Prom1 (prominin 1) - Rat Genome Database

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Gene: Prom1 (prominin 1) Rattus norvegicus
Analyze
Symbol: Prom1
Name: prominin 1
RGD ID: 69367
Description: Predicted to enable actinin binding activity; cadherin binding activity; and cholesterol binding activity. Predicted to be involved in several processes, including glomerular epithelial cell differentiation; photoreceptor cell maintenance; and retina morphogenesis in camera-type eye. Predicted to be located in several cellular components, including brush border; extracellular exosome; and photoreceptor outer segment membrane. Predicted to be active in several cellular components, including apical plasma membrane; microvillus; and prominosome. Used to study diabetes mellitus. Human ortholog(s) of this gene implicated in cone-rod dystrophy 12; retinal macular dystrophy 2; and retinitis pigmentosa 41. Orthologous to human PROM1 (prominin 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD133; fudenine; MGC156650; Prom; prominin; prominin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,202,303 - 71,307,008 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1471,202,336 - 71,307,002 (+)EnsemblGRCr8
mRatBN7.21466,989,545 - 67,094,534 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1471,398,422 - 71,501,438 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,670,309 - 72,774,669 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,108,846 - 69,211,863 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,532,321 - 71,637,400 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,533,063 - 71,637,417 (+)Ensemblrn6Rnor6.0
Rnor_5.01471,573,130 - 71,668,097 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41472,122,986 - 72,230,453 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1465,949,815 - 66,052,606 (+)NCBICelera
RGSC_v3.11472,125,409 - 72,232,843 (+)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(20S)-ginsenoside Rg3  (ISO)
(S)-naringenin  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2-acetamidofluorene  (EXP)
2-butoxyethanol  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
ammonium chloride  (EXP)
Antrocin  (ISO)
apigenin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
auramine O  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butane-2,3-dione  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciprofloxacin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
crizotinib  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
daunorubicin  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
dicyclanil  (ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
eckol  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
Evodiamine  (ISO)
fisetin  (ISO)
folic acid  (ISO)
furan  (EXP,ISO)
genistein  (ISO)
glycidol  (EXP)
inulin  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lupeol  (ISO)
melatonin  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
microcystin-LR  (EXP)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
oxaliplatin  (EXP)
paclitaxel  (ISO)
pentane-2,3-dione  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl caffeate  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
prednisone  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
proanthocyanidin  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
pyrazinecarboxamide  (EXP)
quercetin  (ISO)
ritodrine  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
tributylstannane  (ISO)
Triptolide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP,ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
XMU-MP-1  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Hepatocyte-Specific Arid1a Deficiency Initiates Mouse Steatohepatitis and Hepatocellular Carcinoma. Fang JZ, etal., PLoS One. 2015 Nov 16;10(11):e0143042. doi: 10.1371/journal.pone.0143042. eCollection 2015.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Fudenine, a C-terminal truncated rat homologue of mouse prominin, is blood glucose-regulated and can up-regulate the expression of GAPDH. Zhu G, etal., Biochem Biophys Res Commun 2001 Mar 9;281(4):951-6.
Additional References at PubMed
PMID:8889548   PMID:9356465   PMID:10587575   PMID:11467842   PMID:12042327   PMID:12477932   PMID:12832703   PMID:15316084   PMID:15976444   PMID:16502470   PMID:16809613   PMID:16885410  
PMID:16892058   PMID:17109118   PMID:17118341   PMID:17187413   PMID:17283184   PMID:17498271   PMID:17922643   PMID:18577527   PMID:18654668   PMID:19056867   PMID:19092120   PMID:19190083  
PMID:19199708   PMID:19228982   PMID:19384922   PMID:21082674   PMID:21162801   PMID:23376485   PMID:23533145   PMID:24556617   PMID:27166505   PMID:29076766   PMID:31759629   PMID:38365731  


Genomics

Comparative Map Data
Prom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,202,303 - 71,307,008 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1471,202,336 - 71,307,002 (+)EnsemblGRCr8
mRatBN7.21466,989,545 - 67,094,534 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1471,398,422 - 71,501,438 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,670,309 - 72,774,669 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,108,846 - 69,211,863 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,532,321 - 71,637,400 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,533,063 - 71,637,417 (+)Ensemblrn6Rnor6.0
Rnor_5.01471,573,130 - 71,668,097 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41472,122,986 - 72,230,453 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1465,949,815 - 66,052,606 (+)NCBICelera
RGSC_v3.11472,125,409 - 72,232,843 (+)NCBI
Cytogenetic Map14q21NCBI
PROM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,968,228 - 16,084,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,963,076 - 16,084,378 (-)Ensemblhg38GRCh38
GRCh37415,969,851 - 16,085,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,578,955 - 15,686,664 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34415,646,125 - 15,753,835NCBI
Celera416,434,397 - 16,550,164 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,319,438 - 15,435,190 (-)NCBIHuRef
CHM1_1415,967,639 - 16,083,574 (-)NCBICHM1_1
T2T-CHM13v2.0415,949,919 - 16,107,700 (-)NCBIT2T-CHM13v2.0
Prom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,150,963 - 44,260,850 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl544,150,962 - 44,259,374 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38543,993,621 - 44,102,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,993,620 - 44,102,032 (-)Ensemblmm10GRCm38
MGSCv37544,384,861 - 44,492,975 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36544,281,870 - 44,389,929 (-)NCBIMGSCv36mm8
Celera541,422,565 - 41,530,564 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.97NCBI
Prom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)Ensembl
ChiLan1.0NW_0049554807,955,501 - 8,059,537 (+)NCBIChiLan1.0ChiLan1.0
PROM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2316,246,553 - 16,390,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,444,172 - 16,587,747 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,405,299 - 10,519,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1415,702,155 - 15,816,070 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,702,159 - 15,815,454 (-)EnsemblpanPan2panpan1.1
PROM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,229,487 - 64,362,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,260,685 - 64,382,009 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha366,778,870 - 66,880,110 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0364,707,547 - 64,840,616 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl364,732,612 - 64,855,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,228,808 - 64,330,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,432,846 - 64,534,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,793,321 - 64,894,543 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Prom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,176,590 - 58,315,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647711,878,012 - 12,018,177 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647711,878,261 - 12,017,228 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,215,663 - 11,317,312 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1811,215,659 - 11,331,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,866,626 - 10,987,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,093,699 - 34,243,630 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2734,129,532 - 34,243,778 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604780,860,464 - 80,977,347 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475515,771,286 - 15,886,348 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475515,765,162 - 15,886,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Prom1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11161,683,282 - 61,775,952 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Prom1
651 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:132
Interacting mature miRNAs:163
Transcripts:ENSRNOT00000004231
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH144231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21467,094,216 - 67,094,488 (+)MAPPERmRatBN7.2
Rnor_6.01471,637,083 - 71,637,354NCBIRnor6.0
Rnor_5.01471,667,781 - 71,668,052UniSTSRnor5.0
RGSC_v3.41472,230,137 - 72,230,408UniSTSRGSC3.4
Celera1466,052,290 - 66,052,561UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 88 59 6 352 188 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF263368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF386758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY262731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC126091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI286840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB780214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ871262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EV765242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000004231   ⟹   ENSRNOP00000004231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,650 - 71,307,002 (+)Ensembl
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)Ensembl
Rnor_6.0 Ensembl1471,533,063 - 71,637,393 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082592   ⟹   ENSRNOP00000071297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,336 - 71,307,002 (+)Ensembl
mRatBN7.2 Ensembl1466,999,156 - 67,094,527 (+)Ensembl
Rnor_6.0 Ensembl1471,542,057 - 71,637,393 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083701   ⟹   ENSRNOP00000069832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,867 - 71,306,998 (+)Ensembl
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)Ensembl
Rnor_6.0 Ensembl1471,542,059 - 71,637,417 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084274   ⟹   ENSRNOP00000071743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,203,042 - 71,238,329 (+)Ensembl
mRatBN7.2 Ensembl1466,990,557 - 67,025,848 (+)Ensembl
Rnor_6.0 Ensembl1471,533,460 - 71,568,622 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084322   ⟹   ENSRNOP00000068615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,867 - 71,305,577 (+)Ensembl
mRatBN7.2 Ensembl1466,990,160 - 67,086,876 (+)Ensembl
Rnor_6.0 Ensembl1471,542,208 - 71,631,487 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113497   ⟹   ENSRNOP00000080859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,867 - 71,306,998 (+)Ensembl
mRatBN7.2 Ensembl1466,990,160 - 67,087,704 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118243   ⟹   ENSRNOP00000097023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,867 - 71,299,592 (+)Ensembl
mRatBN7.2 Ensembl1466,990,160 - 67,086,876 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163101   ⟹   ENSRNOP00000110983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,202,764 - 71,307,002 (+)Ensembl
RefSeq Acc Id: NM_001110137   ⟹   NP_001103607
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,211,639 - 71,307,008 (+)NCBI
mRatBN7.21466,999,156 - 67,094,533 (+)NCBI
Rnor_6.01471,542,057 - 71,637,399 (+)NCBI
Rnor_5.01471,573,130 - 71,668,097 (+)NCBI
RGSC_v3.41472,122,986 - 72,230,453 (+)RGD
Celera1465,958,787 - 66,052,606 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021751   ⟹   NP_068519
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,645 - 71,307,008 (+)NCBI
mRatBN7.21466,990,160 - 67,094,533 (+)NCBI
Rnor_6.01471,533,063 - 71,637,399 (+)NCBI
Rnor_5.01471,573,130 - 71,668,097 (+)NCBI
RGSC_v3.41472,122,986 - 72,230,453 (+)RGD
Celera1465,949,815 - 66,052,606 (+)RGD
Sequence:
RefSeq Acc Id: XM_008770211   ⟹   XP_008768433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
mRatBN7.21466,990,070 - 67,094,534 (+)NCBI
Rnor_6.01471,532,881 - 71,637,400 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092361   ⟹   XP_038948289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,203,002 - 71,307,008 (+)NCBI
mRatBN7.21466,990,285 - 67,094,534 (+)NCBI
RefSeq Acc Id: XM_039092362   ⟹   XP_038948290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,303 - 71,307,008 (+)NCBI
mRatBN7.21466,989,545 - 67,094,534 (+)NCBI
RefSeq Acc Id: XM_039092364   ⟹   XP_038948292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,998 - 71,307,008 (+)NCBI
mRatBN7.21466,990,286 - 67,094,024 (+)NCBI
RefSeq Acc Id: XM_039092365   ⟹   XP_038948293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
mRatBN7.21466,999,307 - 67,094,534 (+)NCBI
RefSeq Acc Id: XM_063273535   ⟹   XP_063129605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273536   ⟹   XP_063129606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,304 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273537   ⟹   XP_063129607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273538   ⟹   XP_063129608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273539   ⟹   XP_063129609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,573 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273540   ⟹   XP_063129610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,203,002 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273541   ⟹   XP_063129611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,304 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273542   ⟹   XP_063129612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273543   ⟹   XP_063129613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,998 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273544   ⟹   XP_063129614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,573 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273545   ⟹   XP_063129615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,998 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273546   ⟹   XP_063129616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,203,002 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273547   ⟹   XP_063129617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,573 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273548   ⟹   XP_063129618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,998 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273549   ⟹   XP_063129619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,304 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273550   ⟹   XP_063129620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,571 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273551   ⟹   XP_063129621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273552   ⟹   XP_063129622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,572 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273553   ⟹   XP_063129623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,998 - 71,307,008 (+)NCBI
RefSeq Acc Id: XM_063273554   ⟹   XP_063129624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,202,303 - 71,307,008 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001103607 (Get FASTA)   NCBI Sequence Viewer  
  NP_068519 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768433 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948289 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948290 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948292 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948293 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129605 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129611 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129621 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129623 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129624 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF73049 (Get FASTA)   NCBI Sequence Viewer  
  AAI26092 (Get FASTA)   NCBI Sequence Viewer  
  AAK82364 (Get FASTA)   NCBI Sequence Viewer  
  AAP41835 (Get FASTA)   NCBI Sequence Viewer  
  ABI50089 (Get FASTA)   NCBI Sequence Viewer  
  ABI50090 (Get FASTA)   NCBI Sequence Viewer  
  EDL99943 (Get FASTA)   NCBI Sequence Viewer  
  EDL99944 (Get FASTA)   NCBI Sequence Viewer  
  EDL99945 (Get FASTA)   NCBI Sequence Viewer  
  EDL99946 (Get FASTA)   NCBI Sequence Viewer  
  EDL99947 (Get FASTA)   NCBI Sequence Viewer  
  EDL99948 (Get FASTA)   NCBI Sequence Viewer  
  EDL99949 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004231
  ENSRNOP00000004231.8
  ENSRNOP00000068615
  ENSRNOP00000068615.3
  ENSRNOP00000069832
  ENSRNOP00000069832.1
  ENSRNOP00000071297
  ENSRNOP00000071297.2
  ENSRNOP00000071743.1
  ENSRNOP00000080859
  ENSRNOP00000080859.2
  ENSRNOP00000097023
  ENSRNOP00000097023.1
  ENSRNOP00000110983
  ENSRNOP00000110983.1
RefSeq Acc Id: NP_068519   ⟸   NM_021751
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL),   F7FI74 (UniProtKB/TrEMBL),   Q91XN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103607   ⟸   NM_001110137
- Peptide Label: isoform 2 precursor
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768433   ⟸   XM_008770211
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWD0 (UniProtKB/TrEMBL),   A0A8I5ZQT1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004231   ⟸   ENSRNOT00000004231
Ensembl Acc Id: ENSRNOP00000071297   ⟸   ENSRNOT00000082592
Ensembl Acc Id: ENSRNOP00000069832   ⟸   ENSRNOT00000083701
Ensembl Acc Id: ENSRNOP00000071743   ⟸   ENSRNOT00000084274
Ensembl Acc Id: ENSRNOP00000068615   ⟸   ENSRNOT00000084322
RefSeq Acc Id: XP_038948290   ⟸   XM_039092362
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWD0 (UniProtKB/TrEMBL),   A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948289   ⟸   XM_039092361
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWD0 (UniProtKB/TrEMBL),   A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948292   ⟸   XM_039092364
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL),   F7FI74 (UniProtKB/TrEMBL),   Q91XN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948293   ⟸   XM_039092365
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080859   ⟸   ENSRNOT00000113497
Ensembl Acc Id: ENSRNOP00000097023   ⟸   ENSRNOT00000118243
RefSeq Acc Id: XP_063129624   ⟸   XM_063273554
- Peptide Label: isoform X14
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129606   ⟸   XM_063273536
- Peptide Label: isoform X3
- UniProtKB: F7FI74 (UniProtKB/TrEMBL),   Q91XN5 (UniProtKB/TrEMBL),   A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129619   ⟸   XM_063273549
- Peptide Label: isoform X11
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129611   ⟸   XM_063273541
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129620   ⟸   XM_063273550
- Peptide Label: isoform X12
- UniProtKB: A0A0G2K044 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129608   ⟸   XM_063273538
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K044 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129605   ⟸   XM_063273535
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129612   ⟸   XM_063273542
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K044 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129607   ⟸   XM_063273537
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129621   ⟸   XM_063273551
- Peptide Label: isoform X13
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129622   ⟸   XM_063273552
- Peptide Label: isoform X14
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129614   ⟸   XM_063273544
- Peptide Label: isoform X9
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129617   ⟸   XM_063273547
- Peptide Label: isoform X11
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129609   ⟸   XM_063273539
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129613   ⟸   XM_063273543
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K044 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129615   ⟸   XM_063273545
- Peptide Label: isoform X9
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129618   ⟸   XM_063273548
- Peptide Label: isoform X11
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129623   ⟸   XM_063273553
- Peptide Label: isoform X14
- UniProtKB: Q7TSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129610   ⟸   XM_063273540
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129616   ⟸   XM_063273546
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZQT1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110983   ⟸   ENSRNOT00000163101

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JWD0-F1-model_v2 AlphaFold A0A0G2JWD0 1-866 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699352
Promoter ID:EPDNEW_R9876
Type:initiation region
Name:Prom1_1
Description:prominin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01471,533,067 - 71,533,127EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69367 AgrOrtholog
BioCyc Gene G2FUF-15516 BioCyc
Ensembl Genes ENSRNOG00000003098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004231 ENTREZGENE
  ENSRNOT00000004231.8 UniProtKB/TrEMBL
  ENSRNOT00000082592 ENTREZGENE
  ENSRNOT00000082592.3 UniProtKB/TrEMBL
  ENSRNOT00000083701 ENTREZGENE
  ENSRNOT00000083701.3 UniProtKB/TrEMBL
  ENSRNOT00000084274.3 UniProtKB/TrEMBL
  ENSRNOT00000084322 ENTREZGENE
  ENSRNOT00000084322.3 UniProtKB/TrEMBL
  ENSRNOT00000113497 ENTREZGENE
  ENSRNOT00000113497.2 UniProtKB/TrEMBL
  ENSRNOT00000118243 ENTREZGENE
  ENSRNOT00000118243.2 UniProtKB/TrEMBL
  ENSRNOT00000163101 ENTREZGENE
  ENSRNOT00000163101.1 UniProtKB/TrEMBL
InterPro Prominin UniProtKB/TrEMBL
KEGG Report rno:60357 UniProtKB/TrEMBL
NCBI Gene Prom1 ENTREZGENE
PANTHER Prominin UniProtKB/TrEMBL
  PROMININ-1 UniProtKB/TrEMBL
Pfam Prominin UniProtKB/TrEMBL
PhenoGen Prom1 PhenoGen
RatGTEx ENSRNOG00000003098 RatGTEx
UniProt A0A0G2JT89_RAT UniProtKB/TrEMBL
  A0A0G2JWD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K044 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQT1 ENTREZGENE
  A0A8I6GLV7_RAT UniProtKB/TrEMBL
  A0ABK0LWU3_RAT UniProtKB/TrEMBL
  A0ABZ3NN44_RAT UniProtKB/TrEMBL
  A0JN22_RAT UniProtKB/TrEMBL
  A6IJN0_RAT UniProtKB/TrEMBL
  A6IJN1_RAT UniProtKB/TrEMBL
  A6IJN4_RAT UniProtKB/TrEMBL
  A6IJN5_RAT UniProtKB/TrEMBL
  F7FI74 ENTREZGENE
  Q09LS9_RAT UniProtKB/TrEMBL
  Q09LT0_RAT UniProtKB/TrEMBL
  Q7TSL4 ENTREZGENE, UniProtKB/TrEMBL
  Q91XN5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8I5ZQT1 UniProtKB/TrEMBL
  F7FI74 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Prom1  prominin 1  Prom  prominin  Symbol and Name updated 1299863 APPROVED
2002-06-10 Prom  prominin      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains four transmembrane segments and two extracellular glycosylated domains 68837