NCBI

Sequence:

show sequence

ATGGCGCTGAGCAAAGGGCTGCGACTGCTGGCGCGGCTGGACCCCACCGGCCCGAGCAGCGTGC
TGCTGGAGGCGCGGGGCCGCGGCGACTGTCTACTCTTTGAGGCCGGCGCGGTGGCCACGCTGGC
TCCGGAAGAGAAGGAAGTCATTAAAGGACTGTATGGGAAGCCGACGGATGCCTATGGCTGCCTC
GGGGAGCTGAGTTTAAAATCCGGTGGCGTCCCCTTGAGCTTTCTGGTGTTGGTGACAGGCTGCA
CGTCAGTGGGCAGAATTCCAGATGCAGAGATCTACAAAATCACTGGCACTGAGTTTTACCCCCT
GCAGGAAGAGGCCAAGGAAGAGGACCGCCTGCCAGCCTTGAAGAAAATCCTGAGTTCAGGGGTG
TTCTATTTCGCATGGCCCAATGATGGCGCCTGCTTCGATCTGACCATCAGGGCTCAGAAACAGG
GTGATGACTGCTCTGAATGGGGGACCTCCTTCTTCTGGAACCAGCTATTGCATGTGCCTCTGCG
GCAGCACCAGGTGAACTGTCATGACTGGTTGCTGAAAGTCATCTGTGGGGTGGTGACCATCCGC
ACGGTTTATGCCTCCCACAAGCAGGCCAAGGCCTGTCTCATCTCTCGCATCAGCTGTGAACGCG
CAGGTGCTCGCTTCCTCACCCGGGGTGTGAACGACGATGGCCACGTGTCCAACTTTGTGGAGAC
AGAGCAGGCGATTTACATGGATGATGGAGTGTCGTCCTTTGTCCAGATCCGAGGCTCCGTTCCG
CTGTTCTGGGAGCAGCCAGGGCTCCAGGTTGGCTCCCATCATCTGAGACTGCACAGAGGCCTAG
AGGCCAACGCCCCTGCTTTTGAAAGGCACATGGTGCTTCTGAAGGAGCAGTACGGGCAGCAGGT
GGTGGTGAACCTGCTGGGAAGCAGAGGCGGTGAGGAGGTGCTCAACAGAGCCTTCAAGAAGTTG
CTCTGGGCTTCTTGCCACGCAGGCGACACGCCTATGATAAATTTTGACTTCCATCAGTTTGCCA
AAGGTAGGAAGCTAGAGAAATTGGAGAACCTGTTGAGACCTCAGTTAAAACTACACTGGGATGA
CTTTGGCGTATTTGCGAAGGGCGAGAATGTAAGTCCACGGTTTCAGAAAGGCACTCTGCGGATG
AACTGTCTCGACTGTCTGGACAGAACCAACACTGTACAGTGCTTCATTGCTCTTGAGGTGCTTC
ATCTGCAGCTTGAGAGCCTAGGGCTGAATTCCAAGCCCATCACTGACCGCTTCGTGGAGTCCTT
CAAAGCCATGTGGTCTCTGAATGGGCATGGCCTGAGCAAGGTGTTCACAGGGAGCAGGGCCCTG
GAAGGAAAGGCCAAGGTGGGGAAGCTGAAGGATGGGGCTAGATCCATGTCTCGTACCATCCAGT
CCAACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAAGCTACTGCTAGTTGGAGATGTCTACAA
TGAAGAGTCTACAGACAAAGGCAGGATGCTGCTGGACAACACGGCCCTTCTGGGTTTGGGGTCA
AATAAACAAAACAGTCTTTCAGGCATGCTGGATGGAAAAGCAACACCCAGGATCCTGAAGGCCA
TGACAGAACGCCAGTCAGAATTCACAAATTTCAAGCGGATCCAGATTGCTATGGGGACCTGGAA
TGTGAACGGAGGAAAACAATTCCGTAGCAATCTCCTGGGGACCACTGAACTCACTGACTGGCTC
CTGGATGCACCCCAGCTCTCAGGAGCAGTGGACTCTCAGGACGATGGCGGTCCCGCTGACATAT
TTGCCGTCGGGTTTGAGGAGATGGTGGAGCTGAGTGCAGGAAATATTGTCAATGCCAGCACCAC
CAACAGGAAGATGTGGGGTGAGCAGCTCCAGAAAGCCATCTCCCGATCCCATCGGTACATCCTC
TTGACCTCAGCACAGCTGGTGGGCGTCTGTCTTTACATCTTTGTACGTCCGTACCACGTCCCGT
TCATCAGGGATGTGGCCATCGACACCGTGAAGACCGGTATGGGGGGAAAGGCAGGGAATAAGGG
CGCCGTGGGTATCCGCTTTCAGTTCCACAGCACTAGCTTCTGCTTCATCTGCAGTCACCTGACG
GCTGGGCAGTCTCAGGTGAAGGAGAGGAACGAAGACTACCGGGAGATCACGCACAAGCTCTCCT
TCCCTTCGGGGAGAAACATATTTTCACACGATTATGTGTTTTGGTGTGGCGATTTCAACTACCG
CATCGATCTTACTTACGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTGGAAGAAACTTATG
GAATTTGATCAGTTACAGCTACAGAAATCAAGTGGGAAAATTTTTAAAGACTTTCATGAAGGAA
CCATTAACTTCGGACCCACCTACAAGTATGACGTTGGATCGGCTGCCTATGACACAAGTGACAA
GTGCCGGACCCCAGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAGCATCCGTACGATAAG
ACAGCTGGCGAACTCAACCTTCTAGACAGTGATCTAGACGGTGATGCCAACATCAGACATACCT
GGTCTCCGGGCACTCTCAAGTACTACGGCCGTGCCGAGCTGCAGGCATCTGATCACAGACCTGT
GCTGGCCATCGTAGAGGTGGAGGTTCAAGAGGTCGATGTGGGAGCCCGGGAGAGAGTCTTCCAG
GAAGTGTCCTCTGTCCAAGGCCCGCTGGACGCCACTGTTATTGTAAACCTTCAGTCTCCAACCC
TTGAAGAGAGAAATGAATTTCCAGAGGACCTGCGCACAGAACTTATGCAGACTTTGGGGAATTA
TGGGACGATTATTCTGGTCAGGATCAACCAAGGGCAGATGCTGGTGACATTTGCAGACAGCCAC
TCAGCTCTCAGTGTGCTGGATGTGGATGGTATGAAGGTGAAAGGCAGGGCCGTGAAGATTCGAC
CAAAGACCAAAGATTGGCTAGAAGGCTTGAGAGAGGAGCTCATTCGGAAGCGGGACAGCATGGC
CCCTGTGTCTCCCACCGCCAACTCCTGCTTGTTGGAGGAGAACTTTGACTTCACAAGTCTGGAC
TATGAGTCAGAAGGGGATGTTCTTGAAGATGATGAAGACTACTTAGCGGATGAGTTTGGTCAGC
CTGTAGTCTCAGACAGTGAGCTTGGAGGAGACGACTCTTCTGATACCATGAGCGCCTCGACACC
TGCCAGCAAGTCTCCCGCACTGGCTAAAAAGAAGCAACATCCAACGTACAAAGACGACGCTGAC
CTGATGACGTTAAAGCTGGAGCTGGAAGTTGCTGGGAATTTTCGCCACCGTTCTCCGAGCAGGT
CCCTGTCTGTCCCCAATAGGCCTCGGCCACCTCACCCTCCACAAAGACCCCCCCCTCCAACTGG
CTTAATGGTGAAGAAGTCTGCCTCAGATGCGTCTATCTCCTCCGGAACCCACGGGCAATATTCC
ATCTTGCAGACCGCGAAACTTCTTCCAGGAGCACCTCAGCAACCGCCCAAGGCTCGAACTGGAA
TAAGTAAACCTTACAACGTCAAACAGATCAAAACCACCAATGCTCAGGAGGCGGAAGCAGCTAT
CCGGTGTCTCCTGGAAGCTGGCGGAGGTGTCCCAGAGTCAGCCCCGGGTGCCACGCCCCTGAGA
AACCAAGGGTCTTCTAAGCCAGAGGCCTCCCTGGGGCCTCCAGTCCTACCGCGCCGGCCTGTTC
CAAGGGTTCCCACTATGAAGAAACCAACTTTGAGGAGAACAGGAAAGCCCATGTTATCAGAAGA
ACAGTGTGAACAGCAGCCTGTCCATTTTACAATGGCTTCCCAGGAAATGAACCTTGAGACCCCT
CCTCCAATAACAGCTCCCATCCCGCCTGTTCCCAAACCAAGAACATTTCAGCCTGGGAGAGGTG
TTGAGAGGAGGCCGAGTGGTGGCAAGCCAGAACCGGATGACGCTCCTCCTGTGACAGGCGCTGT
GGAGTTATCGTCTCCAGAGGCCCCAGAGGCCCCGTCCCTGGCTCCCAAGGTGCCTCCTAGGAGG
AAGAAGTCTGCACCAGCAGCCTTCCACCTGCAGGTCCTGCAGAGCAACAGCCAACTTCTGCAGG
GCCTCACATGCTCCAGCAGTTCTCCGTCCCCACCAAAGCCTGACACCCCCCTGCTCTATCCGCA
AATGGCACTTGGCACTTCATCTGCTATAAGTCCCGAAACTGATGGCCCCAGAGTGACGGAGCCC
GAGGCAGCCTCTTTTCATGGCGATTACCCAGATCCCTTCTGGAGCCTTCTCCACCACCCCAAGC
TGTTGAATAATAATACCTGGCTGTCCAAGAGCTCTGAGCCTTTAGACTTGGGGTCCAGGACCCC
TGAGAGGACACACACAGACTCAGCGCAGGTCAATGCATCAGTGGTTGAGAGGGGGCTTCCACCA
GACCATGGGGGTAAAGACTTCAGTCACTGGATGGCCGCCAGTAACAAAGACAAGAGGACAACAT
TAGGCGTTTGACCCACAGGCAAGAACATGGCCTGTTGGCTCTGTAGATGCTCTCATTTCAAACG
CTCACCTTCCTCATGTGGGCATTGCTTGACCTGGTCAAAAGGGATGTTGATGTAAAGGCACACT
GAAACCCTTTGTTTATCTGTCACTCTGTGTAGTGAATGAAAACTGTCTCCCATTCAGTACAGTT
ATCCAGCCACCCAAACGTTCCATTCAAGGTCTGTGCATTTTAAGCTTGCTCTCAGGACACTGGG
AAATGTGCTGTTGCATTCGGGATATGGATTTTAAAGGGAAGAAATCTAGATTCCCAAGACGCTC
TCATCTGCGGAATTTTAAGTGGTTGTTCAATATATGTTTGTGTGCCATTTGCTTGTTGGTTTTG
TTTGTGTTTTTACAGATTTGGGATAAGTGGTTAGGTTCATAAAAGATGACATCAAAAGCAGTCG
GGACCTTAAGAGCTGTTGTGACCCACTTGAAACCACATTAAGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001113372 ⟹ NP_001106843

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,877 - 49,021,131 (+)	NCBI
mRatBN7.2	1	46,518,758 - 46,616,027 (+)	NCBI
Rnor_6.0	1	46,835,971 - 46,932,544 (+)	NCBI
Rnor_5.0	1	48,140,566 - 48,236,043 (+)	NCBI
RGSC_v3.4	1	40,763,794 - 40,818,491 (+)	RGD
Celera	1	42,211,541 - 42,305,219 (+)	NCBI

Sequence:

show sequence

ATGGCGCTGAGCAAAGGGCTGCGACTGCTGGCGCGGCTGGACCCCACCGGCCCGAGCAGCGTGC
TGCTGGAGGCGCGGGGCCGCGGCGACTGTCTACTCTTTGAGGCCGGCGCGGTGGCCACGCTGGC
TCCGGAAGAGAAGGAAGTCATTAAAGGACTGTATGGGAAGCCGACGGATGCCTATGGCTGCCTC
GGGGAGCTGAGTTTAAAATCCGGTGGCGTCCCCTTGAGCTTTCTGGTGTTGGTGACAGGCTGCA
CGTCAGTGGGCAGAATTCCAGATGCAGAGATCTACAAAATCACTGGCACTGAGTTTTACCCCCT
GCAGGAAGAGGCCAAGGAAGAGGACCGCCTGCCAGCCTTGAAGAAAATCCTGAGTTCAGGGGTG
TTCTATTTCGCATGGCCCAATGATGGCGCCTGCTTCGATCTGACCATCAGGGCTCAGAAACAGG
GTGATGACTGCTCTGAATGGGGGACCTCCTTCTTCTGGAACCAGCTATTGCATGTGCCTCTGCG
GCAGCACCAGGTGAACTGTCATGACTGGTTGCTGAAAGTCATCTGTGGGGTGGTGACCATCCGC
ACGGTTTATGCCTCCCACAAGCAGGCCAAGGCCTGTCTCATCTCTCGCATCAGCTGTGAACGCG
CAGGTGCTCGCTTCCTCACCCGGGGTGTGAACGACGATGGCCACGTGTCCAACTTTGTGGAGAC
AGAGCAGGCGATTTACATGGATGATGGAGTGTCGTCCTTTGTCCAGATCCGAGGCTCCGTTCCG
CTGTTCTGGGAGCAGCCAGGGCTCCAGGTTGGCTCCCATCATCTGAGACTGCACAGAGGCCTAG
AGGCCAACGCCCCTGCTTTTGAAAGGCACATGGTGCTTCTGAAGGAGCAGTACGGGCAGCAGGT
GGTGGTGAACCTGCTGGGAAGCAGAGGCGGTGAGGAGGTGCTCAACAGAGCCTTCAAGAAGTTG
CTCTGGGCTTCTTGCCACGCAGGCGACACGCCTATGATAAATTTTGACTTCCATCAGTTTGCCA
AAGGTAGGAAGCTAGAGAAATTGGAGAACCTGTTGAGACCTCAGTTAAAACTACACTGGGATGA
CTTTGGCGTATTTGCGAAGGGCGAGAATGTAAGTCCACGGTTTCAGAAAGGCACTCTGCGGATG
AACTGTCTCGACTGTCTGGACAGAACCAACACTGTACAGTGCTTCATTGCTCTTGAGGTGCTTC
ATCTGCAGCTTGAGAGCCTAGGGCTGAATTCCAAGCCCATCACTGACCGCTTCGTGGAGTCCTT
CAAAGCCATGTGGTCTCTGAATGGGCATGGCCTGAGCAAGGTGTTCACAGGGAGCAGGGCCCTG
GAAGGAAAGGCCAAGGTGGGGAAGCTGAAGGATGGGGCTAGATCCATGTCTCGTACCATCCAGT
CCAACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAAGCTACTGCTAGTTGGAGATGTCTACAA
TGAAGAGTCTACAGACAAAGGCAGGATGCTGCTGGACAACACGGCCCTTCTGGGTTTGGGGTCA
AATAAACAAAACAGTCTTTCAGGCATGCTGGATGGAAAAGCAACACCCAGGATCCTGAAGGCCA
TGACAGAACGCCAGTCAGAATTCACAAATTTCAAGCGGATCCAGATTGCTATGGGGACCTGGAA
TGTGAACGGAGGAAAACAATTCCGTAGCAATCTCCTGGGGACCACTGAACTCACTGACTGGCTC
CTGGATGCACCCCAGCTCTCAGGAGCAGTGGACTCTCAGGACGATGGCGGTCCCGCTGACATAT
TTGCCGTCGGGTTTGAGGAGATGGTGGAGCTGAGTGCAGGAAATATTGTCAATGCCAGCACCAC
CAACAGGAAGATGTGGGGTGAGCAGCTCCAGAAAGCCATCTCCCGATCCCATCGGTACATCCTC
TTGACCTCAGCACAGCTGGTGGGCGTCTGTCTTTACATCTTTGTACGTCCGTACCACGTCCCGT
TCATCAGGGATGTGGCCATCGACACCGTGAAGACCGGTATGGGGGGAAAGGCAGGGAATAAGGG
CGCCGTGGGTATCCGCTTTCAGTTCCACAGCACTAGCTTCTGCTTCATCTGCAGTCACCTGACG
GCTGGGCAGTCTCAGGTGAAGGAGAGGAACGAAGACTACCGGGAGATCACGCACAAGCTCTCCT
TCCCTTCGGGGAGAAACATATTTTCACACGATTATGTGTTTTGGTGTGGCGATTTCAACTACCG
CATCGATCTTACTTACGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTGGAAGAAACTTATG
GAATTTGATCAGTTACAGCTACAGAAATCAAGTGGGAAAATTTTTAAAGACTTTCATGAAGGAA
CCATTAACTTCGGACCCACCTACAAGTATGACGTTGGATCGGCTGCCTATGACACAAGTGACAA
GTGCCGGACCCCAGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAGCATCCGTACGATAAG
ACAGCTGGCGAACTCAACCTTCTAGACAGTGATCTAGACGGTGATGCCAACATCAGACATACCT
GGTCTCCGGGCACTCTCAAGTACTACGGCCGTGCCGAGCTGCAGGCATCTGATCACAGACCTGT
GCTGGCCATCGTAGAGGTGGAGGTTCAAGAGGTCGATGTGGGAGCCCGGGAGAGAGTCTTCCAG
GAAGTGTCCTCTGTCCAAGGCCCGCTGGACGCCACTGTTATTGTAAACCTTCAGTCTCCAACCC
TTGAAGAGAGAAATGAATTTCCAGAGGACCTGCGCACAGAACTTATGCAGACTTTGGGGAATTA
TGGGACGATTATTCTGGTCAGGATCAACCAAGGGCAGATGCTGGTGACATTTGCAGACAGCCAC
TCAGCTCTCAGTGTGCTGGATGTGGATGGTATGAAGGTGAAAGGCAGGGCCGTGAAGATTCGAC
CAAAGACCAAAGATTGGCTAGAAGGCTTGAGAGAGGAGCTCATTCGGAAGCGGGACAGCATGGC
CCCTGTGTCTCCCACCGCCAACTCCTGCTTGTTGGAGGAGAACTTTGACTTCACAAGTCTGGAC
TATGAGTCAGAAGGGGATGTTCTTGAAGATGATGAAGACTACTTAGCGGATGAGTTTGGTCAGC
CTGTAGTCTCAGACAGTGAGCTTGGAGGAGACGACTCTTCTGATACCATGAGCGCCTCGACACC
TGCCAGCAAGTCTCCCGCACTGGCTAAAAAGAAGCAACATCCAACGTACAAAGCTGGCTTAATG
GTGAAGAAGTCTGCCTCAGATGCGTCTATCTCCTCCGGAACCCACGGGCAATATTCCATCTTGC
AGACCGCGAAACTTCTTCCAGGAGCACCTCAGCAACCGCCCAAGGCTCGAACTGGAATAAGTAA
ACCTTACAACGTCAAACAGATCAAAACCACCAATGCTCAGGAGGCGGAAGCAGCTATCCGGTGT
CTCCTGGAAGCTGGCGGAGGTGTCCCAGAGTCAGCCCCGGGTGCCACGCCCCTGAGAAACCAAG
GGTCTTCTAAGCCAGAGGCCTCCCTGGGGCCTCCAGTCCTACCGCGCCGGCCTGTTCCAAGGGT
TCCCACTATGAAGAAACCAACTTTGAGGAGAACAGGAAAGCCCATGTTATCAGAAGAACAGTGT
GAACAGCAGCCTGTCCATTTTACAATGGCTTCCCAGGAAATGAACCTTGAGACCCCTCCTCCAA
TAACAGCTCCCATCCCGCCTGTTCCCAAACCAAGAACATTTCAGCCTGGGAGAGGTGTTGAGAG
GAGGCCGAGTGGTGGCAAGCCAGAACCGGATGACGCTCCTCCTGTGACAGGCGCTGTGGAGTTA
TCGTCTCCAGAGGCCCCAGAGGCCCCGTCCCTGGCTCCCAAGGTGCCTCCTAGGAGGAAGAAGT
CTGCACCAGCAGCCTTCCACCTGCAGGTCCTGCAGAGCAACAGCCAACTTCTGCAGGGCCTCAC
ATGCTCCAGCAGTTCTCCGTCCCCACCAAAGCCTGACACCCCCCTGCTCTATCCGCAAATGGCA
CTTGGCACTTCATCTGCTATAAGTCCCGAAACTGATGGCCCCAGAGTGACGGAGCCCGAGGCAG
CCTCTTTTCATGGCGATTACCCAGATCCCTTCTGGAGCCTTCTCCACCACCCCAAGCTGTTGAA
TAATAATACCTGGCTGTCCAAGAGCTCTGAGCCTTTAGACTTGGGGTCCAGGACCCCTGAGAGG
ACACACACAGACTCAGCGCAGGTCAATGCATCAGTGGTTGAGAGGGGGCTTCCACCAGACCATG
GGGGTAAAGACTTCAGTCACTGGATGGCCGCCAGTAACAAAGACAAGAGGACAACATTAGGCGT
TTGACCCACAGGCAAGAACATGGCCTGTTGGCTCTGTAGATGCTCTCATTTCAAACGCTCACCT
TCCTCATGTGGGCATTGCTTGACCTGGTCAAAAGGGATGTTGATGTAAAGGCACACTGAAACCC
TTTGTTTATCTGTCACTCTGTGTAGTGAATGAAAACTGTCTCCCATTCAGTACAGTTATCCAGC
CACCCAAACGTTCCATTCAAGGTCTGTGCATTTTAAGCTTGCTCTCAGGACACTGGGAAATGTG
CTGTTGCATTCGGGATATGGATTTTAAAGGGAAGAAATCTAGATTCCCAAGACGCTCTCATCTG
CGGAATTTTAAGTGGTTGTTCAATATATGTTTGTGTGCCATTTGCTTGTTGGTTTTGTTTGTGT
TTTTACAGATTTGGGATAAGTGGTTAGGTTCATAAAAGATGACATCAAAAGCAGTCGGGACCTT
AAGAGCTGTTGTGACCCACTTGAAACCACATTAAGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_032071 ⟹ NP_114460

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,828 - 49,021,131 (+)	NCBI
mRatBN7.2	1	46,518,709 - 46,616,027 (+)	NCBI
Rnor_6.0	1	46,835,922 - 46,932,544 (+)	NCBI
Rnor_5.0	1	48,140,566 - 48,236,043 (+)	NCBI
RGSC_v3.4	1	40,763,794 - 40,818,491 (+)	RGD
Celera	1	42,211,492 - 42,305,219 (+)	RGD

Sequence:

show sequence

CACGAGGCGCCCTCGGGCAGGACCCCGCCCCGGCTCCCCTGTGCTCCCGGCGCCCATGGCGCTG
AGCAAAGGGCTGCGACTGCTGGCGCGGCTGGACCCCACCGGCCCGAGCAGCGTGCTGCTGGAGG
CGCGGGGCCGCGGCGACTGTCTACTCTTTGAGGCCGGCGCGGTGGCCACGCTGGCTCCGGAAGA
GAAGGAAGTCATTAAAGGACTGTATGGGAAGCCGACGGATGCCTATGGCTGCCTCGGGGAGCTG
AGTTTAAAATCCGGTGGCGTCCCCTTGAGCTTTCTGGTGTTGGTGACAGGCTGCACGTCAGTGG
GCAGAATTCCAGATGCAGAGATCTACAAAATCACTGGCACTGAGTTTTACCCCCTGCAGGAAGA
GGCCAAGGAAGAGGACCGCCTGCCAGCCTTGAAGAAAATCCTGAGTTCAGGGGTGTTCTATTTC
GCATGGCCCAATGATGGCGCCTGCTTCGATCTGACCATCAGGGCTCAGAAACAGGGTGATGACT
GCTCTGAATGGGGGACCTCCTTCTTCTGGAACCAGCTATTGCATGTGCCTCTGCGGCAGCACCA
GGTGAACTGTCATGACTGGTTGCTGAAAGTCATCTGTGGGGTGGTGACCATCCGCACGGTTTAT
GCCTCCCACAAGCAGGCCAAGGCCTGTCTCATCTCTCGCATCAGCTGTGAACGCGCAGGTGCTC
GCTTCCTCACCCGGGGTGTGAACGACGATGGCCACGTGTCCAACTTTGTGGAGACAGAGCAGGC
GATTTACATGGATGATGGAGTGTCGTCCTTTGTCCAGATCCGAGGCTCCGTTCCGCTGTTCTGG
GAGCAGCCAGGGCTCCAGGTTGGCTCCCATCATCTGAGACTGCACAGAGGCCTAGAGGCCAACG
CCCCTGCTTTTGAAAGGCACATGGTGCTTCTGAAGGAGCAGTACGGGCAGCAGGTGGTGGTGAA
CCTGCTGGGAAGCAGAGGCGGTGAGGAGGTGCTCAACAGAGCCTTCAAGAAGTTGCTCTGGGCT
TCTTGCCACGCAGGCGACACGCCTATGATAAATTTTGACTTCCATCAGTTTGCCAAAGGTAGGA
AGCTAGAGAAATTGGAGAACCTGTTGAGACCTCAGTTAAAACTACACTGGGATGACTTTGGCGT
ATTTGCGAAGGGCGAGAATGTAAGTCCACGGTTTCAGAAAGGCACTCTGCGGATGAACTGTCTC
GACTGTCTGGACAGAACCAACACTGTACAGTGCTTCATTGCTCTTGAGGTGCTTCATCTGCAGC
TTGAGAGCCTAGGGCTGAATTCCAAGCCCATCACTGACCGCTTCGTGGAGTCCTTCAAAGCCAT
GTGGTCTCTGAATGGGCATGGCCTGAGCAAGGTGTTCACAGGGAGCAGGGCCCTGGAAGGAAAG
GCCAAGGTGGGGAAGCTGAAGGATGGGGCTAGATCCATGTCTCGTACCATCCAGTCCAACTTCT
TCGACGGGGTGAAGCAGGAGGCCATCAAGCTACTGCTAGTTGGAGATGTCTACAATGAAGAGTC
TACAGACAAAGGCAGGATGCTGCTGGACAACACGGCCCTTCTGGGTTTGGGGTCAAATAAACAA
AACAGTCTTTCAGGCATGCTGGATGGAAAAGCAACACCCAGGATCCTGAAGGCCATGACAGAAC
GCCAGTCAGAATTCACAAATTTCAAGCGGATCCAGATTGCTATGGGGACCTGGAATGTGAACGG
AGGAAAACAATTCCGTAGCAATCTCCTGGGGACCACTGAACTCACTGACTGGCTCCTGGATGCA
CCCCAGCTCTCAGGAGCAGTGGACTCTCAGGACGATGGCGGTCCCGCTGACATATTTGCCGTCG
GGTTTGAGGAGATGGTGGAGCTGAGTGCAGGAAATATTGTCAATGCCAGCACCACCAACAGGAA
GATGTGGGGTGAGCAGCTCCAGAAAGCCATCTCCCGATCCCATCGGTACATCCTCTTGACCTCA
GCACAGCTGGTGGGCGTCTGTCTTTACATCTTTGTACGTCCGTACCACGTCCCGTTCATCAGGG
ATGTGGCCATCGACACCGTGAAGACCGGTATGGGGGGAAAGGCAGGGAATAAGGGCGCCGTGGG
TATCCGCTTTCAGTTCCACAGCACTAGCTTCTGCTTCATCTGCAGTCACCTGACGGCTGGGCAG
TCTCAGGTGAAGGAGAGGAACGAAGACTACCGGGAGATCACGCACAAGCTCTCCTTCCCTTCGG
GGAGAAACATATTTTCACACGATTATGTGTTTTGGTGTGGCGATTTCAACTACCGCATCGATCT
TACTTACGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTGGAAGAAACTTATGGAATTTGAT
CAGTTACAGCTACAGAAATCAAGTGGGAAAATTTTTAAAGACTTTCATGAAGGAACCATTAACT
TCGGACCCACCTACAAGTATGACGTTGGATCGGCTGCCTATGACACAAGTGACAAGTGCCGGAC
CCCAGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAGCATCCGTACGATAAGACAGCTGGC
GAACTCAACCTTCTAGACAGTGATCTAGACGGTGATGCCAACATCAGACATACCTGGTCTCCGG
GCACTCTCAAGTACTACGGCCGTGCCGAGCTGCAGGCATCTGATCACAGACCTGTGCTGGCCAT
CGTAGAGGTGGAGGTTCAAGAGGTCGATGTGGGAGCCCGGGAGAGAGTCTTCCAGGAAGTGTCC
TCTGTCCAAGGCCCGCTGGACGCCACTGTTATTGTAAACCTTCAGTCTCCAACCCTTGAAGAGA
GAAATGAATTTCCAGAGGACCTGCGCACAGAACTTATGCAGACTTTGGGGAATTATGGGACGAT
TATTCTGGTCAGGATCAACCAAGGGCAGATGCTGGTGACATTTGCAGACAGCCACTCAGCTCTC
AGTGTGCTGGATGTGGATGGTATGAAGGTGAAAGGCAGGGCCGTGAAGATTCGACCAAAGACCA
AAGATTGGCTAGAAGGCTTGAGAGAGGAGCTCATTCGGAAGCGGGACAGCATGGCCCCTGTGTC
TCCCACCGCCAACTCCTGCTTGTTGGAGGAGAACTTTGACTTCACAAGTCTGGACTATGAGTCA
GAAGGGGATGTTCTTGAAGATGATGAAGACTACTTAGCGGATGAGTTTGGTCAGCCTGTAGTCT
CAGACAGTGAGCTTGGAGGAGACGACTCTTCTGATACCATGAGCGCCTCGACACCTGCCAGCAA
GTCTCCCGCACTGGCTAAAAAGAAGCAACATCCAACGTACAAAGCTGGCTTAATGGTGAAGAAG
TCTGCCTCAGATGCGTCTATCTCCTCCGGAACCCACGGGCAATATTCCATCTTGCAGACCGCGA
AACTTCTTCCAGGAGCACCTCAGCAACCGCCCAAGGCTCGAACTGGAATAAGTAAACCTTACAA
CGTCAAACAGATCAAAACCACCAATGCTCAGGAGGCGGAAGCAGCTATCCGGTGTCTCCTGGAA
GCTGGCGGAGGTGTCCCAGAGTCAGCCCCGGGTGCCACGCCCCTGAGAAACCAAGGGTCTTCTA
AGCCAGAGGCCTCCCTGGGGCCTCCAGTCCTACCGCGCCGGCCTGTTCCAAGGGTTCCCACTAT
GAAGAAACCAACTTTGAGGAGAACAGGAAAGATCGTTTTCTGCTCTAGCTCACAAGCTTCTCAA
CCTTGCTCACTGCTGCAAAGACATGAGTTTGTAAGGACAGTAGCCGCCCAGAGACTGACACCCG
TAGATGCTTCCGGATCTTCCGTTTGATCTCAGTTCTGGGAGCAGGCCACTTGCCCATGTTATCA
GAAGAACAGTGTGAACAGCAGCCTGTCCATTTTACAATGGCTTCCCAGGAAATGAACCTTGAGA
CCCCTCCTCCAATAACAGCTCCCATCCCGCCTGTTCCCAAACCAAGAACATTTCAGCCTGGGAG
AGGTGTTGAGAGGAGGCCGAGTGGTGGCAAGCCAGAACCGGATGACGCTCCTCCTGTGACAGGC
GCTGTGGAGTTATCGTCTCCAGAGGCCCCAGAGGCCCCGTCCCTGGCTCCCAAGGTGCCTCCTA
GGAGGAAGAAGTCTGCACCAGCAGCCTTCCACCTGCAGGTCCTGCAGAGCAACAGCCAACTTCT
GCAGGGCCTCACATGCTCCAGCAGTTCTCCGTCCCCACCAAAGCCTGACACCCCCCTGCTCTAT
CCGCAAATGGCACTTGGCACTTCATCTGCTATAAGTCCCGAAACTGATGGCCCCAGAGTGACGG
AGCCCGAGGCAGCCTCTTTTCATGGCGATTACCCAGATCCCTTCTGGAGCCTTCTCCACCACCC
CAAGCTGTTGAATAATAATACCTGGCTGTCCAAGAGCTCTGAGCCTTTAGACTTGGGGTCCAGG
ACCCCTGAGAGGACACACACAGACTCAGCGCAGGTCAATGCATCAGTGGTTGAGAGGGGGCTTC
CACCAGACCATGGGGGTAAAGACTTCAGTCACTGGATGGCCGCCAGTAACAAAGACAAGAGGAC
AACATTAGGCGTTTGACCCACAGGCAAGAACATGGCCTGTTGGCTCTGTAGATGCTCTCATTTC
AAACGCTCACCTTCCTCATGTGGGCATTGCTTGACCTGGTCAAAAGGGATGTTGATGTAAAGGC
ACACTGAAACCCTTTGTTTATCTGTCACTCTGTGTAGTGAATGAAAACTGTCTCCCATTCAGTA
CAGTTATCCAGCCACCCAAACGTTCCATTCAAGGTCTGTGCATTTTAAGCTTGCTCTCAGGACA
CTGGGAAATGTGCTGTTGCATTCGGGATATGGATTTTAAAGGGAAGAAATCTAGATTCCCAAGA
CGCTCTCATCTGCGGAATTTTAAGTGGTTGTTCAATATATGTTTGTGTGCCATTTGCTTGTTGG
TTTTGTTTGTGTTTTTACAGATTTGGGATAAGTGGTTAGGTTCATAAAAGATGACATCAAAAGC
AGTCGGGACCTTAAGAGCTGTTGTGACCCACTTGAAACCACATTAAGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039092677 ⟹ XP_038948605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,743 - 49,022,603 (+)	NCBI
mRatBN7.2	1	46,518,596 - 46,621,356 (+)	NCBI

RefSeq Acc Id:

XM_039092679 ⟹ XP_038948607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,742 - 49,027,153 (+)	NCBI
mRatBN7.2	1	46,518,594 - 46,621,919 (+)	NCBI

RefSeq Acc Id:

XM_039092680 ⟹ XP_038948608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,743 - 49,027,153 (+)	NCBI
mRatBN7.2	1	46,518,595 - 46,621,919 (+)	NCBI

RefSeq Acc Id:

XM_039092684 ⟹ XP_038948612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,743 - 49,020,046 (+)	NCBI
mRatBN7.2	1	46,518,595 - 46,614,943 (+)	NCBI

RefSeq Acc Id:

XM_039092687 ⟹ XP_038948615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,420 - 49,022,603 (+)	NCBI
mRatBN7.2	1	46,583,313 - 46,621,356 (+)	NCBI

RefSeq Acc Id:

XM_063275679 ⟹ XP_063131749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,743 - 49,022,603 (+)	NCBI

RefSeq Acc Id:

XM_063275683 ⟹ XP_063131753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,742 - 49,027,153 (+)	NCBI

RefSeq Acc Id:

XM_063275686 ⟹ XP_063131756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,743 - 49,027,153 (+)	NCBI

RefSeq Acc Id:

XM_063275688 ⟹ XP_063131758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,742 - 49,020,046 (+)	NCBI

RefSeq Acc Id:

XM_063275699 ⟹ XP_063131769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,420 - 49,022,603 (+)	NCBI

RefSeq Acc Id:

XM_063275707 ⟹ XP_063131777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,420 - 49,022,603 (+)	NCBI

RefSeq Acc Id:

XM_063275714 ⟹ XP_063131784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,769 - 49,022,603 (+)	NCBI

RefSeq Acc Id:

XM_063275718 ⟹ XP_063131788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,420 - 49,022,603 (+)	NCBI

RefSeq Acc Id:

XM_063275719 ⟹ XP_063131789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,420 - 49,027,153 (+)	NCBI

RefSeq Acc Id:

XM_063275722 ⟹ XP_063131792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,420 - 49,027,153 (+)	NCBI

RefSeq Acc Id:

XM_063275725 ⟹ XP_063131795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,411 - 49,027,153 (+)	NCBI

RefSeq Acc Id:

XM_063275728 ⟹ XP_063131798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,988,769 - 49,027,153 (+)	NCBI

RefSeq Acc Id:

XM_063275732 ⟹ XP_063131802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	48,923,743 - 49,020,046 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001106842	(Get FASTA)	NCBI Sequence Viewer
	NP_001106843	(Get FASTA)	NCBI Sequence Viewer
	NP_114460	(Get FASTA)	NCBI Sequence Viewer
	XP_038948605	(Get FASTA)	NCBI Sequence Viewer
	XP_038948607	(Get FASTA)	NCBI Sequence Viewer
	XP_038948608	(Get FASTA)	NCBI Sequence Viewer
	XP_038948612	(Get FASTA)	NCBI Sequence Viewer
	XP_038948615	(Get FASTA)	NCBI Sequence Viewer
	XP_063131749	(Get FASTA)	NCBI Sequence Viewer
	XP_063131753	(Get FASTA)	NCBI Sequence Viewer
	XP_063131756	(Get FASTA)	NCBI Sequence Viewer
	XP_063131758	(Get FASTA)	NCBI Sequence Viewer
	XP_063131769	(Get FASTA)	NCBI Sequence Viewer
	XP_063131777	(Get FASTA)	NCBI Sequence Viewer
	XP_063131784	(Get FASTA)	NCBI Sequence Viewer
	XP_063131788	(Get FASTA)	NCBI Sequence Viewer
	XP_063131789	(Get FASTA)	NCBI Sequence Viewer
	XP_063131792	(Get FASTA)	NCBI Sequence Viewer
	XP_063131795	(Get FASTA)	NCBI Sequence Viewer
	XP_063131798	(Get FASTA)	NCBI Sequence Viewer
	XP_063131802	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB92481	(Get FASTA)	NCBI Sequence Viewer
	AAK61722	(Get FASTA)	NCBI Sequence Viewer
	AAK61723	(Get FASTA)	NCBI Sequence Viewer
	CAR81447	(Get FASTA)	NCBI Sequence Viewer
	CBX84909	(Get FASTA)	NCBI Sequence Viewer
	EDL83727	(Get FASTA)	NCBI Sequence Viewer
	EDL83728	(Get FASTA)	NCBI Sequence Viewer
	EDL83729	(Get FASTA)	NCBI Sequence Viewer
	EDL83730	(Get FASTA)	NCBI Sequence Viewer
	EDL83731	(Get FASTA)	NCBI Sequence Viewer
	EDL83732	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059744
	ENSRNOP00000062564
	ENSRNOP00000063385
	ENSRNOP00000104494
	ENSRNOP00000112432
GenBank Protein	O55207	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_114460 ⟸ NM_032071
- Peptide Label:	isoform 3
- UniProtKB:	F1M2D6 (UniProtKB/TrEMBL), A6KNZ7 (UniProtKB/TrEMBL), A6KNZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALSKGLRLLARLDPTGPSSVLLEARGRGDCLLFEAGAVATLAPEEKEVIKGLYGKPTDAYGCL GELSLKSGGVPLSFLVLVTGCTSVGRIPDAEIYKITGTEFYPLQEEAKEEDRLPALKKILSSGV FYFAWPNDGACFDLTIRAQKQGDDCSEWGTSFFWNQLLHVPLRQHQVNCHDWLLKVICGVVTIR TVYASHKQAKACLISRISCERAGARFLTRGVNDDGHVSNFVETEQAIYMDDGVSSFVQIRGSVP LFWEQPGLQVGSHHLRLHRGLEANAPAFERHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKL LWASCHAGDTPMINFDFHQFAKGRKLEKLENLLRPQLKLHWDDFGVFAKGENVSPRFQKGTLRM NCLDCLDRTNTVQCFIALEVLHLQLESLGLNSKPITDRFVESFKAMWSLNGHGLSKVFTGSRAL EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYNEESTDKGRMLLDNTALLGLGS NKQNSLSGMLDGKATPRILKAMTERQSEFTNFKRIQIAMGTWNVNGGKQFRSNLLGTTELTDWL LDAPQLSGAVDSQDDGGPADIFAVGFEEMVELSAGNIVNASTTNRKMWGEQLQKAISRSHRYIL LTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLT AGQSQVKERNEDYREITHKLSFPSGRNIFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLM EFDQLQLQKSSGKIFKDFHEGTINFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPYDK TAGELNLLDSDLDGDANIRHTWSPGTLKYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQ EVSSVQGPLDATVIVNLQSPTLEERNEFPEDLRTELMQTLGNYGTIILVRINQGQMLVTFADSH SALSVLDVDGMKVKGRAVKIRPKTKDWLEGLREELIRKRDSMAPVSPTANSCLLEENFDFTSLD YESEGDVLEDDEDYLADEFGQPVVSDSELGGDDSSDTMSASTPASKSPALAKKKQHPTYKAGLM VKKSASDASISSGTHGQYSILQTAKLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRC LLEAGGGVPESAPGATPLRNQGSSKPEASLGPPVLPRRPVPRVPTMKKPTLRRTGKIVFCSSSQ ASQPCSLLQRHEFVRTVAAQRLTPVDASGSSV hide sequence

RefSeq Acc Id:	NP_001106842 ⟸ NM_001113371
- Peptide Label:	isoform 1
- UniProtKB:	Q91ZD9 (UniProtKB/Swiss-Prot), Q91ZD8 (UniProtKB/Swiss-Prot), O55207 (UniProtKB/Swiss-Prot), A6KNZ4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALSKGLRLLARLDPTGPSSVLLEARGRGDCLLFEAGAVATLAPEEKEVIKGLYGKPTDAYGCL GELSLKSGGVPLSFLVLVTGCTSVGRIPDAEIYKITGTEFYPLQEEAKEEDRLPALKKILSSGV FYFAWPNDGACFDLTIRAQKQGDDCSEWGTSFFWNQLLHVPLRQHQVNCHDWLLKVICGVVTIR TVYASHKQAKACLISRISCERAGARFLTRGVNDDGHVSNFVETEQAIYMDDGVSSFVQIRGSVP LFWEQPGLQVGSHHLRLHRGLEANAPAFERHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKL LWASCHAGDTPMINFDFHQFAKGRKLEKLENLLRPQLKLHWDDFGVFAKGENVSPRFQKGTLRM NCLDCLDRTNTVQCFIALEVLHLQLESLGLNSKPITDRFVESFKAMWSLNGHGLSKVFTGSRAL EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYNEESTDKGRMLLDNTALLGLGS NKQNSLSGMLDGKATPRILKAMTERQSEFTNFKRIQIAMGTWNVNGGKQFRSNLLGTTELTDWL LDAPQLSGAVDSQDDGGPADIFAVGFEEMVELSAGNIVNASTTNRKMWGEQLQKAISRSHRYIL LTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLT AGQSQVKERNEDYREITHKLSFPSGRNIFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLM EFDQLQLQKSSGKIFKDFHEGTINFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPYDK TAGELNLLDSDLDGDANIRHTWSPGTLKYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQ EVSSVQGPLDATVIVNLQSPTLEERNEFPEDLRTELMQTLGNYGTIILVRINQGQMLVTFADSH SALSVLDVDGMKVKGRAVKIRPKTKDWLEGLREELIRKRDSMAPVSPTANSCLLEENFDFTSLD YESEGDVLEDDEDYLADEFGQPVVSDSELGGDDSSDTMSASTPASKSPALAKKKQHPTYKDDAD LMTLKLELEVAGNFRHRSPSRSLSVPNRPRPPHPPQRPPPPTGLMVKKSASDASISSGTHGQYS ILQTAKLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEAGGGVPESAPGATPLR NQGSSKPEASLGPPVLPRRPVPRVPTMKKPTLRRTGKPMLSEEQCEQQPVHFTMASQEMNLETP PPITAPIPPVPKPRTFQPGRGVERRPSGGKPEPDDAPPVTGAVELSSPEAPEAPSLAPKVPPRR KKSAPAAFHLQVLQSNSQLLQGLTCSSSSPSPPKPDTPLLYPQMALGTSSAISPETDGPRVTEP EAASFHGDYPDPFWSLLHHPKLLNNNTWLSKSSEPLDLGSRTPERTHTDSAQVNASVVERGLPP DHGGKDFSHWMAASNKDKRTTLGV hide sequence

RefSeq Acc Id:	NP_001106843 ⟸ NM_001113372
- Peptide Label:	isoform 2
- UniProtKB:	A6KNZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALSKGLRLLARLDPTGPSSVLLEARGRGDCLLFEAGAVATLAPEEKEVIKGLYGKPTDAYGCL GELSLKSGGVPLSFLVLVTGCTSVGRIPDAEIYKITGTEFYPLQEEAKEEDRLPALKKILSSGV FYFAWPNDGACFDLTIRAQKQGDDCSEWGTSFFWNQLLHVPLRQHQVNCHDWLLKVICGVVTIR TVYASHKQAKACLISRISCERAGARFLTRGVNDDGHVSNFVETEQAIYMDDGVSSFVQIRGSVP LFWEQPGLQVGSHHLRLHRGLEANAPAFERHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKL LWASCHAGDTPMINFDFHQFAKGRKLEKLENLLRPQLKLHWDDFGVFAKGENVSPRFQKGTLRM NCLDCLDRTNTVQCFIALEVLHLQLESLGLNSKPITDRFVESFKAMWSLNGHGLSKVFTGSRAL EGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYNEESTDKGRMLLDNTALLGLGS NKQNSLSGMLDGKATPRILKAMTERQSEFTNFKRIQIAMGTWNVNGGKQFRSNLLGTTELTDWL LDAPQLSGAVDSQDDGGPADIFAVGFEEMVELSAGNIVNASTTNRKMWGEQLQKAISRSHRYIL LTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLT AGQSQVKERNEDYREITHKLSFPSGRNIFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLM EFDQLQLQKSSGKIFKDFHEGTINFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPYDK TAGELNLLDSDLDGDANIRHTWSPGTLKYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQ EVSSVQGPLDATVIVNLQSPTLEERNEFPEDLRTELMQTLGNYGTIILVRINQGQMLVTFADSH SALSVLDVDGMKVKGRAVKIRPKTKDWLEGLREELIRKRDSMAPVSPTANSCLLEENFDFTSLD YESEGDVLEDDEDYLADEFGQPVVSDSELGGDDSSDTMSASTPASKSPALAKKKQHPTYKAGLM VKKSASDASISSGTHGQYSILQTAKLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRC LLEAGGGVPESAPGATPLRNQGSSKPEASLGPPVLPRRPVPRVPTMKKPTLRRTGKPMLSEEQC EQQPVHFTMASQEMNLETPPPITAPIPPVPKPRTFQPGRGVERRPSGGKPEPDDAPPVTGAVEL SSPEAPEAPSLAPKVPPRRKKSAPAAFHLQVLQSNSQLLQGLTCSSSSPSPPKPDTPLLYPQMA LGTSSAISPETDGPRVTEPEAASFHGDYPDPFWSLLHHPKLLNNNTWLSKSSEPLDLGSRTPER THTDSAQVNASVVERGLPPDHGGKDFSHWMAASNKDKRTTLGV hide sequence

Ensembl Acc Id:

ENSRNOP00000062564 ⟸ ENSRNOT00000067661

Ensembl Acc Id:

ENSRNOP00000063385 ⟸ ENSRNOT00000068476

Ensembl Acc Id:

ENSRNOP00000059744 ⟸ ENSRNOT00000066798

RefSeq Acc Id:	XP_038948607 ⟸ XM_039092679
- Peptide Label:	isoform X6
- UniProtKB:	A6KNZ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948608 ⟸ XM_039092680
- Peptide Label:	isoform X7
- UniProtKB:	A6KNZ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948612 ⟸ XM_039092684
- Peptide Label:	isoform X8
- UniProtKB:	A6KNZ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948605 ⟸ XM_039092677
- Peptide Label:	isoform X2
- UniProtKB:	A6KNZ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948615 ⟸ XM_039092687
- Peptide Label:	isoform X11
- UniProtKB:	A6KNZ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131753 ⟸ XM_063275683
- Peptide Label:	isoform X3
- UniProtKB:	A6KNZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131758 ⟸ XM_063275688
- Peptide Label:	isoform X5
- UniProtKB:	A6KNZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131756 ⟸ XM_063275686
- Peptide Label:	isoform X4
- UniProtKB:	A6KNZ8 (UniProtKB/TrEMBL), F1M0S5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131749 ⟸ XM_063275679
- Peptide Label:	isoform X1
- UniProtKB:	A6KNZ4 (UniProtKB/TrEMBL), A6KNZ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131802 ⟸ XM_063275732
- Peptide Label:	isoform X18
- UniProtKB:	A6KNZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131795 ⟸ XM_063275725
- Peptide Label:	isoform X16
- UniProtKB:	A6KNZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131792 ⟸ XM_063275722
- Peptide Label:	isoform X15
- UniProtKB:	A6KNZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131789 ⟸ XM_063275719
- Peptide Label:	isoform X14
- UniProtKB:	A6KNZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131769 ⟸ XM_063275699
- Peptide Label:	isoform X9
- UniProtKB:	A6KNZ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131777 ⟸ XM_063275707
- Peptide Label:	isoform X10
- UniProtKB:	A6KNZ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131788 ⟸ XM_063275718
- Peptide Label:	isoform X13
- UniProtKB:	A6KNZ9 (UniProtKB/TrEMBL), F1LPP1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131798 ⟸ XM_063275728
- Peptide Label:	isoform X17
- UniProtKB:	A6KNZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131784 ⟸ XM_063275714
- Peptide Label:	isoform X12
- UniProtKB:	A6KNZ9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104494 ⟸ ENSRNOT00000149366

Ensembl Acc Id:

ENSRNOP00000112432 ⟸ ENSRNOT00000129353

Protein Domains

RRM SAC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O55207-F1-model_v2	AlphaFold	O55207	1-1496	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689606

Promoter ID:

EPDNEW_R127

Type:

multiple initiation site

Name:

Synj2_1

Description:

synaptojanin 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	46,836,028 - 46,836,088	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69436	AgrOrtholog
BIND	129613
	129615
	129616
	144351
BioCyc Gene	G2FUF-61629	BioCyc
Ensembl Genes	ENSRNOG00000017114	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000066798	ENTREZGENE
	ENSRNOT00000067661	ENTREZGENE
	ENSRNOT00000068476	ENTREZGENE
	ENSRNOT00000129353	ENTREZGENE
	ENSRNOT00000149366	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
	3.60.10.10	UniProtKB/Swiss-Prot
InterPro	DUF1866	UniProtKB/Swiss-Prot
	Endo/exonu/phosph_ase_sf	UniProtKB/Swiss-Prot
	IP5	UniProtKB/Swiss-Prot
	IPPc	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	SAC_dom	UniProtKB/Swiss-Prot
	SYNJ2_RRM	UniProtKB/Swiss-Prot
KEGG Report	rno:84018	UniProtKB/Swiss-Prot
NCBI Gene	84018	ENTREZGENE
PANTHER	INOSITOL 5-PHOSPHATASE	UniProtKB/Swiss-Prot
	PTHR11200:SF148	UniProtKB/Swiss-Prot
Pfam	DUF1866	UniProtKB/Swiss-Prot
	Exo_endo_phos2	UniProtKB/Swiss-Prot
	Syja_N	UniProtKB/Swiss-Prot
PhenoGen	Synj2	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
	SAC	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000017114	RatGTEx
SMART	DUF1866	UniProtKB/Swiss-Prot
	IPPc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
	SSF56219	UniProtKB/Swiss-Prot
TIGR	TC233057
UniProt	A0ABK0LLY7_RAT	UniProtKB/TrEMBL
	A0ABK0LNE2_RAT	UniProtKB/TrEMBL
	A6KNZ4	ENTREZGENE, UniProtKB/TrEMBL
	A6KNZ5	ENTREZGENE, UniProtKB/TrEMBL
	A6KNZ6	ENTREZGENE, UniProtKB/TrEMBL
	A6KNZ7	ENTREZGENE, UniProtKB/TrEMBL
	A6KNZ8	ENTREZGENE, UniProtKB/TrEMBL
	A6KNZ9	ENTREZGENE, UniProtKB/TrEMBL
	F1LPP1	ENTREZGENE, UniProtKB/TrEMBL
	F1M0S5	ENTREZGENE, UniProtKB/TrEMBL
	F1M2D6	ENTREZGENE, UniProtKB/TrEMBL
	O55207	ENTREZGENE
	Q91ZD8	ENTREZGENE
	Q91ZD9	ENTREZGENE
	SYNJ2_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q91ZD8	UniProtKB/Swiss-Prot
	Q91ZD9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Synj2	synaptojanin 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains an N-terminal region homologous to yeast Sac1p, a central inositol 5-phosphatase domain, and a C-terminal region mediating protein-protein interactions	628465
gene_expression	ubiquitously expressed	628465
gene_product	member of the family of phosphoinositide phosphatases	628465
gene_protein	protein contains 1248 aa residues of 140 kDa	69390

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)