Glg1 (golgi glycoprotein 1) - Rat Genome Database

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Gene: Glg1 (golgi glycoprotein 1) Rattus norvegicus
Analyze
Symbol: Glg1
Name: golgi glycoprotein 1
RGD ID: 69345
Description: Enables fibroblast growth factor binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within several processes, including negative regulation of protein processing; negative regulation of transforming growth factor beta receptor signaling pathway; and regulation of chondrocyte differentiation. Located in Golgi medial cisterna. Orthologous to human GLG1 (golgi glycoprotein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E-selectin ligand 1; ESL-1; Golgi apparatus protein 1; golgi sialoglycoprotein MG-160; MG-160; selectin, endothelial cell, ligand; Selel
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,034,248 - 56,133,538 (-)NCBIGRCr8
mRatBN7.21939,124,892 - 39,224,178 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,124,641 - 39,224,178 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,932,205 - 46,028,570 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,585,555 - 46,681,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,890,998 - 48,982,237 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01942,983,879 - 43,088,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1942,983,869 - 43,090,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01953,811,082 - 53,912,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,082,324 - 41,176,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11941,087,204 - 41,181,840 (-)NCBI
Celera1938,518,712 - 38,613,117 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Glg1RatNeurodevelopmental Disorders  ISOGLG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Glg1Ratparaplegia  ISOGLG1 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegiaClinVarPMID:28492532

1 to 20 of 109 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Glg1Rat1,2-dimethylhydrazine multiple interactionsISOGlg1 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of GLG1 mRNA]CTDPMID:22206623
Glg1Rat1,2-dimethylhydrazine increases expressionISOGlg1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of GLG1 mRNACTDPMID:22206623
Glg1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOGlg1 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:15329391
Glg1Rat17alpha-ethynylestradiol affects expressionISOGlg1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of GLG1 mRNACTDPMID:17555576
Glg1Rat17alpha-ethynylestradiol multiple interactionsISOGlg1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GLG1 mRNACTDPMID:17942748
Glg1Rat17alpha-ethynylestradiol increases expressionISOGlg1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of GLG1 mRNACTDPMID:17942748
Glg1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of GLG1 mRNACTDPMID:32145629
Glg1Rat17beta-estradiol increases expressionISOGlg1 (Mus musculus)6480464Estradiol results in increased expression of GLG1 mRNACTDPMID:39298647
Glg1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOGlg1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GLG1 mRNACTDPMID:17942748
Glg1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of GLG1 mRNACTDPMID:33387578
Glg1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOGlg1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of GLG1 mRNACTDPMID:21570461
Glg1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of GLG1 mRNACTDPMID:22298810
Glg1Rat2,6-dimethoxyphenol multiple interactionsISOGLG1 (Homo sapiens)6480464[Furaldehyde co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of GLG1 proteinCTDPMID:38598786
Glg1Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of GLG1 mRNACTDPMID:21346803
Glg1Rat2-hydroxypropanoic acid decreases expressionISOGLG1 (Homo sapiens)6480464Lactic Acid results in decreased expression of GLG1 mRNACTDPMID:30851411
Glg1Rat4,4'-sulfonyldiphenol decreases expressionISOGlg1 (Mus musculus)6480464bisphenol S results in decreased expression of GLG1 mRNACTDPMID:39298647
Glg1Rat4,4'-sulfonyldiphenol increases expressionISOGLG1 (Homo sapiens)6480464bisphenol S results in increased expression of GLG1 proteinCTDPMID:34186270
Glg1Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of GLG1 mRNACTDPMID:30047161
Glg1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of GLG1 mRNACTDPMID:36843608
Glg1Ratacetazolamide increases expressionISOGlg1 (Mus musculus)6480464Acetazolamide results in increased expression of GLG1 mRNACTDPMID:19274763

1 to 20 of 109 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Glg1Ratbone morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Ratbone morphogenesis acts_upstream_of_or_withinISOGlg1 (Mus musculus)1624291MGI:4829764 PMID:20530870RGDPMID:20530870
Glg1Ratintracellular protein transport  NAS 68884 RGD 
Glg1Ratnegative regulation of protein processing acts_upstream_of_or_withinIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Ratnegative regulation of protein processing acts_upstream_of_or_withinISOGlg1 (Mus musculus)1624291MGI:4829764 more ...RGDPMID:20530870
Glg1Ratnegative regulation of transforming growth factor beta receptor signaling pathway acts_upstream_of_or_withinIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Ratnegative regulation of transforming growth factor beta receptor signaling pathway acts_upstream_of_or_withinISOGlg1 (Mus musculus)1624291MGI:4829764 PMID:20530870RGDPMID:20530870
Glg1Ratprotein processing acts_upstream_ofIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Ratprotein processing acts_upstream_ofISOGlg1 (Mus musculus)1624291MGI:4829764 more ...RGDPMID:20530870
Glg1Ratregulation of chondrocyte differentiation acts_upstream_of_or_withinIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Ratregulation of chondrocyte differentiation acts_upstream_of_or_withinISOGlg1 (Mus musculus)1624291MGI:4829764 PMID:20530870RGDPMID:20530870
Glg1Rattransforming growth factor beta receptor signaling pathway acts_upstream_ofIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Rattransforming growth factor beta receptor signaling pathway acts_upstream_ofISOGlg1 (Mus musculus)1624291MGI:4829764 PMID:20530870RGDPMID:20530870
1 to 13 of 13 rows

Cellular Component
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Glg1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Glg1Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Glg1Ratextracellular matrix located_inIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1Ratextracellular matrix located_inISOGlg1 (Mus musculus)1624291 PMID:20530870RGDPMID:20530870
Glg1RatGolgi apparatus located_inISOGLG1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Glg1RatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
Glg1RatGolgi apparatus located_inIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1RatGolgi apparatus located_inISOGlg1 (Mus musculus)1624291 PMID:20530870RGDPMID:20530870
Glg1RatGolgi medial cisterna  IDA 68884 RGD 
Glg1RatGolgi membrane located_inIEAUniProtKB:Q61543 and ensembl:ENSMUSP000001313551600115GO_REF:0000107EnsemblGO_REF:0000107
Glg1RatGolgi membrane located_inIEAInterPro:IPR0178731600115GO_REF:0000002InterProGO_REF:0000002
Glg1RatGolgi membrane located_inISOGlg1 (Mus musculus)1624291 PMID:9034150RGDPMID:9034150
Glg1RatGolgi membrane is_active_inIBAFB:FBgn0264561 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Glg1RatGolgi membrane located_inIEAUniProtKB-SubCell:SL-01341600115GO_REF:0000044UniProtGO_REF:0000044
Glg1Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Glg1Ratmembrane located_inIEAInterPro:IPR0018931600115GO_REF:0000002InterProGO_REF:0000002
Glg1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Glg1Ratmicrotubule organizing center located_inIEAUniProtKB-SubCell:SL-04841600115GO_REF:0000044UniProtGO_REF:0000044
1 to 18 of 18 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Glg1Ratfibroblast growth factor binding  IDA 68884 RGD 
Glg1Ratfibroblast growth factor binding enablesIBAPANTHER:PTN000223213 and Glg1 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. MG-160, a membrane sialoglycoprotein of the medial cisternae of the rat Golgi apparatus, binds basic fibroblast growth factor and exhibits a high level of sequence identity to a chicken fibroblast growth factor receptor. Gonatas JO, etal., J Cell Sci 1995 Feb;108 ( Pt 2):457-67.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
PMID:2909545   PMID:9034150   PMID:19056867   PMID:19148508   PMID:19946888   PMID:20530870   PMID:23376485   PMID:23533145   PMID:25002582  



Glg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,034,248 - 56,133,538 (-)NCBIGRCr8
mRatBN7.21939,124,892 - 39,224,178 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,124,641 - 39,224,178 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,932,205 - 46,028,570 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,585,555 - 46,681,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,890,998 - 48,982,237 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01942,983,879 - 43,088,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1942,983,869 - 43,090,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01953,811,082 - 53,912,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,082,324 - 41,176,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11941,087,204 - 41,181,840 (-)NCBI
Celera1938,518,712 - 38,613,117 (-)NCBICelera
Cytogenetic Map19q12NCBI
GLG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381674,447,440 - 74,607,114 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1674,447,427 - 74,607,144 (-)EnsemblGRCh38hg38GRCh38
GRCh371674,481,338 - 74,641,012 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,043,357 - 73,198,518 (-)NCBINCBI36Build 36hg18NCBI36
Build 341673,043,356 - 73,198,518NCBI
Celera1658,779,229 - 58,934,111 (-)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1660,230,839 - 60,390,962 (-)NCBIHuRef
CHM1_11675,893,398 - 76,052,995 (-)NCBICHM1_1
T2T-CHM13v2.01680,494,088 - 80,653,847 (-)NCBIT2T-CHM13v2.0
Glg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,879,916 - 111,985,842 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,881,053 - 111,985,848 (-)EnsemblGRCm39 Ensembl
GRCm388111,153,284 - 111,259,210 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,154,421 - 111,259,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,681,448 - 113,783,102 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,044,221 - 114,145,875 (-)NCBIMGSCv36mm8
Celera8115,381,836 - 115,484,398 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.98NCBI
Glg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,870,872 - 2,983,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,871,390 - 2,987,913 (+)NCBIChiLan1.0ChiLan1.0
GLG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21884,163,363 - 84,321,361 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11690,084,068 - 90,243,414 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01655,014,892 - 55,172,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11674,368,055 - 74,526,808 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1674,372,660 - 74,526,764 (-)Ensemblpanpan1.1panPan2
GLG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,020,743 - 76,171,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,020,084 - 76,167,007 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,996,375 - 76,144,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,457,154 - 76,605,266 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,377,525 - 76,603,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,280,084 - 76,427,828 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,103,055 - 76,251,127 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,595,259 - 76,743,197 (+)NCBIUU_Cfam_GSD_1.0
Glg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,054,412 - 36,177,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,411,188 - 23,534,724 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,411,194 - 23,534,692 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,011,837 - 13,165,496 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,011,829 - 13,165,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,976,352 - 13,131,115 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,109,745 - 53,263,878 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,187,919 - 53,268,693 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604715,971,875 - 16,049,084 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,261,589 - 12,424,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474612,261,577 - 12,401,671 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Glg1
489 total Variants

Predicted Target Of
Summary Value
Count of predictions:515
Count of miRNA genes:263
Interacting mature miRNAs:307
Transcripts:ENSRNOT00000025570
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat

1 to 10 of 18 rows
X84037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,129,237 - 39,129,380 (-)MAPPERmRatBN7.2
Rnor_6.01943,086,417 - 43,086,559NCBIRnor6.0
Rnor_5.01953,911,314 - 53,911,456UniSTSRnor5.0
RGSC_v3.41941,083,839 - 41,083,981UniSTSRGSC3.4
Celera1938,520,227 - 38,520,369UniSTS
Cytogenetic Map19q12UniSTS
RH138754  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,128,397 - 39,128,517 (-)MAPPERmRatBN7.2
Rnor_6.01943,087,280 - 43,087,399NCBIRnor6.0
Rnor_5.01953,912,177 - 53,912,296UniSTSRnor5.0
RGSC_v3.41941,082,999 - 41,083,118UniSTSRGSC3.4
Celera1938,519,387 - 38,519,506UniSTS
RH 3.4 Map19481.8UniSTS
Cytogenetic Map19q12UniSTS
X84037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,129,253 - 39,129,348 (-)MAPPERmRatBN7.2
Rnor_6.01943,086,449 - 43,086,543NCBIRnor6.0
Rnor_5.01953,911,346 - 53,911,440UniSTSRnor5.0
RGSC_v3.41941,083,855 - 41,083,949UniSTSRGSC3.4
Celera1938,520,243 - 38,520,337UniSTS
Cytogenetic Map19q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000025570   ⟹   ENSRNOP00000025570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,124,641 - 39,224,178 (-)Ensembl
Rnor_6.0 Ensembl1942,983,869 - 43,090,841 (+)Ensembl
RefSeq Acc Id: NM_017211   ⟹   NP_058907
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81956,037,079 - 56,133,522 (-)NCBI
mRatBN7.21939,127,723 - 39,224,178 (-)NCBI
Rnor_6.01942,983,879 - 43,088,074 (+)NCBI
Rnor_5.01953,811,082 - 53,912,971 (+)NCBI
RGSC_v3.41941,082,324 - 41,176,959 (-)RGD
Celera1938,518,712 - 38,613,117 (-)RGD
Sequence:
RefSeq Acc Id: XM_039097676   ⟹   XP_038953604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81956,034,248 - 56,133,538 (-)NCBI
mRatBN7.21939,124,892 - 39,224,164 (-)NCBI
Protein RefSeqs NP_058907 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953604 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92563 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025570
  ENSRNOP00000102342
GenBank Protein Q62638 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058907   ⟸   NM_017211
- Peptide Label: precursor
- UniProtKB: Q62638 (UniProtKB/Swiss-Prot),   A6IZ85 (UniProtKB/TrEMBL),   G3V8G5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025570   ⟸   ENSRNOT00000025570
RefSeq Acc Id: XP_038953604   ⟸   XM_039097676
- Peptide Label: isoform X1
- UniProtKB: A6IZ85 (UniProtKB/TrEMBL),   G3V8G5 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-Q62638-F1-model_v2 AlphaFold Q62638 1-1171 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701137
Promoter ID:EPDNEW_R11661
Type:multiple initiation site
Name:Glg1_1
Description:golgi glycoprotein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01942,983,879 - 42,983,939EPDNEW


1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-5658 BioCyc
Ensembl Genes ENSRNOG00000018668 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000025570 ENTREZGENE
  ENSRNOT00000166511 ENTREZGENE
InterPro Cys-rich_GLG1_repeat UniProtKB/Swiss-Prot
  Cys-rich_GLG1_repeat_euk UniProtKB/Swiss-Prot
  GLG1 UniProtKB/Swiss-Prot
KEGG Report rno:29476 UniProtKB/Swiss-Prot
NCBI Gene 29476 ENTREZGENE
PANTHER GOLGI APPARATUS PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR11884 UniProtKB/Swiss-Prot
Pfam Cys_rich_FGFR UniProtKB/Swiss-Prot
PhenoGen Glg1 PhenoGen
PROSITE GLG1_C_RICH UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018668 RatGTEx
TIGR TC216680
UniProt A6IZ85 ENTREZGENE, UniProtKB/TrEMBL
  G3V8G5 ENTREZGENE, UniProtKB/TrEMBL
  GSLG1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Glg1  golgi glycoprotein 1  Glg1  golgi apparatus protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Glg1  golgi apparatus protein 1  Selel  selectin, endothelial cell, ligand  Symbol and Name updated 1299863 APPROVED
2002-06-10 Selel  selectin, endothelial cell, ligand      Name updated 70584 APPROVED
2002-02-20 Edg5  endothelial differentiation, sphingolipid G-protein-coupled receptor, 5      Symbol and Name updated to reflect Human and Mouse nomenclature 70282 APPROVED
2002-02-20 Selel  selectin, endothelial cell, ligand      Please ignor the previous Nomenclature event it was a data entry mistake. Selel has NEVER been associated with Edg5 70282 APPROVED

Note Type Note Reference
gene_cellular_localization localized to the medial cisternae of the Golgi apparatus 68884
gene_protein 1,171 amino acids with an M(r) of 133,403 68884