Synj2bp (synaptojanin 2 binding protein) - Rat Genome Database

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Gene: Synj2bp (synaptojanin 2 binding protein) Rattus norvegicus
Analyze
Symbol: Synj2bp
Name: synaptojanin 2 binding protein
RGD ID: 69400
Description: Predicted to enable type II activin receptor binding activity. Involved in intracellular distribution of mitochondria. Located in mitochondrial outer membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: mitochondrial outer membrane protein 25; NPW16; Omp25; outer membrane protein; synaptojanin-2-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86106,920,970 - 106,958,653 (-)NCBIGRCr8
mRatBN7.26101,189,714 - 101,227,400 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6101,189,714 - 101,227,406 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6101,344,901 - 101,382,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06101,644,086 - 101,681,768 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06101,016,608 - 101,054,310 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06105,224,166 - 105,261,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6105,224,166 - 105,261,549 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06113,370,333 - 113,407,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46105,352,102 - 105,389,779 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16105,356,721 - 105,393,256 (-)NCBI
Celera699,029,620 - 99,067,302 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The Abl/Arg substrate ArgBP2/nArgBP2 coordinates the function of multiple regulatory mechanisms converging on the actin cytoskeleton. Cestra G, etal., Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1731-6. Epub 2005 Jan 19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Recruitment of an alternatively spliced form of synaptojanin 2 to mitochondria by the interaction with the PDZ domain of a mitochondrial outer membrane protein. Nemoto Y and De Camilli P, EMBO J 1999 Jun 1;18(11):2991-3006.
6. Identification and characterization of a synaptojanin 2 splice isoform predominantly expressed in nerve terminals. Nemoto Y, etal., J Biol Chem 2001 Nov 2;276(44):41133-42.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11882656   PMID:12477932   PMID:16648306   PMID:18845145   PMID:22871113   PMID:24025447  


Genomics

Comparative Map Data
Synj2bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86106,920,970 - 106,958,653 (-)NCBIGRCr8
mRatBN7.26101,189,714 - 101,227,400 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6101,189,714 - 101,227,406 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6101,344,901 - 101,382,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06101,644,086 - 101,681,768 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06101,016,608 - 101,054,310 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06105,224,166 - 105,261,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6105,224,166 - 105,261,549 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06113,370,333 - 113,407,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46105,352,102 - 105,389,779 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16105,356,721 - 105,393,256 (-)NCBI
Celera699,029,620 - 99,067,302 (-)NCBICelera
Cytogenetic Map6q24NCBI
SYNJ2BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381470,366,499 - 70,417,090 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1470,366,499 - 70,417,090 (-)EnsemblGRCh38hg38GRCh38
GRCh371470,833,216 - 70,883,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361469,902,966 - 69,953,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 341469,908,626 - 69,953,515NCBI
Celera1450,897,314 - 50,948,137 (-)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1451,001,739 - 51,052,566 (-)NCBIHuRef
CHM1_11470,771,326 - 70,821,956 (-)NCBICHM1_1
T2T-CHM13v2.01464,572,381 - 64,623,200 (-)NCBIT2T-CHM13v2.0
Synj2bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391281,538,968 - 81,579,685 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1281,544,715 - 81,579,685 (-)EnsemblGRCm39 Ensembl
GRCm381281,492,194 - 81,532,911 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1281,497,941 - 81,532,911 (-)EnsemblGRCm38mm10GRCm38
MGSCv371282,593,181 - 82,633,894 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361282,416,789 - 82,451,755 (-)NCBIMGSCv36mm8
Celera1282,957,743 - 82,999,110 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1237.73NCBI
Synj2bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546680,766 - 121,980 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546680,766 - 127,383 (+)NCBIChiLan1.0ChiLan1.0
SYNJ2BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21571,489,316 - 71,539,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11470,705,829 - 70,756,314 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01450,958,861 - 51,009,395 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11469,829,082 - 69,879,537 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1469,835,548 - 69,879,537 (-)Ensemblpanpan1.1panPan2
SYNJ2BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1844,044,526 - 44,079,002 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl844,044,526 - 44,079,002 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha843,727,903 - 43,762,384 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0844,267,979 - 44,302,474 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl844,263,840 - 44,302,537 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1843,882,482 - 43,916,952 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0843,955,881 - 43,990,355 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0844,316,315 - 44,350,794 (-)NCBIUU_Cfam_GSD_1.0
LOC101967553
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864060,681,189 - 60,745,379 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649513,482,975 - 13,510,693 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493649513,444,726 - 13,471,914 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649513,446,325 - 13,510,495 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNJ2BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl793,906,182 - 93,974,444 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1793,906,182 - 93,974,336 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,228,872 - 100,248,552 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103229268
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12447,612,405 - 47,658,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2447,612,975 - 47,629,109 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605335,827,634 - 35,873,728 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Synj2bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473430,726,177 - 30,775,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473430,726,204 - 30,775,166 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Synj2bp
70 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000009122
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat

Markers in Region
D6Wox35  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26101,194,395 - 101,194,642 (+)MAPPERmRatBN7.2
Rnor_6.06105,228,848 - 105,229,094NCBIRnor6.0
Rnor_5.06113,375,015 - 113,375,261UniSTSRnor5.0
RGSC_v3.46105,356,784 - 105,357,030UniSTSRGSC3.4
Celera699,034,302 - 99,034,548UniSTS
Cytogenetic Map6q24UniSTS
RH142239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26101,194,939 - 101,195,096 (+)MAPPERmRatBN7.2
Rnor_6.06105,229,392 - 105,229,548NCBIRnor6.0
Rnor_5.06113,375,559 - 113,375,715UniSTSRnor5.0
RGSC_v3.46105,357,328 - 105,357,484UniSTSRGSC3.4
Celera699,034,846 - 99,035,002UniSTS
RH 3.4 Map6729.9UniSTS
Cytogenetic Map6q24UniSTS
RH128763  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26101,191,697 - 101,191,888 (+)MAPPERmRatBN7.2
Rnor_6.06105,226,150 - 105,226,340NCBIRnor6.0
Rnor_5.06113,372,317 - 113,372,507UniSTSRnor5.0
RGSC_v3.46105,354,086 - 105,354,276UniSTSRGSC3.4
Celera699,031,604 - 99,031,794UniSTS
RH 3.4 Map6729.49UniSTS
Cytogenetic Map6q24UniSTS
RH129534  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26101,192,605 - 101,192,804 (+)MAPPERmRatBN7.2
Rnor_6.06105,227,058 - 105,227,256NCBIRnor6.0
Rnor_5.06113,373,225 - 113,373,423UniSTSRnor5.0
RGSC_v3.46105,354,994 - 105,355,192UniSTSRGSC3.4
Celera699,032,512 - 99,032,710UniSTS
RH 3.4 Map6729.9UniSTS
Cytogenetic Map6q24UniSTS
RH129934  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26101,194,768 - 101,194,919 (+)MAPPERmRatBN7.2
Rnor_6.06105,229,221 - 105,229,371NCBIRnor6.0
Rnor_5.06113,375,388 - 113,375,538UniSTSRnor5.0
RGSC_v3.46105,357,157 - 105,357,307UniSTSRGSC3.4
Celera699,034,675 - 99,034,825UniSTS
RH 3.4 Map6730.7UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 14 41 8 11 73 35 39 11 8
Low 5 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000009122   ⟹   ENSRNOP00000009119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6101,189,714 - 101,227,400 (-)Ensembl
Rnor_6.0 Ensembl6105,224,166 - 105,261,549 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115470   ⟹   ENSRNOP00000094045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6101,194,724 - 101,227,406 (-)Ensembl
RefSeq Acc Id: NM_022599   ⟹   NP_072121
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86106,920,970 - 106,958,653 (-)NCBI
mRatBN7.26101,189,714 - 101,227,400 (-)NCBI
Rnor_6.06105,224,166 - 105,261,549 (-)NCBI
Rnor_5.06113,370,333 - 113,407,716 (-)NCBI
RGSC_v3.46105,352,102 - 105,389,779 (-)RGD
Celera699,029,620 - 99,067,302 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_072121   ⟸   NM_022599
- UniProtKB: A0JN00 (UniProtKB/Swiss-Prot),   Q9WVJ4 (UniProtKB/Swiss-Prot),   A6JDM8 (UniProtKB/TrEMBL),   A0A8I6AL95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009119   ⟸   ENSRNOT00000009122
RefSeq Acc Id: ENSRNOP00000094045   ⟸   ENSRNOT00000115470
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WVJ4-F1-model_v2 AlphaFold Q9WVJ4 1-145 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694706
Promoter ID:EPDNEW_R5231
Type:initiation region
Name:Synj2bp_1
Description:synaptojanin 2 binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06105,261,563 - 105,261,623EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69400 AgrOrtholog
BIND 144351
BioCyc Gene G2FUF-36891 BioCyc
Ensembl Genes ENSRNOG00000006399 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019142 UniProtKB/Swiss-Prot
  ENSRNOG00060029888 UniProtKB/Swiss-Prot
  ENSRNOG00065017700 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009122 ENTREZGENE
  ENSRNOT00000009122.7 UniProtKB/Swiss-Prot
  ENSRNOT00000115470.1 UniProtKB/TrEMBL
  ENSRNOT00055032662 UniProtKB/Swiss-Prot
  ENSRNOT00060051957 UniProtKB/Swiss-Prot
  ENSRNOT00065029634 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7323715 IMAGE-MGC_LOAD
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64531 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:156495 IMAGE-MGC_LOAD
NCBI Gene 64531 ENTREZGENE
PANTHER DISCS LARGE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DISKS LARGE HOMOLOG 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Synj2bp PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006399 RatGTEx
  ENSRNOG00055019142 RatGTEx
  ENSRNOG00060029888 RatGTEx
  ENSRNOG00065017700 RatGTEx
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AL95 ENTREZGENE, UniProtKB/TrEMBL
  A0JN00 ENTREZGENE
  A6JDM7_RAT UniProtKB/TrEMBL
  A6JDM8 ENTREZGENE, UniProtKB/TrEMBL
  A6JDM9_RAT UniProtKB/TrEMBL
  A6JDN0_RAT UniProtKB/TrEMBL
  Q9WVJ4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0JN00 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Synj2bp  synaptojanin 2 binding protein      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_mutations_overexpression overexpression causes perinuclear clustering of mitochondria 69391