Tagln3 (transgelin 3) - Rat Genome Database

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Gene: Tagln3 (transgelin 3) Rattus norvegicus
Analyze
Symbol: Tagln3
Name: transgelin 3
RGD ID: 69301
Description: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in actin cytoskeleton and synapse. Orthologous to human TAGLN3 (transgelin 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103693564; neuronal protein 22; neuronal protein Np25; Np22; Np25; transgelin-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,562,482 - 68,576,058 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1168,562,338 - 68,576,051 (+)EnsemblGRCr8
mRatBN7.21155,099,887 - 55,113,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,099,743 - 55,113,485 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1163,874,826 - 63,888,393 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01156,536,706 - 56,550,273 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01155,642,796 - 55,656,336 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,072,983 - 60,086,552 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,072,727 - 60,086,553 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1157,505,005 - 57,518,933 (+)Ensemblrn6Rnor6.0
Rnor_5.01160,668,085 - 60,681,692 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41156,587,304 - 56,600,874 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1154,624,418 - 54,637,992 (+)NCBICelera
RGSC_v3.11156,645,293 - 56,658,463 (+)NCBI
Cytogenetic Map11q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IBA)
nucleus  (IEA,ISO)
synapse  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning and characterization of hNP22: a gene up-regulated in human alcoholic brain. Fan L, etal., J Neurochem 2001 Mar;76(5):1275-81.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. The identification of NP25: a novel protein that is differentially expressed by neuronal subpopulations. Ren WZ, etal., Brain Res Mol Brain Res 1994 Mar;22(1-4):173-85.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:16542643   PMID:17634366   PMID:18480465   PMID:31904090  


Genomics

Comparative Map Data
Tagln3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,562,482 - 68,576,058 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1168,562,338 - 68,576,051 (+)EnsemblGRCr8
mRatBN7.21155,099,887 - 55,113,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,099,743 - 55,113,485 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1163,874,826 - 63,888,393 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01156,536,706 - 56,550,273 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01155,642,796 - 55,656,336 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,072,983 - 60,086,552 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,072,727 - 60,086,553 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1157,505,005 - 57,518,933 (+)Ensemblrn6Rnor6.0
Rnor_5.01160,668,085 - 60,681,692 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41156,587,304 - 56,600,874 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1154,624,418 - 54,637,992 (+)NCBICelera
RGSC_v3.11156,645,293 - 56,658,463 (+)NCBI
Cytogenetic Map11q21NCBI
TAGLN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383111,998,922 - 112,013,885 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3111,998,739 - 112,013,888 (+)Ensemblhg38GRCh38
GRCh373111,717,769 - 111,732,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363113,200,276 - 113,215,425 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343113,200,275 - 113,215,424NCBI
Celera3110,116,666 - 110,131,815 (+)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3109,092,929 - 109,108,077 (+)NCBIHuRef
CHM1_13111,681,627 - 111,696,769 (+)NCBICHM1_1
T2T-CHM13v2.03114,720,030 - 114,734,995 (+)NCBIT2T-CHM13v2.0
Tagln3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391645,531,591 - 45,545,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1645,531,593 - 45,544,971 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381645,711,230 - 45,724,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1645,711,230 - 45,724,608 (-)Ensemblmm10GRCm38
MGSCv371645,711,343 - 45,724,644 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361645,630,562 - 45,643,863 (-)NCBIMGSCv36mm8
Celera1646,088,034 - 46,101,263 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1629.99NCBI
Tagln3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542712,412,378 - 12,426,463 (+)Ensembl
ChiLan1.0NW_00495542712,412,959 - 12,426,400 (+)NCBIChiLan1.0ChiLan1.0
TAGLN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22109,998,587 - 110,013,763 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13110,003,367 - 110,018,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03109,143,253 - 109,158,367 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13116,067,138 - 116,082,304 (+)NCBIPanPan1.1PanPan1.1panPan2
TAGLN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13316,638,371 - 16,652,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3316,638,362 - 16,652,423 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3316,740,287 - 16,754,046 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03316,876,375 - 16,890,186 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3316,876,360 - 16,890,183 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13316,686,506 - 16,700,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03316,732,143 - 16,745,953 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03317,277,135 - 17,290,982 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tagln3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602137,757,248 - 137,771,202 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936834812,676 - 826,759 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936834812,681 - 826,759 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAGLN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13147,740,917 - 147,754,848 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113147,740,913 - 147,754,845 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213157,488,973 - 157,500,986 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAGLN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12268,783,315 - 68,797,900 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2268,783,116 - 68,797,946 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604197,676,051 - 97,691,436 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tagln3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473136,559,383 - 36,574,932 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473136,560,502 - 36,575,129 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tagln3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1430,433,746 - 30,447,472 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tagln3
54 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000002942
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH138179  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21155,107,631 - 55,107,795 (+)MAPPERmRatBN7.2
Rnor_6.01157,513,063 - 57,513,226NCBIRnor6.0
Rnor_6.01160,080,728 - 60,080,891NCBIRnor6.0
Rnor_5.01160,675,831 - 60,675,994UniSTSRnor5.0
RGSC_v3.41156,595,050 - 56,595,213UniSTSRGSC3.4
Celera1154,632,164 - 54,632,327UniSTS
Cytogenetic Map11q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 1 35 146 4 8 2 8 2 88 55 10 136 21 42 6 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001035236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF459788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB795348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M84725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002942   ⟹   ENSRNOP00000002942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,099,762 - 55,113,485 (+)Ensembl
Rnor_6.0 Ensembl1157,505,005 - 57,518,933 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087508   ⟹   ENSRNOP00000073828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1160,073,383 - 60,086,552 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090230   ⟹   ENSRNOP00000072985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1168,562,338 - 68,576,051 (+)Ensembl
mRatBN7.2 Ensembl1155,099,743 - 55,113,456 (+)Ensembl
Rnor_6.0 Ensembl1160,072,727 - 60,086,553 (+)Ensembl
RefSeq Acc Id: NM_001035236   ⟹   NP_001030313
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,562,482 - 68,576,051 (+)NCBI
mRatBN7.21155,099,887 - 55,113,456 (+)NCBI
Rnor_6.01160,072,983 - 60,086,552 (+)NCBI
Rnor_5.01160,668,085 - 60,681,692 (+)NCBI
RGSC_v3.41156,587,304 - 56,600,874 (+)RGD
Celera1154,624,418 - 54,637,992 (+)RGD
Sequence:
RefSeq Acc Id: NM_031676   ⟹   NP_113864
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,562,848 - 68,576,051 (+)NCBI
mRatBN7.21155,100,253 - 55,113,456 (+)NCBI
Rnor_6.01160,073,349 - 60,086,552 (+)NCBI
Rnor_5.01160,668,085 - 60,681,692 (+)NCBI
RGSC_v3.41156,587,304 - 56,600,874 (+)RGD
Celera1154,624,785 - 54,637,992 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088609   ⟹   XP_038944537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,563,824 - 68,576,058 (+)NCBI
mRatBN7.21155,101,225 - 55,113,457 (+)NCBI
RefSeq Acc Id: XM_039088610   ⟹   XP_038944538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,563,727 - 68,576,058 (+)NCBI
mRatBN7.21155,101,144 - 55,113,457 (+)NCBI
RefSeq Acc Id: NP_001030313   ⟸   NM_001035236
- UniProtKB: Q09025 (UniProtKB/Swiss-Prot),   Q8VHH3 (UniProtKB/Swiss-Prot),   P37805 (UniProtKB/Swiss-Prot),   A6IQX9 (UniProtKB/TrEMBL),   A0A8L2UHL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_113864   ⟸   NM_031676
- UniProtKB: Q09025 (UniProtKB/Swiss-Prot),   Q8VHH3 (UniProtKB/Swiss-Prot),   P37805 (UniProtKB/Swiss-Prot),   A6IQX9 (UniProtKB/TrEMBL),   A0A8L2UHL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072985   ⟸   ENSRNOT00000090230
Ensembl Acc Id: ENSRNOP00000073828   ⟸   ENSRNOT00000087508
RefSeq Acc Id: XP_038944538   ⟸   XM_039088610
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944537   ⟸   XM_039088609
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000002942   ⟸   ENSRNOT00000002942
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P37805-F1-model_v2 AlphaFold P37805 1-199 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698133
Promoter ID:EPDNEW_R8656
Type:initiation region
Name:Tagln3_1
Description:transgelin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01160,073,352 - 60,073,412EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69301 AgrOrtholog
BioCyc Gene G2FUF-21385 BioCyc
Ensembl Genes ENSRNOG00000002151 Ensembl
  ENSRNOG00000059539 Ensembl
  ENSRNOG00000064186 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000090230 ENTREZGENE
  ENSRNOT00000090230.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
InterPro Calponin-like UniProtKB/Swiss-Prot
  Calponin_repeat UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  SM22_calponin UniProtKB/Swiss-Prot
KEGG Report rno:63837 UniProtKB/Swiss-Prot
NCBI Gene 63837 ENTREZGENE
PANTHER CALPONIN UniProtKB/Swiss-Prot
  TRANSGELIN-3 UniProtKB/Swiss-Prot
Pfam Calponin UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PhenoGen Tagln3 PhenoGen
PRINTS SM22CALPONIN UniProtKB/Swiss-Prot
  TRANSGELIN UniProtKB/Swiss-Prot
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot
  CALPONIN_2 UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002151 RatGTEx
  ENSRNOG00000059539 RatGTEx
  ENSRNOG00000064186 RatGTEx
SMART SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot
TIGR TC205680
UniProt A0A8L2UHL4 ENTREZGENE
  A6IQX7_RAT UniProtKB/TrEMBL
  A6IQX9 ENTREZGENE, UniProtKB/TrEMBL
  P37805 ENTREZGENE
  Q09025 ENTREZGENE
  Q8VHH3 ENTREZGENE
  TAGL3_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q09025 UniProtKB/Swiss-Prot
  Q8VHH3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tagln3  transgelin 3  LOC103693564  transgelin-3  Data merged from RGD:9117793 737654 PROVISIONAL
2014-08-25 LOC103693564  transgelin-3      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Tagln3  transgelin 3      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference