Sycp2 (synaptonemal complex protein 2) - Rat Genome Database

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Gene: Sycp2 (synaptonemal complex protein 2) Rattus norvegicus
Analyze
Symbol: Sycp2
Name: synaptonemal complex protein 2
RGD ID: 69429
Description: Predicted to enable DNA binding activity. Predicted to be involved in cell division and meiotic cell cycle. Predicted to act upstream of or within several processes, including male genitalia morphogenesis; meiotic nuclear division; and negative regulation of apoptotic process. Located in lateral element. Human ortholog(s) of this gene implicated in spermatogenic failure 1. Orthologous to human SYCP2 (synaptonemal complex protein 2); INTERACTS WITH 2-ethoxyethanol; 2-methoxyethanol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: rnSCP2; SCP-2; synaptonemal complex lateral element protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83185,814,033 - 185,876,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3185,814,035 - 185,876,492 (-)EnsemblGRCr8
mRatBN7.23165,431,715 - 165,502,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3165,436,331 - 165,498,789 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3169,810,503 - 169,872,892 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03178,769,591 - 178,831,980 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03175,435,895 - 175,498,352 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03173,884,559 - 173,948,304 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3173,884,287 - 173,947,018 (-)Ensemblrn6Rnor6.0
Rnor_5.03183,144,181 - 183,206,650 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43167,437,522 - 167,502,083 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3167,063,122 - 167,125,089 (+)NCBICelera
RGSC_v3.13167,343,557 - 167,408,119 (-)NCBI
Cytogenetic Map3q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. SCP2: a major protein component of the axial elements of synaptonemal complexes of the rat. Offenberg HH, etal., Nucleic Acids Res 1998 Jun 1;26(11):2572-9.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Localization of SCP2 and SCP3 protein molecules within synaptonemal complexes of the rat. Schalk JA, etal., Chromosoma. 1998 Dec;107(8):540-8.
9. Proteomics profiling of nuclear proteins for kidney fibroblasts suggests hypoxia, meiosis, and cancer may meet in the nucleus. Shakib K, etal., Proteomics. 2005 Jul;5(11):2819-38.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:10341103   PMID:10652260   PMID:16717126   PMID:18283110   PMID:18316482   PMID:19034475   PMID:22011390   PMID:22164254   PMID:22711701   PMID:23133398   PMID:26362258  


Genomics

Comparative Map Data
Sycp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83185,814,033 - 185,876,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3185,814,035 - 185,876,492 (-)EnsemblGRCr8
mRatBN7.23165,431,715 - 165,502,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3165,436,331 - 165,498,789 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3169,810,503 - 169,872,892 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03178,769,591 - 178,831,980 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03175,435,895 - 175,498,352 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03173,884,559 - 173,948,304 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3173,884,287 - 173,947,018 (-)Ensemblrn6Rnor6.0
Rnor_5.03183,144,181 - 183,206,650 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43167,437,522 - 167,502,083 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3167,063,122 - 167,125,089 (+)NCBICelera
RGSC_v3.13167,343,557 - 167,408,119 (-)NCBI
Cytogenetic Map3q43NCBI
SYCP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,863,571 - 59,933,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,863,564 - 59,933,655 (-)Ensemblhg38GRCh38
GRCh372058,438,626 - 58,508,692 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,872,013 - 57,940,604 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342057,872,013 - 57,940,604NCBI
Celera2055,179,316 - 55,247,887 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2055,225,354 - 55,294,509 (-)NCBIHuRef
CHM1_12058,339,676 - 58,408,271 (-)NCBICHM1_1
T2T-CHM13v2.02061,647,855 - 61,717,909 (-)NCBIT2T-CHM13v2.0
Sycp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392177,987,088 - 178,051,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2177,987,086 - 178,049,478 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382178,345,295 - 178,407,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2178,345,293 - 178,407,685 (-)Ensemblmm10GRCm38
MGSCv372178,080,000 - 178,142,363 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362178,274,701 - 178,333,233 (-)NCBIMGSCv36mm8
Celera2182,431,695 - 182,494,066 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.81NCBI
Sycp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555283,809,438 - 3,886,312 (+)Ensembl
ChiLan1.0NW_0049555283,809,438 - 3,887,055 (+)NCBIChiLan1.0ChiLan1.0
SYCP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,629,849 - 65,702,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12065,622,971 - 65,695,156 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02056,219,579 - 56,289,382 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12057,571,625 - 57,639,701 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2057,571,935 - 57,629,016 (-)EnsemblpanPan2panpan1.1
SYCP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12444,471,516 - 44,546,501 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2444,471,828 - 44,546,495 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2443,715,727 - 43,795,976 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02445,337,831 - 45,418,204 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12444,438,620 - 44,514,644 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02444,557,526 - 44,639,319 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02445,219,139 - 45,299,307 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sycp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,810,574 - 192,894,218 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365148,264,628 - 8,331,577 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYCP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1759,875,993 - 59,955,209 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11759,875,992 - 59,962,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21767,296,749 - 67,373,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYCP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.124,214,713 - 4,283,451 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl24,226,063 - 4,282,751 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605052,270,245 - 52,325,619 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sycp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474126,122,385 - 26,203,154 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474126,108,446 - 26,208,184 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sycp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15155,416,157 - 155,473,030 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:80
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000006038
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat

Markers in Region
D3Got171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23165,443,122 - 165,443,343 (+)MAPPERmRatBN7.2
Rnor_6.03173,891,353 - 173,891,573NCBIRnor6.0
Rnor_5.03183,199,638 - 183,199,858UniSTSRnor5.0
RGSC_v3.43167,444,313 - 167,444,534RGDRGSC3.4
RGSC_v3.43167,444,314 - 167,444,534UniSTSRGSC3.4
Celera3167,118,093 - 167,118,313UniSTS
RGSC_v3.13167,350,350 - 167,350,570RGD
RH 3.4 Map31501.1UniSTS
RH 3.4 Map31501.1RGD
RH 2.0 Map31020.4RGD
Cytogenetic Map3q43UniSTS
G65197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23165,464,853 - 165,465,426 (+)MAPPERmRatBN7.2
Rnor_6.03173,913,084 - 173,913,656NCBIRnor6.0
Rnor_5.03183,177,702 - 183,178,274UniSTSRnor5.0
RGSC_v3.43167,467,481 - 167,468,053UniSTSRGSC3.4
Celera3167,096,464 - 167,097,036UniSTS
Cytogenetic Map3q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 9 64 161 77 76 45 88 45 6 326 182 11 140 75 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000078047   ⟹   ENSRNOP00000070540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3185,814,035 - 185,876,492 (-)Ensembl
mRatBN7.2 Ensembl3165,436,331 - 165,498,789 (-)Ensembl
Rnor_6.0 Ensembl3173,884,561 - 173,947,018 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079019   ⟹   ENSRNOP00000075596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3185,814,035 - 185,876,492 (-)Ensembl
mRatBN7.2 Ensembl3165,436,331 - 165,498,783 (-)Ensembl
Rnor_6.0 Ensembl3173,884,287 - 173,944,396 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153265   ⟹   ENSRNOP00000107503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3185,814,035 - 185,871,347 (-)Ensembl
RefSeq Acc Id: NM_130735   ⟹   NP_570091
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,035 - 185,876,492 (-)NCBI
mRatBN7.23165,436,331 - 165,498,789 (-)NCBI
Rnor_6.03173,884,561 - 173,947,018 (-)NCBI
Rnor_5.03183,144,181 - 183,206,650 (+)NCBI
RGSC_v3.43167,437,522 - 167,502,083 (-)RGD
Celera3167,063,122 - 167,125,089 (+)RGD
Sequence:
RefSeq Acc Id: XM_039105970   ⟹   XP_038961898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,864,448 (-)NCBI
mRatBN7.23165,431,715 - 165,486,745 (-)NCBI
RefSeq Acc Id: XM_063284678   ⟹   XP_063140748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,516 (-)NCBI
RefSeq Acc Id: XM_063284679   ⟹   XP_063140749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,455 (-)NCBI
RefSeq Acc Id: XM_063284680   ⟹   XP_063140750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,288 (-)NCBI
RefSeq Acc Id: XM_063284681   ⟹   XP_063140751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,516 (-)NCBI
RefSeq Acc Id: XM_063284682   ⟹   XP_063140752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,433 (-)NCBI
RefSeq Acc Id: XM_063284683   ⟹   XP_063140753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,286 (-)NCBI
RefSeq Acc Id: XM_063284684   ⟹   XP_063140754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,814,033 - 185,876,516 (-)NCBI
RefSeq Acc Id: NP_570091   ⟸   NM_130735
- UniProtKB: O70608 (UniProtKB/Swiss-Prot),   A0A8L2R2I5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075596   ⟸   ENSRNOT00000079019
Ensembl Acc Id: ENSRNOP00000070540   ⟸   ENSRNOT00000078047
RefSeq Acc Id: XP_038961898   ⟸   XM_039105970
- Peptide Label: isoform X4
- UniProtKB: A0A8L2RBT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140751   ⟸   XM_063284681
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R2I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140754   ⟸   XM_063284684
- Peptide Label: isoform X3
- UniProtKB: A0A8L2R2I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140748   ⟸   XM_063284678
- Peptide Label: isoform X1
- UniProtKB: O70608 (UniProtKB/Swiss-Prot),   A0A8L2R2I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140749   ⟸   XM_063284679
- Peptide Label: isoform X1
- UniProtKB: O70608 (UniProtKB/Swiss-Prot),   A0A8L2R2I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140752   ⟸   XM_063284682
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R2I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140750   ⟸   XM_063284680
- Peptide Label: isoform X1
- UniProtKB: O70608 (UniProtKB/Swiss-Prot),   A0A8L2R2I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140753   ⟸   XM_063284683
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R2I5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107503   ⟸   ENSRNOT00000153265
Protein Domains
Synaptonemal complex protein 2 armadillo-repeat-   Synaptonemal complex protein 2 Spt16M-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70608-F1-model_v2 AlphaFold O70608 1-1505 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692727
Promoter ID:EPDNEW_R3251
Type:multiple initiation site
Name:Sycp2_1
Description:synaptonemal complex protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03173,946,986 - 173,947,046EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69429 AgrOrtholog
BioCyc Gene G2FUF-46401 BioCyc
Ensembl Genes ENSRNOG00000061690 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000079019 ENTREZGENE
  ENSRNOT00000153265 ENTREZGENE
InterPro ARM-type_fold UniProtKB/Swiss-Prot
  SYCP1/2 UniProtKB/Swiss-Prot
  SYCP2_ARLD UniProtKB/Swiss-Prot
  SYCP2_SLD UniProtKB/Swiss-Prot
KEGG Report rno:83820 UniProtKB/Swiss-Prot
NCBI Gene 83820 ENTREZGENE
PANTHER PTHR15607 UniProtKB/Swiss-Prot
  PTHR15607:SF12 UniProtKB/Swiss-Prot
Pfam SYCP2_ARLD UniProtKB/Swiss-Prot
  SYCP2_SLD UniProtKB/Swiss-Prot
PhenoGen Sycp2 PhenoGen
RatGTEx ENSRNOG00000061690 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
TIGR TC210568
UniProt A0A8L2R2I5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RBT5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LAE5_RAT UniProtKB/TrEMBL
  A6KME8_RAT UniProtKB/TrEMBL
  A6KME9_RAT UniProtKB/TrEMBL
  O70608 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Sycp2  synaptonemal complex protein 2      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed specifically in the testis, in meiotic prophase cells 69387
gene_function may be a DNA-binding protein 69387
gene_protein molecular mass of 173 kDa 69387