Asah2 (N-acylsphingosine amidohydrolase 2) - Rat Genome Database

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Gene: Asah2 (N-acylsphingosine amidohydrolase 2) Rattus norvegicus
Analyze
Symbol: Asah2
Name: N-acylsphingosine amidohydrolase 2
RGD ID: 69410
Description: Enables N-acylsphingosine amidohydrolase activity. Involved in ceramide biosynthetic process; ceramide catabolic process; and sphingosine biosynthetic process. Located in extracellular space; mitochondrion; and plasma membrane. Colocalizes with membrane raft. Orthologous to several human genes including ASAH2 (N-acylsphingosine amidohydrolase 2); PARTICIPATES IN sphingolipid metabolic pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acylsphingosine deacylase 2; N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2; N-CDase; NCDase; neutral ceramidase; neutral/alkaline ceramidase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,278,994 - 239,386,598 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1239,278,994 - 239,382,024 (-)EnsemblGRCr8
mRatBN7.21229,865,662 - 229,973,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,865,662 - 229,939,162 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1238,231,511 - 238,304,901 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,161,187 - 245,234,587 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01237,990,171 - 238,070,306 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,557,042 - 250,665,083 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,557,044 - 250,630,677 (-)Ensemblrn6Rnor6.0
Rnor_5.01257,790,747 - 257,898,648 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41236,000,768 - 236,072,477 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1226,986,485 - 227,059,852 (-)NCBICelera
RGSC_v3.11236,164,792 - 236,236,500 (-)NCBI
Cytogenetic Map1q52NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
furan  (EXP)
inulin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
N,N-dimethylsphingosine  (ISO)
N-hexadecanoylsphingosine  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
caveola  (IEA,ISO,ISS)
cytoplasm  (IEA)
extracellular exosome  (ISO,ISS)
extracellular region  (IBA,IEA)
extracellular space  (IDA,ISO)
Golgi apparatus  (ISO,ISS)
Golgi membrane  (IEA)
membrane  (IEA,ISO)
membrane raft  (IDA,IEA)
mitochondrion  (IDA,ISO)
plasma membrane  (IDA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Purification and characterization of a membrane-bound nonlysosomal ceramidase from rat brain. El Bawab S, etal., J Biol Chem. 1999 Sep 24;274(39):27948-55.
2. Biochemical characterization of the reverse activity of rat brain ceramidase. A CoA-independent and fumonisin B1-insensitive ceramide synthase. El Bawab S, etal., J Biol Chem. 2001 May 18;276(20):16758-66. doi: 10.1074/jbc.M009331200. Epub 2001 Feb 8.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Design, synthesis and activity as acid ceramidase inhibitors of 2-oxooctanoyl and N-oleoylethanolamine analogues. Grijalvo S, etal., Chem Phys Lipids. 2006 Oct;144(1):69-84. Epub 2006 Aug 7.
5. Proteasomal activation mediates down-regulation of inositol 1,4,5-trisphosphate receptor and calcium mobilization in rat pancreatic islets. Lee B, etal., Endocrinology 2001 May;142(5):1744-51.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Purification, characterization, molecular cloning, and subcellular distribution of neutral ceramidase of rat kidney. Mitsutake S, etal., J Biol Chem 2001 Jul 13;276(28):26249-59.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Novel pathway of ceramide production in mitochondria: thioesterase and neutral ceramidase produce ceramide from sphingosine and acyl-CoA. Novgorodov SA, etal., J Biol Chem. 2011 Jul 15;286(28):25352-62. doi: 10.1074/jbc.M110.214866. Epub 2011 May 25.
10. Rat intestinal ceramidase: purification, properties, and physiological relevance. Olsson M, etal., Am J Physiol Gastrointest Liver Physiol. 2004 Oct;287(4):G929-37. doi: 10.1152/ajpgi.00155.2004. Epub 2004 Jun 24.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. GOA pipeline RGD automated data pipeline
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. O-glycosylation of mucin-like domain retains the neutral ceramidase on the plasma membranes as a type II integral membrane protein. Tani M, etal., J Biol Chem. 2003 Mar 21;278(12):10523-30. doi: 10.1074/jbc.M207932200. Epub 2002 Dec 23.
15. Conserved amino acid residues in the COOH-terminal tail are indispensable for the correct folding and localization and enzyme activity of neutral ceramidase. Tani M, etal., J Biol Chem. 2004 Jul 9;279(28):29351-8. doi: 10.1074/jbc.M404012200. Epub 2004 May 3.
Additional References at PubMed
PMID:10652340   PMID:10753931   PMID:10781606   PMID:11330410   PMID:11457826   PMID:12359735   PMID:12482609   PMID:12921776   PMID:14651853   PMID:15946935   PMID:16126722   PMID:16229686  
PMID:16380386   PMID:17204455   PMID:17475390   PMID:18430368   PMID:18614015   PMID:19088069   PMID:19345744   PMID:21597176   PMID:24798654   PMID:26190575   PMID:30154232   PMID:34610358  


Genomics

Comparative Map Data
Asah2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,278,994 - 239,386,598 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1239,278,994 - 239,382,024 (-)EnsemblGRCr8
mRatBN7.21229,865,662 - 229,973,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,865,662 - 229,939,162 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1238,231,511 - 238,304,901 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,161,187 - 245,234,587 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01237,990,171 - 238,070,306 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,557,042 - 250,665,083 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,557,044 - 250,630,677 (-)Ensemblrn6Rnor6.0
Rnor_5.01257,790,747 - 257,898,648 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41236,000,768 - 236,072,477 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1226,986,485 - 227,059,852 (-)NCBICelera
RGSC_v3.11236,164,792 - 236,236,500 (-)NCBI
Cytogenetic Map1q52NCBI
ASAH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381050,184,861 - 50,251,516 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1050,182,778 - 50,279,720 (-)Ensemblhg38GRCh38
GRCh371051,944,621 - 52,011,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361051,617,078 - 51,678,319 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1075,112,386 - 75,164,225 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1045,946,293 - 46,007,775 (-)NCBIHuRef
CHM1_11052,228,873 - 52,290,233 (-)NCBICHM1_1
T2T-CHM13v2.01051,033,047 - 51,099,700 (-)NCBIT2T-CHM13v2.0
Asah2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391931,962,046 - 32,080,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1931,959,997 - 32,085,611 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381931,984,646 - 32,103,140 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1931,982,597 - 32,108,211 (-)Ensemblmm10GRCm38
MGSCv371932,059,136 - 32,177,630 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361932,050,643 - 32,169,137 (-)NCBIMGSCv36mm8
Celera1932,772,701 - 32,889,548 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1926.58NCBI
Asah2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,840,355 - 5,931,891 (+)Ensembl
ChiLan1.0NW_0049554255,840,355 - 5,931,891 (+)NCBIChiLan1.0ChiLan1.0
LOC100985247
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2862,502,517 - 62,565,185 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11062,522,499 - 62,565,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01046,842,830 - 46,908,811 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11048,970,524 - 49,025,245 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1048,969,434 - 49,025,336 (-)EnsemblpanPan2panpan1.1
ASAH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12637,136,601 - 37,228,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2637,136,897 - 37,218,783 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2637,022,117 - 37,103,999 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02638,669,614 - 38,751,828 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2638,669,925 - 38,763,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12636,577,467 - 36,659,447 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02636,157,741 - 36,239,965 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02637,398,030 - 37,480,024 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Asah2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721376,700,488 - 76,788,640 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367352,031,844 - 2,092,347 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367352,004,373 - 2,092,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASAH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,025,005 - 99,129,100 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11499,018,111 - 99,141,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214107,865,243 - 107,969,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASAH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1980,409,649 - 80,501,527 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl980,409,478 - 80,476,731 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604841,060,629 - 41,133,632 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asah2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479112,907,485 - 13,059,005 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479112,906,908 - 13,059,033 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Asah2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1232,046,031 - 32,139,376 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Asah2
1099 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000016688
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367243666627Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1223964326248681945Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238398865255849249Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228180243255849249Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 39 59 6 303 139 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB057433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016688   ⟹   ENSRNOP00000016688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1239,278,994 - 239,352,493 (-)Ensembl
mRatBN7.2 Ensembl1229,865,662 - 229,939,162 (-)Ensembl
Rnor_6.0 Ensembl1250,559,467 - 250,630,677 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077135   ⟹   ENSRNOP00000073116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1239,278,994 - 239,382,024 (-)Ensembl
mRatBN7.2 Ensembl1229,865,662 - 229,939,162 (-)Ensembl
Rnor_6.0 Ensembl1250,557,044 - 250,626,844 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128918   ⟹   ENSRNOP00000104976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1239,278,994 - 239,382,024 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000159560   ⟹   ENSRNOP00000105598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1239,307,635 - 239,352,493 (-)Ensembl
RefSeq Acc Id: NM_053646   ⟹   NP_446098
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,352,493 (-)NCBI
mRatBN7.21229,865,662 - 229,939,162 (-)NCBI
Rnor_6.01250,557,042 - 250,630,729 (-)NCBI
Rnor_5.01257,790,747 - 257,898,648 (-)NCBI
RGSC_v3.41236,000,768 - 236,072,477 (-)RGD
Celera1226,986,485 - 227,059,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231263   ⟹   XP_006231325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
Rnor_6.01250,557,042 - 250,665,083 (-)NCBI
Rnor_5.01257,790,747 - 257,898,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231270   ⟹   XP_006231332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
Rnor_6.01250,557,042 - 250,665,083 (-)NCBI
Rnor_5.01257,790,747 - 257,898,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760320   ⟹   XP_008758542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
Rnor_6.01250,557,042 - 250,665,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588647   ⟹   XP_017444136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,582 (-)NCBI
mRatBN7.21229,865,662 - 229,969,247 (-)NCBI
Rnor_6.01250,557,042 - 250,662,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588648   ⟹   XP_017444137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,582 (-)NCBI
mRatBN7.21229,865,662 - 229,969,247 (-)NCBI
Rnor_6.01250,557,042 - 250,662,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588650   ⟹   XP_017444139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,582 (-)NCBI
mRatBN7.21229,865,662 - 229,969,247 (-)NCBI
Rnor_6.01250,557,042 - 250,662,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039106873   ⟹   XP_038962801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,582 (-)NCBI
mRatBN7.21229,865,662 - 229,969,247 (-)NCBI
RefSeq Acc Id: XM_039106878   ⟹   XP_038962806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,582 (-)NCBI
mRatBN7.21229,865,662 - 229,969,247 (-)NCBI
RefSeq Acc Id: XM_039106879   ⟹   XP_038962807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
RefSeq Acc Id: XM_039106911   ⟹   XP_038962839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,582 (-)NCBI
mRatBN7.21229,865,662 - 229,969,247 (-)NCBI
RefSeq Acc Id: XM_039106988   ⟹   XP_038962916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
RefSeq Acc Id: XM_039107021   ⟹   XP_038962949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
RefSeq Acc Id: XM_039107050   ⟹   XP_038962978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,583 (-)NCBI
mRatBN7.21229,865,662 - 229,969,248 (-)NCBI
RefSeq Acc Id: XM_039107084   ⟹   XP_038963012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,583 (-)NCBI
mRatBN7.21229,865,662 - 229,969,248 (-)NCBI
RefSeq Acc Id: XM_039107116   ⟹   XP_038963044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,583 (-)NCBI
mRatBN7.21229,865,662 - 229,969,248 (-)NCBI
RefSeq Acc Id: XM_039107153   ⟹   XP_038963081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
mRatBN7.21229,865,662 - 229,973,253 (-)NCBI
RefSeq Acc Id: XM_063262182   ⟹   XP_063118252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,386,598 (-)NCBI
RefSeq Acc Id: XM_063262235   ⟹   XP_063118305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81239,278,994 - 239,382,583 (-)NCBI
Protein Sequences
Protein RefSeqs NP_446098 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231325 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231332 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758542 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444136 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444137 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444139 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962801 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962806 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962916 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963012 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963044 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963081 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118252 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118305 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB62033 (Get FASTA)   NCBI Sequence Viewer  
  EDM13131 (Get FASTA)   NCBI Sequence Viewer  
  EDM13132 (Get FASTA)   NCBI Sequence Viewer  
  EDM13133 (Get FASTA)   NCBI Sequence Viewer  
  EDM13134 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073116
  ENSRNOP00000073116.1
  ENSRNOP00000104976
GenBank Protein Q91XT9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446098   ⟸   NM_053646
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231325   ⟸   XM_006231263
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231332   ⟸   XM_006231270
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758542   ⟸   XM_008760320
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444139   ⟸   XM_017588650
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444137   ⟸   XM_017588648
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444136   ⟸   XM_017588647
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073116   ⟸   ENSRNOT00000077135
Ensembl Acc Id: ENSRNOP00000016688   ⟸   ENSRNOT00000016688
RefSeq Acc Id: XP_038962949   ⟸   XM_039107021
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962916   ⟸   XM_039106988
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963081   ⟸   XM_039107153
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962807   ⟸   XM_039106879
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963012   ⟸   XM_039107084
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962978   ⟸   XM_039107050
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963044   ⟸   XM_039107116
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962839   ⟸   XM_039106911
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962806   ⟸   XM_039106878
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962801   ⟸   XM_039106873
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A6I102 (UniProtKB/TrEMBL),   A0A8L2Q853 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118252   ⟸   XM_063262182
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A0A8L2Q853 (UniProtKB/TrEMBL),   A6I102 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118305   ⟸   XM_063262235
- Peptide Label: isoform X1
- UniProtKB: Q91XT9 (UniProtKB/Swiss-Prot),   A0A8L2Q853 (UniProtKB/TrEMBL),   A6I102 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105598   ⟸   ENSRNOT00000159560
Ensembl Acc Id: ENSRNOP00000104976   ⟸   ENSRNOT00000128918
Protein Domains
Neutral/alkaline non-lysosomal ceramidase C-   Neutral/alkaline non-lysosomal ceramidase N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91XT9-F1-model_v2 AlphaFold Q91XT9 1-761 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690856
Promoter ID:EPDNEW_R1381
Type:initiation region
Name:Asah2_1
Description:N-acylsphingosine amidohydrolase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01250,630,734 - 250,630,794EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69410 AgrOrtholog
BioCyc Gene G2FUF-55925 BioCyc
Ensembl Genes ENSRNOG00000012196 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077135 ENTREZGENE
  ENSRNOT00000077135.2 UniProtKB/Swiss-Prot
  ENSRNOT00000128918 ENTREZGENE
Gene3D-CATH 2.60.40.2300 UniProtKB/Swiss-Prot
InterPro Ceramidase_alk UniProtKB/Swiss-Prot
  NCDase_C_sf UniProtKB/Swiss-Prot
  NEUT/ALK_ceramidase_C UniProtKB/Swiss-Prot
  NEUT/ALK_ceramidase_N UniProtKB/Swiss-Prot
KEGG Report rno:114104 UniProtKB/Swiss-Prot
NCBI Gene 114104 ENTREZGENE
PANTHER NEUTRAL CERAMIDASE UniProtKB/Swiss-Prot
  PTHR12670 UniProtKB/Swiss-Prot
Pfam Ceramidase_alk UniProtKB/Swiss-Prot
  Ceramidse_alk_C UniProtKB/Swiss-Prot
PhenoGen Asah2 PhenoGen
RatGTEx ENSRNOG00000012196 RatGTEx
UniProt A0A8L2Q853 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LHE7_RAT UniProtKB/TrEMBL
  A0ABK0LPR1_RAT UniProtKB/TrEMBL
  A6I102 ENTREZGENE, UniProtKB/TrEMBL
  ASAH2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-29 Asah2  N-acylsphingosine amidohydrolase 2  Asah2  N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Asah2  N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2  Asah2  N-acylsphingosine amidohydrolase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Asah2  N-acylsphingosine amidohydrolase 2      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localizes to the apical membrane in kidney and endosome-like organelles in liver 68675
gene_disease deficiency may cause Farber disease 68675
gene_disease deficiency may cause Farber disease 68695
gene_expression mainly localized at the apical membrane of proximal tubules, distal tubules, and collecting ducts in kidney, while in liver the enzyme was distributed with endosome-like organelles in hepatocytes 68675
gene_expression mainly localized at the apical membrane of proximal tubules, distal tubules, and collecting ducts in kidney, while in liver the enzyme was distributed with endosome-like organelles in hepatocytes 68695
gene_function hydrolyzes the N-acyl linkage of ceramide to produce sphingosine 68675
gene_function hydrolyzes the N-acyl linkage of ceramide to produce sphingosine 68695
gene_process may modulate sphingolipid- mediated signaling 68675
gene_process may modulate sphingolipid- mediated signaling 68695