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Gene: Cdh8 (cadherin 8) Rattus norvegicus

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Symbol:

Cdh8

Name:

cadherin 8

RGD ID:

69286

Description:

Predicted to enable beta-catenin binding activity; cadherin binding activity; and identical protein binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion; cell-cell adhesion mediated by cadherin; and cell-cell junction organization. Predicted to act upstream of or within glutamatergic synaptic transmission and response to cold. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in several cellular components, including adherens junction; glutamatergic synapse; and synaptic cleft. Orthologous to human CDH8 (cadherin 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cadherin-8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH8 (cadherin 8)	HGNC	HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Cdh8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDH8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdh8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cdh8 (cadherin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KLF5 (KLF transcription factor 5)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CDH8 (cadherin 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdh8 (cadherin 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdh8 (cadherin 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdh8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	shg	Alliance	DIOPT (Ensembl Compara\|InParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	5,494,552 - 5,901,950 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	5,500,221 - 5,902,627 (+)	Ensembl				GRCr8
mRatBN7.2	19	5,494,038 - 5,901,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	5,494,174 - 5,895,669 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	5,486,329 - 5,877,628 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	6,253,098 - 6,644,438 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	5,519,517 - 5,915,032 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	5,507,955 - 5,903,484 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	9,315,922 - 9,711,458 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	9,808,777 - 10,204,321 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	5,361,551 - 5,757,069 (+)	NCBI		F344_StmMcwi
Rnor_6.0	19	6,031,654 - 6,431,502 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	6,046,665 - 6,426,216 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	6,024,414 - 6,424,501 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	5,685,862 - 6,014,208 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	5,459,507 - 5,851,781 (+)	NCBI		Celera
RGSC_v3.1	19	5,690,687 - 6,019,033 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

clothianidin (ISO)

copper(II) sulfate (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

dibutyl phthalate (EXP)

dimethylarsinic acid (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

fonofos (ISO)

fulvestrant (ISO)

L-methionine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nickel sulfate (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paraquat (ISO)

parathion (ISO)

PCB138 (ISO)

phenylmercury acetate (ISO)

Ptaquiloside (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

terbufos (ISO)

testosterone (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IBA)

calcium-dependent cell-cell adhesion (IBA)

cell adhesion (IEA)

cell migration (IBA)

cell morphogenesis (IBA)

cell-cell adhesion (IEA,NAS)

cell-cell adhesion mediated by cadherin (IBA)

cell-cell junction assembly (IBA)

chemical synaptic transmission (ISO)

homophilic cell-cell adhesion (IEA)

regulation of synapse organization (IEA,ISO)

response to cold (ISO)

spermatogenesis (NAS)

synaptic transmission, glutamatergic (ISO)

Cellular Component

adherens junction (IBA)

axon terminus (IBA,IEA,ISO)

catenin complex (IBA)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

plasma membrane (IEA)

synaptic cleft (IBA,IEA,ISO)

synaptic membrane (IEA,ISO)

Molecular Function

beta-catenin binding (IBA)

cadherin binding (IBA)

calcium ion binding (IEA)

identical protein binding (IEA,ISO)

metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Multiple cadherin superfamily members with unique expression profiles are produced in rat testis.	Johnson KJ, etal., Endocrinology 2000 Feb;141(2):675-83.
4.	Molecular properties and chromosomal location of cadherin-8.	Kido M, etal., Genomics 1998 Mar 1;48(2):186-94.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17392463	PMID:18064706	PMID:18682221	PMID:20848607	PMID:25126785	PMID:25158904

Genomics

Comparative Map Data

Cdh8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	5,494,552 - 5,901,950 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	5,500,221 - 5,902,627 (+)	Ensembl				GRCr8
mRatBN7.2	19	5,494,038 - 5,901,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	5,494,174 - 5,895,669 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	5,486,329 - 5,877,628 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	6,253,098 - 6,644,438 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	5,519,517 - 5,915,032 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	5,507,955 - 5,903,484 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	9,315,922 - 9,711,458 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	9,808,777 - 10,204,321 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	5,361,551 - 5,757,069 (+)	NCBI		F344_StmMcwi
Rnor_6.0	19	6,031,654 - 6,431,502 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	6,046,665 - 6,426,216 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	6,024,414 - 6,424,501 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	5,685,862 - 6,014,208 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	5,459,507 - 5,851,781 (+)	NCBI		Celera
RGSC_v3.1	19	5,690,687 - 6,019,033 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

CDH8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	61,647,250 - 62,036,438 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	61,647,242 - 62,037,035 (-)	Ensembl			hg38	GRCh38
GRCh37	16	61,681,154 - 62,070,342 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	60,244,736 - 60,627,537 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	60,244,735 - 60,627,537	NCBI
Celera	16	46,191,618 - 46,573,463 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	47,554,742 - 47,940,223 (-)	NCBI		HuRef
CHM1_1	16	63,092,871 - 63,477,579 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	67,428,496 - 67,824,205 (-)	NCBI		T2T-CHM13v2.0

Cdh8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	99,751,103 - 100,144,298 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	99,751,103 - 100,143,103 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	99,024,471 - 99,417,666 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	99,024,471 - 99,416,471 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	101,552,669 - 101,940,357 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	101,917,898 - 102,305,586 (-)	NCBI		MGSCv36	mm8
Celera	8	103,311,393 - 103,701,585 (-)	NCBI		Celera
Cytogenetic Map	8	D1	NCBI
cM Map	8	49.4	NCBI

Cdh8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	18,734,640 - 19,080,140 (-)	Ensembl
ChiLan1.0	NW_004955433	18,737,715 - 19,094,202 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDH8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	71,121,935 - 71,512,249 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	77,032,535 - 77,423,579 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	41,935,706 - 42,326,055 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	61,053,767 - 61,438,175 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	61,054,214 - 61,437,569 (-)	Ensembl			panPan2	panpan1.1

CDH8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	86,402,078 - 86,743,563 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	86,402,570 - 86,743,755 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	86,362,811 - 86,704,824 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	86,964,546 - 87,308,062 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	86,964,544 - 87,309,963 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	86,701,569 - 87,060,354 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	86,393,059 - 86,736,809 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	87,027,257 - 87,369,201 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdh8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	46,467,163 - 46,806,813 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	12,787,173 - 13,015,974 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	12,784,997 - 13,121,912 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	22,923,781 - 23,279,241 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	22,922,965 - 23,644,501 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	21,405,526 - 21,523,536 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	47,450,781 - 47,853,805 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	47,465,277 - 47,853,706 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	28,157,491 - 28,566,127 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	24,348,586 - 24,735,902 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	24,348,163 - 24,733,583 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cdh8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	7,655,726 - 8,041,524 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cdh8
2308 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	92
Count of miRNA genes:	71
Interacting mature miRNAs:	81
Transcripts:	ENSRNOT00000067454
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH141996

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	5,863,486 - 5,863,676 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	6,396,193 - 6,396,382	NCBI	Rnor6.0
Rnor_5.0	19	6,390,815 - 6,391,004	UniSTS	Rnor5.0
RGSC_v3.4	19	5,987,996 - 5,988,185	UniSTS	RGSC3.4
Celera	19	5,825,570 - 5,825,759	UniSTS
RH 3.4 Map	19	0.0	UniSTS
Cytogenetic Map	19	p13	UniSTS

BE119945

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	5,783,208 - 5,783,406 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	6,316,971 - 6,317,168	NCBI	Rnor6.0
Rnor_5.0	19	6,312,018 - 6,312,215	UniSTS	Rnor5.0
RGSC_v3.4	19	5,907,699 - 5,907,896	UniSTS	RGSC3.4
Celera	19	5,745,284 - 5,745,481	UniSTS
RH 3.4 Map	19	0.0	UniSTS
Cytogenetic Map	19	p13	UniSTS

AW530740

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	5,663,850 - 5,664,009 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	6,202,529 - 6,202,687	NCBI	Rnor6.0
Rnor_5.0	19	6,194,762 - 6,194,920	UniSTS	Rnor5.0
Celera	19	5,629,530 - 5,629,688	UniSTS
RH 3.4 Map	19	0.0	UniSTS
Cytogenetic Map	19	p13	UniSTS

CDH8_1919

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	5,889,202 - 5,889,993 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	6,421,900 - 6,422,690	NCBI	Rnor6.0
Rnor_5.0	19	6,416,522 - 6,417,312	UniSTS	Rnor5.0
RGSC_v3.4	19	6,013,707 - 6,014,497	UniSTS	RGSC3.4
Celera	19	5,851,280 - 5,852,070	UniSTS
Cytogenetic Map	19	p13	UniSTS

Expression

RNA-SEQ Expression

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alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	6	39	170	56	51	24	45	24	6	199	109	6	155	46	81	27	28	28

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAHX01096923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01096939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF177679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000084126 ⟹ ENSRNOP00000072182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	5,500,221 - 5,897,501 (+)	Ensembl
mRatBN7.2 Ensembl	19	5,494,174 - 5,890,224 (+)	Ensembl
Rnor_6.0 Ensembl	19	6,046,665 - 6,426,216 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103567 ⟹ ENSRNOP00000093358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	5,494,174 - 5,889,704 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113284 ⟹ ENSRNOP00000078548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	5,500,221 - 5,902,627 (+)	Ensembl
mRatBN7.2 Ensembl	19	5,494,174 - 5,895,669 (+)	Ensembl

RefSeq Acc Id:

NM_053393 ⟹ NP_445845

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,500,466 - 5,895,980 (+)	NCBI
mRatBN7.2	19	5,494,174 - 5,889,704 (+)	NCBI
Dahl_SR_JrHsd	19	5,507,955 - 5,903,484 (+)	NCBI
Lyon_Normotensive	19	9,315,922 - 9,711,458 (+)	NCBI
Lyon_Hypertensive	19	9,808,777 - 10,204,321 (+)	NCBI
F344_StmMcwi	19	5,361,551 - 5,757,069 (+)	NCBI
Rnor_6.0	19	6,031,935 - 6,422,401 (+)	NCBI
Rnor_5.0	19	6,024,414 - 6,424,501 (+)	NCBI
RGSC_v3.4	19	5,685,862 - 6,014,208 (+)	RGD
Celera	19	5,459,507 - 5,851,781 (+)	RGD

Sequence:

show sequence

CGCAAGCCGGGGAGCGCTCGGCCCAGAATTAGTGGATGGATTTGGAATCTCCCTGCCTCCTCCA
AGCTCCGCCACTGCCACTTTAGGCAGAGACCTGAGCGTCAACACGCGAGCCGTACTTTTAGGCT
GCGGACACTGAGCCCAGCGCGCCAGCTTCGCATCTCCGCACCAGGCTCCACAGCTCGGAGAGGC
ATGAACGCGATCCGGAGGAGACTACCCTGCGCGCGGGGATCCGTGGACATTAGCCGCTCTCGGG
AACTGACCCCCAGCTCCTTCAGCCATTTATGAATCCAGAGGCTTGAGATTTTTTTCCGCATCCC
GGAGCCCGACCTGAGAAATTTCAATGAAAAGGAAAGTCAATGGATCGTGGTCTTGGAAAAGCTG
CTTAGACATGTCTGTTTCCCGGCTCTCTGAACCCGTGGCAGAGCTGTAAGTAAGCGCTTCACAG
TGCGTGATGAATTGGATGGCTTCGGACCCGAGGCAAAAAAAATAATTGTCTCATTTTCGTGCTG
ATTTGCTTAACTGGTGGGACCATGCCAGAAAGGCTAGCTGAGACGCTTTTGGACCTCTGGACTC
CATTAATAATATTATGGATTACTCTTCCCTCTTTTGTGTACATGGCTCCGATGAATCAGGCTCA
CGTTTTAACTACTGGATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGAAATGCGGATTTTGAAC
CGCTCCAAAAGAGGTTGGGTTTGGAATCAAATGTTTGTTCTGGAAGAATTTTCTGGACCTGAAC
CGATTCTCGTTGGCCGGTTACACACAGATCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCT
ATCGGGTGATGGAGCCGGCACAATCTTTCAAATAAACGATATAACTGGAGACATCCATGCTATC
AAAAGACTTGACCGAGAGGAAAAGGCTGAGTATACGTTAACAGCTCAGGCAGTGGACTGGGAGA
CAAACAAACCTCTCGAGCCTCCTTCTGAATTTATTATTAAGGTTCAAGACATCAACGACAATGC
CCCCGAGTTTCTCAATGGACCTTACCATGCTACTGTTCCAGAGATGTCCATCTTGGGTACATCT
GTCACTAATGTAACGGCCACTGATGCTGACGATCCAGTTTATGGAAACAGTGCAAAGTTGGTTT
ACAGTATCTTGGAGGGACAGCCGTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGC
CCTTCCTAACATGGACAGAGAGGCCAAGGAGGAATACCTGGTTGTAATTCAAGCCAAAGATATG
GGTGGGCATTCCGGTGGTCTGTCTGGAACCACGACACTCACAGTGACGCTTACCGATGTGAATG
ACAATCCTCCAAAATTTGCTCAAAGTTTGTATCACTTCTCAGTACCAGAAGATGTGGTCCTTGG
CACTGCAATAGGAAGGGTTAAAGCCAATGACCAGGATATTGGTGAAAATGCACAATCTTCCTAT
GACATCATTGATGGAGATGGGACAGCACTATTTGAAATCACTTCTGATGCCCAGGCACAGGATG
GTGTTATAAGACTAAGAAAGCCTCTGGACTTTGAGACCAAAAAATCCTATACTCTGAAGGTGGA
GGCAGCCAATATCCACATCGACCCACGTTTCAGTGGCAGGGGACCCTTTAAAGATACAGCAACA
GTCAAAATTGTTGTAGAGGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTCCTTG
AAGTTCATGAAAATGCTGCCTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATAT
CACTTCCAGCCCAATAAGGTTTTCCATTGACCGCCACACTGACTTGGAGAGACAGTTCAACATC
AATGCAGATGATGGGAAGATAACACTGGCGACCCCACTGGACAGAGAACTAAGTGTGTGGCACA
ACATCTCCATCATTGCTACTGAGATCAGGAACCACAGTCAGATATCGCGAGTGCCTGTTGCTAT
TAAAGTGCTGGATGTCAATGACAACGCCCCTGAATTCGCGTCCGAATATGAGGCATTTTTATGT
GAAAATGGAAAACCCGGCCAAGTCATTCAAACAGTAAGCGCCATGGACAAAGACGATCCCAAAA
ATGGACATTTTTTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAACCCAAATTTCACCATCAA
GAAAAACGAAGATAATTCCCTGAGCATTCTGGCAAAACATAATGGATTCAACCGCCAGAAGCAA
GAAGTCTACCTTCTGCCTATCGTGATCAGTGACAGTGGGAACCCCCCTCTGAGTAGCACCAGTA
CCCTGACCATCCGCGTCTGTGGCTGTAGCAATGACGGCGTGGTTCAGTCGTGCAATGTCGAAGC
TTATGTCCTTCCTATTGGGCTCAGTATGGGCGCGTTAATTGCTATATTAGCCTGCATCATTTTG
CTGCTCGTCATTGTGGTTCTGTTCGTTACCCTGAGGCGGCATAAAAATGAACCACTAATAATCA
AAGATGATGAAGACGTTCGAGAAAACATCATTCGCTACGACGACGAAGGAGGCGGGGAGGAGGA
CACAGAGGCTTTTGACATTGCAACTTTGCAAAACCCAGATGGAATTAATGGATTTTTACCCCGT
AAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTG
TTGATGTCGATGAATTTATAAATGTAAGGCTTCATGAGGCAGATAATGACCCCACGGCCCCACC
ATATGACTCCATTCAGATTTATGGCTATGAAGGCCGAGGGTCTGTGGCTGGCTCTCTCAGCTCG
TTGGAGTCCACCACATCAGACTCAGACCAGAATTTTGACTACCTCAGTGACTGGGGTCCCCGCT
TTAAGAGACTGGGCGAACTCTACTCTGTTGGTGAAAGTGACAAAGAAACTTGACAGTGGATTAC
ATAAATAATCAATGGAACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
ATGTGGCTATTTGTTTTAGAGGCAAGTTTAGCACCAATCATCTATAAACTCAACCACATTTTAA
TGTTGAACCAAAAAAAATAATAAAAAATAAAAAGTATATGTTAGGAGGTGA

hide sequence

RefSeq Acc Id:

XM_017601377 ⟹ XP_017456866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,494,552 - 5,900,455 (+)	NCBI
mRatBN7.2	19	5,494,039 - 5,894,245 (+)	NCBI
Rnor_6.0	19	6,046,721 - 6,426,876 (+)	NCBI

Sequence:

show sequence

TGTCTGTTTCCCGGCTCTCTGAACCCGTGGCAGAGCTGTAAGTAAGCGCTTCACAGTGCGTGAT
GAATTGGATGGCTTCGGACCCGAGGCAAAAAAAATAATTGTCTCATTTTCGTGCTGATTTGCTT
AACTGGTGGGACCATGCCAGAAAGGCTAGCTGAGACGCTTTTGGACCTCTGGACTCCATTAATA
ATATTATGGATTACTCTTCCCTCTTTTGTGTACATGGCTCCGATGAATCAGGCTCACGTTTTAA
CTACTGGATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGAAATGCGGATTTTGAACCGCTCCAA
AAGAGGTTGGGTTTGGAATCAAATGTTTGTTCTGGAAGAATTTTCTGGACCTGAACCGATTCTC
GTTGGCCGGTTACACACAGATCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCGGGTG
ATGGAGCCGGCACAATCTTTCAAATAAACGATATAACTGGAGACATCCATGCTATCAAAAGACT
TGACCGAGAGGAAAAGGCTGAGTATACGTTAACAGCTCAGGCAGTGGACTGGGAGACAAACAAA
CCTCTCGAGCCTCCTTCTGAATTTATTATTAAGGTTCAAGACATCAACGACAATGCCCCCGAGT
TTCTCAATGGACCTTACCATGCTACTGTTCCAGAGATGTCCATCTTGGGTACATCTGTCACTAA
TGTAACGGCCACTGATGCTGACGATCCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGTATC
TTGGAGGGACAGCCGTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCTA
ACATGGACAGAGAGGCCAAGGAGGAATACCTGGTTGTAATTCAAGCCAAAGATATGGGTGGGCA
TTCCGGTGGTCTGTCTGGAACCACGACACTCACAGTGACGCTTACCGATGTGAATGACAATCCT
CCAAAATTTGCTCAAAGTTTGTATCACTTCTCAGTACCAGAAGATGTGGTCCTTGGCACTGCAA
TAGGAAGGGTTAAAGCCAATGACCAGGATATTGGTGAAAATGCACAATCTTCCTATGACATCAT
TGATGGAGATGGGACAGCACTATTTGAAATCACTTCTGATGCCCAGGCACAGGATGGTGTTATA
AGACTAAGAAAGCCTCTGGACTTTGAGACCAAAAAATCCTATACTCTGAAGGTGGAGGCAGCCA
ATATCCACATCGACCCACGTTTCAGTGGCAGGGGACCCTTTAAAGATACAGCAACAGTCAAAAT
TGTTGTAGAGGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTCCTTGAAGTTCAT
GAAAATGCTGCCTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATATCACTTCCA
GCCCAATAAGGTTTTCCATTGACCGCCACACTGACTTGGAGAGACAGTTCAACATCAATGCAGA
TGATGGGAAGATAACACTGGCGACCCCACTGGACAGAGAACTAAGTGTGTGGCACAACATCTCC
ATCATTGCTACTGAGATCAGGAACCACAGTCAGATATCGCGAGTGCCTGTTGCTATTAAAGTGC
TGGATGTCAATGACAACGCCCCTGAATTCGCGTCCGAATATGAGGCATTTTTATGTGAAAATGG
AAAACCCGGCCAAGTCATTCAAACAGTAAGCGCCATGGACAAAGACGATCCCAAAAATGGACAT
TTTTTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAACCCAAATTTCACCATCAAGAAAAACG
AAGATAATTCCCTGAGCATTCTGGCAAAACATAATGGATTCAACCGCCAGAAGCAAGAAGTCTA
CCTTCTGCCTATCGTGATCAGTGACAGTGGGAACCCCCCTCTGAGTAGCACCAGTACCCTGACC
ATCCGCGTCTGTGGCTGTAGCAATGACGGCGTGGTTCAGTCGTGCAATGTCGAAGCTTATGTCC
TTCCTATTGGGCTCAGTATGGGCGCGTTAATTGCTATATTAGCCTGCATCATTTTGCTGCTCGT
CATTGTGGTTCTGTTCGTTACCCTGAGGCGGCATAAAAATGAACCACTAATAATCAAAGATGAT
GAAGACGTTCGAGAAAACATCATTCGCTACGACGACGAAGGAGGCGGGGAGGAGGACACAGAGG
CTTTTGACATTGCAACTTTGCAAAACCCAGATGGAATTAATGGATTTTTACCCCGGTGGGGATT
GCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCT
TCGTTCCCTCCACTTCATCTTCTTCCACAAGGACACAGAGATAAACTGTATTCCACAGTGGACC
ACATCAGAGACAGATGGTTTTATTGCTAGCGTGTGAATTTATTTGTTTAATCCTCAAAATAAAT
ATTTTATTGATGTCCAATAATGCTTTTATTTATTAAGGTTGGTAATCTATAGATTAAGGGATTA
TATGGGGGAAACTAAATTATATCCATTAATAATCCTTTAGATTGTTTTATATTAATATCTATAC
AATGAATGTTTAATACATGTACATTTTGATCAGATAAGTATGGCAGGCAATATTATCAAGGGGA
GAGGTAATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTC
CCAGAGAAACTTTTGGACTATTTTCTATTTTCTTCATAATCCTAGTATTTGGTGTTTTTACTAC
AAGCACAAACATCTGGAAGTATATTGATTCCTGTGAATATTTAAACTCTAGACTTTTAGATATT
TACATAATGCCCCACCCAGTAACATTCTTCAAGTTTCCCTCTCCCAAATAATTTAGAGCAGAAA
CTGATTTGTACATAATTTTACTGCTTATGTTTTTTTACACTTCTGTCCCTGGTCATGGTGATGC
GCAGAATGTCTTAGACTTCAAAAGCAGAACAGCACTAGAAGATGTGAGCATATTTAATTTGTAA
TGCAAACCTGCCATGTAGGAGTAGAAAATGTATTATAAAACTCGAGTATTACATGCAGATCATT
TTACTTTTCTACTTTGCTTTAATGCAATATTGTTTATTTACTCCATGCGTTGTATTCAGAGAAA
CTCCTGTATTGTTTCCTACTTTGTGAAATATATTTTTATAAATACCTTTGTTGTCATCATTTTT
TCAGCTATATGAAGATTTCTGAGCAGAACTATTGACTTTAACTAAAATGCCAAACTGTACAATC
ACACCGTGGGCCACTGTTAGTTTTAAGCATCTTTATTATAATAAAGAACCAGGGAACAGAAATA
GATTGTTATTGATCCCATAACAAGAAAACATCAAGACTTAAAAATAAGCGCCATAGCTAAAAGA
TAGTTGACTGTGTTTTGGGGGTCCCTAAATGCAGAGGATTGGGTGGAGGTAGCACAAAAAGGGG
TTCAAAGATCAAGTTCTACATAGAAAAATTCTCTAGGTGAGATTACAGTCCACGAGGTAGCAAA
ACAAAGGGATTGAAGCTTTGGGGAAAGAACCAAAACTTCATTGCAGATGTGAAAGCCATTCTTT
ACTAGATCCTTAGAGGATCCTTAGAACAAGACTCATGGGCTCCTGTCACCTACTACTTTAGTCC
CTAGCGTGGGGATACCTAAGGAAAACATGGATTTGGCTTGGGGATGGAAGGCAACAGTTTCTGA
AAGCCGTTTTCACCATATCTGAATCAAAGCGACTAAATATTCAGCTGACACATTAATAGCTATT
CAGTGGCTTACCACCACCTTGTAGCGCACTATAGCCTGATCACAATCTTTCATTTACGCTTCTC
TCAGTGGCTACCAGGCACTTTTCATAAAGTCAAAGGGAGAGTCCTTAGTGACTTTTATGTACAT
CAGATTAGCAAGCATCATAAAAACTATTACTATAACTTATAGTAACAATAAAATTTCAAATCCT
GACTCTCTTACATGCTATAAGCCAAGGCAGAATTAATTTTTATTTTCCATTTTAATTTCAAAAT
CATCTCTTTTTAAAGGAAAGTAGTGTACAAGAATGGGTAACAGATATATTACCCTATTCTTTTA
ATAGGATTATAAGATAAATATCCCCAGTGTTGATCAATAGAAAACTATCCTTATGAAAGCATTC
ATGGGAAAAAAGGCAAAGTATTTAGAACAAGTTTTCTTATCTATCTTTAAATTACTTTGTCCAG
AAAGACATCATGGACACATGGGCCCATAACAACATTACCGTTTACTATTATTGAAGTATTTTGG
GCATTAAAGCCAATCTAAAGTTTTGATATGCTGGACAAAGTGGTGCTATGTATGATTATGTAGG
GGTTATGCATGTTCTTGCTATATGAAGTACACTTTTATGCTACCCTGAATTTAAATTATGCTCA
CGAAGGCCAATATGCAGACCATTAGACTGTCACATTTACTTTACCAACAAACTTACTAGAACTC
CCATATTCAGAATAGGACAATGGGGACCCAAATTGGTTGGTGTTTTTTTTGTTTGTTTGTTTGG
TTGGTTGGTTGGTTTTAGTTTTGAGATTTAATGATTCCTCTCTTAAACCTCTTCAAGCAATGGA
TTCTAACTTTGTTAAAATTTTGTATTTATGCAATTATTTTGTTCTTGCAATATTGACACATCAG
ATGATTCCTTGCTTACATATCAGTGGTAACTTATCAAATATAAAATTGCCACACGTTACAGTCA
TTACTATGTCTGTGGTCTTTGTGTGTCCCAAGGACAAGTCTCTTTTAATGCTTGCCCAAAAACT
CTGTGCCAAATGACAGGTGAAACAAAGTTGATCTCTTTCTGCTCCCTTTACTTGTAAGGCTCTT
TTCTGAAAAATTGAGGTATCTATGCATGCATAGAGGCCTATTGGGATCAATTCAGCCTCTACCT
TCTGTATTATTTGATCAACCATTTTTTAATATCTACACAAACATATCATCTAATATTAGTAAGC
CATTTTTAATAAAATTCTCACTACAAGTATAGTCAATACATATTTAAAGTGGCTTATGATAAGA
TGGTTGAATTTTATTCATCTGATGCCTTTCTCACCCCAAATTTCCTGCCGATGACACAAACTTT
ATAGCAAACACGTTTTGCACCAAAAAATAAAAAATGTGTAAGTGTGTACGTGCATATATAACCC
GAAAGGGAACTTGGATGCATCAGAACACCCAGTGAGGAAAGAATCCTCGGAAAGAGACAAATGT
GTCTTTGAGAGTTTGCTTAATCATATGCTTAAAGTAAGACAGGTCTCTGCATGAGATGTAGAAA
TCTCCCAGGAGCAGCCGGCTCCACACTGAGAATCCACAGAGGGCTGAGCTATCTGTATTTTGGA
GAAGGAAAGCGGGTGCTGAGAGCTAAGTAGCCAATTACTTTTTATAGCCACATAAGGACTGGAG
GCAAGTAGTCCTTTGCAACATGTTGTATTATGCGATCGTTGGCTTTGCAGGGAATCTCACGAAT
GTATAACCTTCTGATTGCCTTTTTGATTGAAAGTTCCATCTGAGATCAAGGCAGTGCAACCAGT
AATAAGATTTCAAAAAATCCCATCACTAGCACTGTTGGAAAGGTTGAGCGTGCCTGAAATCCCA
TCACTGTCAGTCAAAGAGATAAGGTAACAGTGGGCATCACTATAAAAGCTGCATGAATGCACAA
TTTAAACATGAACATCAACACAAAAAAGAACACACACACATTCATATGAGTGCCCATAAATATA
CATATGCCCATGTACACACATATGTACACAAATACATGCATACGCATGCACACACACATACACT
TAAGTTATTTTGGATAATTTATACTAATATGTTCTCGTTTCAATAATAATTTTTCATATCACAG
TCTCGCATACTGCAAAAATACTTGAAATGATGGTTATTTGCTTTTCTGACTCTATCCTTAAATT
TGAAAGAAATCTGTCTAGTGGTAAAGGTTTTTAAATGTGAGTTTTTGTTTATGAACACAATAAC
AGCTTATAAAGCCTGGACTTAGAATTAAGTGCATCTCACCAAGAAGCTGGATTTAGATGCTTTT
GTATCATTGTATTTTTGTGGAGATAATAATTGTAGAATATATTTTGTAGGAAATAATTTTCTCT
ATGTTTACATTTCTTTGATCCAACAGTTTTCTTGGCTAAACAAACTCCTTTTCTTTGTTGCTCA
GATAACCAAAAAGTGAATAAAATGTTTACTATCATTGTT

hide sequence

RefSeq Acc Id:

XM_017601378 ⟹ XP_017456867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,494,552 - 5,901,950 (+)	NCBI
mRatBN7.2	19	5,494,039 - 5,901,810 (+)	NCBI
Rnor_6.0	19	6,046,721 - 6,431,502 (+)	NCBI

Sequence:

show sequence

TGTCTGTTTCCCGGCTCTCTGAACCCGTGGCAGAGCTGTAAGTAAGCGCTTCACAGTGCGTGAT
GAATTGGATGGCTTCGGACCCGAGGCAAAAAAAATAATTGTCTCATTTTCGTGCTGATTTGCTT
AACTGGTGGGACCATGCCAGAAAGGCTAGCTGAGACGCTTTTGGACCTCTGGACTCCATTAATA
ATATTATGGATTACTCTTCCCTCTTTTGTGTACATGGCTCCGATGAATCAGGCTCACGTTTTAA
CTACTGGATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGAAATGCGGATTTTGAACCGCTCCAA
AAGAGGTTGGGTTTGGAATCAAATGTTTGTTCTGGAAGAATTTTCTGGACCTGAACCGATTCTC
GTTGGCCGGTTACACACAGATCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCGGGTG
ATGGAGCCGGCACAATCTTTCAAATAAACGATATAACTGGAGACATCCATGCTATCAAAAGACT
TGACCGAGAGGAAAAGGCTGAGTATACGTTAACAGCTCAGGCAGTGGACTGGGAGACAAACAAA
CCTCTCGAGCCTCCTTCTGAATTTATTATTAAGGTTCAAGACATCAACGACAATGCCCCCGAGT
TTCTCAATGGACCTTACCATGCTACTGTTCCAGAGATGTCCATCTTGGGTACATCTGTCACTAA
TGTAACGGCCACTGATGCTGACGATCCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGTATC
TTGGAGGGACAGCCGTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCTA
ACATGGACAGAGAGGCCAAGGAGGAATACCTGGTTGTAATTCAAGCCAAAGATATGGGTGGGCA
TTCCGGTGGTCTGTCTGGAACCACGACACTCACAGTGACGCTTACCGATGTGAATGACAATCCT
CCAAAATTTGCTCAAAGTTTGTATCACTTCTCAGTACCAGAAGATGTGGTCCTTGGCACTGCAA
TAGGAAGGGTTAAAGCCAATGACCAGGATATTGGTGAAAATGCACAATCTTCCTATGACATCAT
TGATGGAGATGGGACAGCACTATTTGAAATCACTTCTGATGCCCAGGCACAGGATGGTGTTATA
AGACTAAGAAAGCCTCTGGACTTTGAGACCAAAAAATCCTATACTCTGAAGGTGGAGGCAGCCA
ATATCCACATCGACCCACGTTTCAGTGGCAGGGGACCCTTTAAAGATACAGCAACAGTCAAAAT
TGTTGTAGAGGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTCCTTGAAGTTCAT
GAAAATGCTGCCTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATATCACTTCCA
GCCCAATAAGGTTTTCCATTGACCGCCACACTGACTTGGAGAGACAGTTCAACATCAATGCAGA
TGATGGGAAGATAACACTGGCGACCCCACTGGACAGAGAACTAAGTGTGTGGCACAACATCTCC
ATCATTGCTACTGAGATCAGGAACCACAGTCAGATATCGCGAGTGCCTGTTGCTATTAAAGTGC
TGGATGTCAATGACAACGCCCCTGAATTCGCGTCCGAATATGAGGCATTTTTATGTGAAAATGG
AAAACCCGGCCAAGTCATTCAAACAGTAAGCGCCATGGACAAAGACGATCCCAAAAATGGACAT
TTTTTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAACCCAAATTTCACCATCAAGAAAAACG
AAGATAATTCCCTGAGCATTCTGGCAAAACATAATGGATTCAACCGCCAGAAGCAAGAAGTCTA
CCTTCTGCCTATCGTGATCAGTGACAGTGGGAACCCCCCTCTGAGTAGCACCAGTACCCTGACC
ATCCGCGTCTGTGGCTGTAGCAATGACGGCGTGGTTCAGTCGTGCAATGTCGAAGCTTATGTCC
TTCCTATTGGGCTCAGTATGGGCGCGTTAATTGCTATATTAGCCTGCATCATTTTGCTGCTCGT
CATTGTGGTTCTGTTCGTTACCCTGAGGCGGCATAAAAATGAACCACTAATAATCAAAGATGAT
GAAGACGTTCGAGAAAACATCATTCGCTACGACGACGAAGGAGGCGGGGAGGAGGACACAGAGG
CTTTTGACATTGCAACTTTGCAAAACCCAGATGGAATTAATGGATTTTTACCCCATTACAGAAG
AGGCTTCTTAAGAGGAATACCGGAGAATGCTGCCTGAAGAAAAGGACTAAGGACAACAGGGACT
TCAAAGAAAAAAACAGCCAGGACTTCAAAAGAAAAGGAGAGGTCACTAAAGCCACATGTTAGTC
CTTTCAGATCTCCCCCTGTGTATTTAAAAGTCTTTGGGGCCATGCGGATATGAGCAATATTTTA
ACAGTTACTGTCTGATATTGAAAACAGCAATTATGAACCATTGGCTTGGATAATTCCTTATTTC
CCTTGAATATGACTCTTGGGCTCTTGGTAGGTTTTTATTCATATTTTTTTTTAGATTTTAATTC
AACATCTACAGTTTGAGAGCTATGGATTATTTGCCAGGTTTGACAATTTCATGTGTAACTTGAT
GATCAAAGTTTATTGTCAGCACTATCAATAATGATTGTTCAATAAACTTTTAAAATTCCTTCCT
AACAAGAGATATCTTTTCTAGATAGTTTCTGTGACAAGGGAATCACATAGGCTTGACATATTTC
CATTGCTTCTCAAAGAAATGACTTATGATTAGATAAATTAGTACAGAAGCTAATACATGATGAA
ACGTTAGACTTATCTTAAATAATGTGGGGGTTCCAAGGACACAGAGAGATAATAGCACAACCTG
CCGATTCATTCACAGTATGTTAGCACAACCTGCCGATTCATTCACAGTATGTTGCCACAGGCTG
GGCTAAGATTGCATCTTCACCATCTTAGAACTAGCTTTGTAGACAAGCTGGCCTCGAATTCAGA
GATCTGCCTGCCTCTGTCTCTGAAGTGCTGGGATTAAAGGTATGGGTAGAACACCATTGCCTGA
CCAAGTCACCATCTCTTAAAATATGCAGGTCTCAGACTAGGGCTTGGTTATGGAGACATGAATA
TCAATGTTGAGTCAGTAGCTATCTTAATGGACTTCCCAATATTCAAAATCTCATGTGACTCTCT
TGCTCTTTTCCCTCTCTGTCCCCTCTTCTCCTCATTCCCCTCCCCCCTCACTCTACCTGCTCCT
GGCCAACCTCTACTCCTTCTCTCTGTCTTTCTCTGTCTTTACTACCCCCTCGACTCCCCTCCCC
AAATAACCTAAATAAACTCTATTTTATACTAAAAGAAAATCCCATGTGACAATTTTTTCACATC
CTTATTTAGAGAATAGCATAACTAAAACATTCAAGTGTTCTAGATGATTATGATAAAGTAAGTT
CTTGCCTCAAAGTATGATGATGTAAGAGAAGGAAGAGTATAAAAATAGAAGCATTAAATTGATA
AAGTATGATAAGAAATGGATAAGAATGAGACATTCGAAGTAGATTTCACTAGGAAAATTCTGAG
TTGCCATGTTTTATAAAAGCAAATCATAGAACGAGCTAGGGTAGTGGTACTTTAGTGGTTCTCC
TATAGCAAATAAATGGCAGATGCAGTAAATGCAAATGGTGGGTATACATCATCATGGGTAAGGA
GAAAGATTCAGAAGATGTGGAGAGATGAGCGGACACCATAAAAATATTAGAATTAACAACTCTC
ACACCCTTCATGTGGACAACTGGAATGGCAATGGCATGGTCTGACCTGCAGAATTGGGGAAGGT
GTTGTTAGTAGCAGGAATTAAAATTAAGGCATCATGCCAGTCATACATGGACTCTAGAACTGAT
CTTAAGTCTATCCTTGACTTGTGATTTTTTTTAAATGTCACTGATCTTACTGTATGGAGATAGG
ATAGAATGATAGAATGACATGCAAATAGGATTGTTTTAGCCCAGGAACAAATTTGCCTTTGAGT
GCCACAGTGTTAATGACCTGATACAAGTAGGATTCTGGTAGAATATTCATAGTCATGGTATATA
CACTTGATGAGCAAAATAAAATTAAGAGTGAGTTACTTTTTCAGTACCAAAAGGTCAGCCTGAA
AACATACAAGTAATATTAATTACCAAATTAAACACCCCAGACAAAATGTAGTTGTACATAACTC
TTTCTTAATAGGTGTGTTTGTGTGTATCATGCATATGTGTGTATACATATACATGTATGTATAT
ACTACATCATTGGCAATCTAGAAAGTCTTGCACACAAAGTAATGAGAAACACTATTTTAAGAGG
ATGTACCCAAAGAGTATTAACTTCATTTCATTGCTAGCATGTATTCTGTGTATAATCATGTATA
TGGTGAGAGCATTCTTAGTTGATTGGCTTGCTGATTGACATGATAATTATAATGAGGTGTTTGT
TCCTGTAATGAAAGTGACCCAAAACTCAGTTATACCTCCACCTCTTTTGTCTTTTTCCTTTACA
GACATGGTTCTTGTACATGCTGGCCTTGAACTCACTCTGTAGTCCAGGAAATCCTTTAGTTTAT
GATTATCTTATCTATTTTAGCAGGTTTTGGTATATTCTTGTTGTAATATAGTTGGTCCCAGGAA
TATAGTCTTGCACAATAATTATTTAGCACACACACACACACACACACACACACACACACACACA
TCATAGAGAAGGCATTATTAGATATATTTTTGAATATCTGATACAGCTTATGACCTAACAATTT
TTTCAGCTAATTTTATTGGGGTTTTTTATTCTTTATCTTCTTTTACAGTCCAGTCTTTACCCTC
CTCCTGGTCCAGCCTCTAACTGTCCACCCCTACATTCTATACCACCTTCCCTTTCTGTCTACAA
GAGTGTATACCTACCCCTGAAACCCTCACCTGCAACCCAACAGACATCCCCACTACCCTGGGCC
TCAAGTTGCTTGAGGATTAGGTATAAATTCTCTCACTAAGTTAAGACCTAGCAGTCCTTTGCTC
TATATGTGTTGGGAAACTCATATCAGCTTATGCATGATGCCTGGTTGATGGCTCAGTGTCTGAG
AGATGCCTGGGGTCCAGATTAGTTGAGACTGCTGATCTTCCTCAGGTTCTTTCAGCCTTCCCCT
AATTCAACCACAAGAGCCACCAGCTTCTTTCCATTGGCTAGGTGTAAATATTTGCATCTGACTC
TTTCAGCTGCTTTTTGTGCCTTTCAAAGAGCAGCCACGATAGGCTCCTTTTTGTGAGCACATCA
TAGTATCAAGTAATAGTGTTAGGCCTCGGGGTCTCCCCTTGAGTGGATCCCAATTTGGGGCTGT
TGCTGAGATTCCTTTCCCTCAGTCTCCTCTATTTTTGACCCTGTGGTTCTTTCAGACAGGAACA
ACTCTGGGTCAGAGTTTTTGTCTGAGGGATGGTAACCCCATCCCTGTACTTGATGTCTTTCTAC
TTGAGGTGAACTCCACAAGACTCCTCTTCCCACACTAGGGCATTTCTAAGGTCCCTCCCTTTAA
GTACTGAGAGTCTCTCACCTCCCTGGTCTCTGGTACATTCTAGAGTATCTTCCTCCTACTTCCC
AAGGTTTTCTAACTTTATTCTTTCTGTTGGCCATCAGAGTTTCAGTTCTGTTCCCCCAAATACC
TGACCATGTTTCCCTCTTCCCTTCCCTGTCCCCTTTTCCACCCAGGTCCCTCTGTCCTTACCCC
ATGTCCCATGATTTAAAACCTTTAGAAAATAAGACAAGGAACTAAGGAAACAACTTAATTT

hide sequence

RefSeq Acc Id:

XM_017601380 ⟹ XP_017456869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,494,552 - 5,901,950 (+)	NCBI
mRatBN7.2	19	5,494,038 - 5,901,810 (+)	NCBI
Rnor_6.0	19	6,046,721 - 6,431,502 (+)	NCBI

Sequence:

show sequence

TGTCTGTTTCCCGGCTCTCTGAACCCGTGGCAGAGCTGTAAGTAAGCGCTTCACAGTGCGTGAT
GAATTGGATGGCTTCGGACCCGAGGCAAAAAAAATAATTGTCTCATTTTCGTGCTGATTTGCTT
AACTGGTGGGACCATGCCAGAAAGGCTAGCTGAGACGCTTTTGGACCTCTGGACTCCATTAATA
ATATTATGGATTACTCTTCCCTCTTTTGTGTACATGGCTCCGATGAATCAGGCTCACGTTTTAA
CTACTGGATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGAAATGCGGATTTTGAACCGCTCCAA
AAGAGGTTGGGTTTGGAATCAAATGTTTGTTCTGGAAGAATTTTCTGGACCTGAACCGATTCTC
GTTGGCCGGTTACACACAGATCTGGATCCTGGGAGCAAAAAAATCAAGTATATCCTATCGGGTG
ATGGAGCCGGCACAATCTTTCAAATAAACGATATAACTGGAGACATCCATGCTATCAAAAGACT
TGACCGAGAGGAAAAGGCTGAGTATACGTTAACAGCTCAGGCAGTGGACTGGGAGACAAACAAA
CCTCTCGAGCCTCCTTCTGAATTTATTATTAAGGTTCAAGACATCAACGACAATGCCCCCGAGT
TTCTCAATGGACCTTACCATGCTACTGTTCCAGAGATGTCCATCTTGGGTACATCTGTCACTAA
TGTAACGGCCACTGATGCTGACGATCCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGTATC
TTGGAGGGACAGCCGTATTTTTCCATTGAGCCTGAAACAGCTATTATAAAAACTGCCCTTCCTA
ACATGGACAGAGAGGCCAAGGAGGAATACCTGGTTGTAATTCAAGCCAAAGATATGGGTGGGCA
TTCCGGTGGTCTGTCTGGAACCACGACACTCACAGTGACGCTTACCGATGTGAATGACAATCCT
CCAAAATTTGCTCAAAGTTTGTATCACTTCTCAGTACCAGAAGATGTGGTCCTTGGCACTGCAA
TAGGAAGGGTTAAAGCCAATGACCAGGATATTGGTGAAAATGCACAATCTTCCTATGACATCAT
TGATGGAGATGGGACAGCACTATTTGAAATCACTTCTGATGCCCAGGCACAGGATGGTGTTATA
AGACTAAGAAAGCCTCTGGACTTTGAGACCAAAAAATCCTATACTCTGAAGGTGGAGGCAGCCA
ATATCCACATCGACCCACGTTTCAGTGGCAGGGGACCCTTTAAAGATACAGCAACAGTCAAAAT
TGTTGTAGAGGATGCTGATGAGCCTCCGGTCTTCTCTTCACCGACTTACCTCCTTGAAGTTCAT
GAAAATGCTGCCTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATATCACTTCCA
GCCCAATAAGGTTTTCCATTGACCGCCACACTGACTTGGAGAGACAGTTCAACATCAATGCAGA
TGATGGGAAGATAACACTGGCGACCCCACTGGACAGAGAACTAAGTGTGTGGCACAACATCTCC
ATCATTGCTACTGAGATCAGGAACCACAGTCAGATATCGCGAGTGCCTGTTGCTATTAAAGTGC
TGGATGTCAATGACAACGCCCCTGAATTCGCGTCCGAATATGAGGCATTTTTATGTGAAAATGG
AAAACCCGGCCAAGTCATTCAAACAGTAAGCGCCATGGACAAAGACGATCCCAAAAATGGACAT
TTTTTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAACCCAAATTTCACCATCAAGAAAAACG
AAGATAATTCCCTGAGCATTCTGGCAAAACATAATGGATTCAACCGCCAGAAGCAAGAAGTCTA
CCTTCTGCCTATCGTGATCAGTGACAGTGGGAACCCCCCTCTGAGTAGCACCAGTACCCTGACC
ATCCGCGTCTGTGGCTGTAGCAATGACGGCGTGGTTCAGTCGTGCAATGTCGAAGCTTATGTCC
TTCCTATTGGGCTCAGTATGGGCGCGTTAATTGCTATATTAGCCTGCATCATTTTGCTGCTCGT
CATTGTGGTTCTGTTCGTTACCCTGAGGCGGCATAAAAATGAACCACTAATAATCAAAGATGAT
GAAGACGTTCGAGAAAACATCATTCGCTACGACGACGAAGGAGGCGGGGAGGAGGACACAGAGG
CTTTTGACATTGCAACTTTGCAAAACCCAGATGGAATTAATGGATTTTTACCCCGTAAGGATAT
TAAACCAGATTTGCAGTTTATGCCAAGATTACAGAAGAGGCTTCTTAAGAGGAATACCGGAGAA
TGCTGCCTGAAGAAAAGGACTAAGGACAACAGGGACTTCAAAGAAAAAAACAGCCAGGACTTCA
AAAGAAAAGGAGAGGTCACTAAAGCCACATGTTAGTCCTTTCAGATCTCCCCCTGTGTATTTAA
AAGTCTTTGGGGCCATGCGGATATGAGCAATATTTTAACAGTTACTGTCTGATATTGAAAACAG
CAATTATGAACCATTGGCTTGGATAATTCCTTATTTCCCTTGAATATGACTCTTGGGCTCTTGG
TAGGTTTTTATTCATATTTTTTTTTAGATTTTAATTCAACATCTACAGTTTGAGAGCTATGGAT
TATTTGCCAGGTTTGACAATTTCATGTGTAACTTGATGATCAAAGTTTATTGTCAGCACTATCA
ATAATGATTGTTCAATAAACTTTTAAAATTCCTTCCTAACAAGAGATATCTTTTCTAGATAGTT
TCTGTGACAAGGGAATCACATAGGCTTGACATATTTCCATTGCTTCTCAAAGAAATGACTTATG
ATTAGATAAATTAGTACAGAAGCTAATACATGATGAAACGTTAGACTTATCTTAAATAATGTGG
GGGTTCCAAGGACACAGAGAGATAATAGCACAACCTGCCGATTCATTCACAGTATGTTAGCACA
ACCTGCCGATTCATTCACAGTATGTTGCCACAGGCTGGGCTAAGATTGCATCTTCACCATCTTA
GAACTAGCTTTGTAGACAAGCTGGCCTCGAATTCAGAGATCTGCCTGCCTCTGTCTCTGAAGTG
CTGGGATTAAAGGTATGGGTAGAACACCATTGCCTGACCAAGTCACCATCTCTTAAAATATGCA
GGTCTCAGACTAGGGCTTGGTTATGGAGACATGAATATCAATGTTGAGTCAGTAGCTATCTTAA
TGGACTTCCCAATATTCAAAATCTCATGTGACTCTCTTGCTCTTTTCCCTCTCTGTCCCCTCTT
CTCCTCATTCCCCTCCCCCCTCACTCTACCTGCTCCTGGCCAACCTCTACTCCTTCTCTCTGTC
TTTCTCTGTCTTTACTACCCCCTCGACTCCCCTCCCCAAATAACCTAAATAAACTCTATTTTAT
ACTAAAAGAAAATCCCATGTGACAATTTTTTCACATCCTTATTTAGAGAATAGCATAACTAAAA
CATTCAAGTGTTCTAGATGATTATGATAAAGTAAGTTCTTGCCTCAAAGTATGATGATGTAAGA
GAAGGAAGAGTATAAAAATAGAAGCATTAAATTGATAAAGTATGATAAGAAATGGATAAGAATG
AGACATTCGAAGTAGATTTCACTAGGAAAATTCTGAGTTGCCATGTTTTATAAAAGCAAATCAT
AGAACGAGCTAGGGTAGTGGTACTTTAGTGGTTCTCCTATAGCAAATAAATGGCAGATGCAGTA
AATGCAAATGGTGGGTATACATCATCATGGGTAAGGAGAAAGATTCAGAAGATGTGGAGAGATG
AGCGGACACCATAAAAATATTAGAATTAACAACTCTCACACCCTTCATGTGGACAACTGGAATG
GCAATGGCATGGTCTGACCTGCAGAATTGGGGAAGGTGTTGTTAGTAGCAGGAATTAAAATTAA
GGCATCATGCCAGTCATACATGGACTCTAGAACTGATCTTAAGTCTATCCTTGACTTGTGATTT
TTTTTAAATGTCACTGATCTTACTGTATGGAGATAGGATAGAATGATAGAATGACATGCAAATA
GGATTGTTTTAGCCCAGGAACAAATTTGCCTTTGAGTGCCACAGTGTTAATGACCTGATACAAG
TAGGATTCTGGTAGAATATTCATAGTCATGGTATATACACTTGATGAGCAAAATAAAATTAAGA
GTGAGTTACTTTTTCAGTACCAAAAGGTCAGCCTGAAAACATACAAGTAATATTAATTACCAAA
TTAAACACCCCAGACAAAATGTAGTTGTACATAACTCTTTCTTAATAGGTGTGTTTGTGTGTAT
CATGCATATGTGTGTATACATATACATGTATGTATATACTACATCATTGGCAATCTAGAAAGTC
TTGCACACAAAGTAATGAGAAACACTATTTTAAGAGGATGTACCCAAAGAGTATTAACTTCATT
TCATTGCTAGCATGTATTCTGTGTATAATCATGTATATGGTGAGAGCATTCTTAGTTGATTGGC
TTGCTGATTGACATGATAATTATAATGAGGTGTTTGTTCCTGTAATGAAAGTGACCCAAAACTC
AGTTATACCTCCACCTCTTTTGTCTTTTTCCTTTACAGACATGGTTCTTGTACATGCTGGCCTT
GAACTCACTCTGTAGTCCAGGAAATCCTTTAGTTTATGATTATCTTATCTATTTTAGCAGGTTT
TGGTATATTCTTGTTGTAATATAGTTGGTCCCAGGAATATAGTCTTGCACAATAATTATTTAGC
ACACACACACACACACACACACACACACACACACACATCATAGAGAAGGCATTATTAGATATAT
TTTTGAATATCTGATACAGCTTATGACCTAACAATTTTTTCAGCTAATTTTATTGGGGTTTTTT
ATTCTTTATCTTCTTTTACAGTCCAGTCTTTACCCTCCTCCTGGTCCAGCCTCTAACTGTCCAC
CCCTACATTCTATACCACCTTCCCTTTCTGTCTACAAGAGTGTATACCTACCCCTGAAACCCTC
ACCTGCAACCCAACAGACATCCCCACTACCCTGGGCCTCAAGTTGCTTGAGGATTAGGTATAAA
TTCTCTCACTAAGTTAAGACCTAGCAGTCCTTTGCTCTATATGTGTTGGGAAACTCATATCAGC
TTATGCATGATGCCTGGTTGATGGCTCAGTGTCTGAGAGATGCCTGGGGTCCAGATTAGTTGAG
ACTGCTGATCTTCCTCAGGTTCTTTCAGCCTTCCCCTAATTCAACCACAAGAGCCACCAGCTTC
TTTCCATTGGCTAGGTGTAAATATTTGCATCTGACTCTTTCAGCTGCTTTTTGTGCCTTTCAAA
GAGCAGCCACGATAGGCTCCTTTTTGTGAGCACATCATAGTATCAAGTAATAGTGTTAGGCCTC
GGGGTCTCCCCTTGAGTGGATCCCAATTTGGGGCTGTTGCTGAGATTCCTTTCCCTCAGTCTCC
TCTATTTTTGACCCTGTGGTTCTTTCAGACAGGAACAACTCTGGGTCAGAGTTTTTGTCTGAGG
GATGGTAACCCCATCCCTGTACTTGATGTCTTTCTACTTGAGGTGAACTCCACAAGACTCCTCT
TCCCACACTAGGGCATTTCTAAGGTCCCTCCCTTTAAGTACTGAGAGTCTCTCACCTCCCTGGT
CTCTGGTACATTCTAGAGTATCTTCCTCCTACTTCCCAAGGTTTTCTAACTTTATTCTTTCTGT
TGGCCATCAGAGTTTCAGTTCTGTTCCCCCAAATACCTGACCATGTTTCCCTCTTCCCTTCCCT
GTCCCCTTTTCCACCCAGGTCCCTCTGTCCTTACCCCATGTCCCATGATTTAAAACCTTTAGAA
AATAAGACAAGGAACTAAGGAAACAACTTAATTT

hide sequence

RefSeq Acc Id:

XM_039098039 ⟹ XP_038953967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,494,552 - 5,829,010 (+)	NCBI
mRatBN7.2	19	5,494,041 - 5,822,671 (+)	NCBI

RefSeq Acc Id:

XM_039098040 ⟹ XP_038953968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,494,552 - 5,817,154 (+)	NCBI
mRatBN7.2	19	5,494,038 - 5,810,719 (+)	NCBI

RefSeq Acc Id:

XM_039098041 ⟹ XP_038953969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,494,552 - 5,817,154 (+)	NCBI
mRatBN7.2	19	5,494,038 - 5,813,828 (+)	NCBI

RefSeq Acc Id:

XM_063278320 ⟹ XP_063134390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,636,132 - 5,900,455 (+)	NCBI

RefSeq Acc Id:

XM_063278321 ⟹ XP_063134391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,822,585 - 5,900,455 (+)	NCBI

RefSeq Acc Id:

XM_063278322 ⟹ XP_063134392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	5,771,279 - 5,900,455 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_445845	(Get FASTA)	NCBI Sequence Viewer
	XP_017456866	(Get FASTA)	NCBI Sequence Viewer
	XP_017456867	(Get FASTA)	NCBI Sequence Viewer
	XP_017456869	(Get FASTA)	NCBI Sequence Viewer
	XP_038953967	(Get FASTA)	NCBI Sequence Viewer
	XP_038953968	(Get FASTA)	NCBI Sequence Viewer
	XP_038953969	(Get FASTA)	NCBI Sequence Viewer
	XP_063134390	(Get FASTA)	NCBI Sequence Viewer
	XP_063134391	(Get FASTA)	NCBI Sequence Viewer
	XP_063134392	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF87054	(Get FASTA)	NCBI Sequence Viewer
	EDL87262	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072182
	ENSRNOP00000078548
GenBank Protein	O54800	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_445845 ⟸ NM_053393
- Peptide Label:	precursor
- UniProtKB:	O54801 (UniProtKB/Swiss-Prot), O54800 (UniProtKB/Swiss-Prot), A0A8I6AFP6 (UniProtKB/TrEMBL), A6JXY4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPERLAETLLDLWTPLIILWITLPSFVYMAPMNQAHVLTTGSPLELSRQSEEMRILNRSKRGWV WNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE KAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTAT DADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGL SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDG TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSGRGPFKDTATVKIVVED ADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKI TLATPLDRELSVWHNISIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQ VIQTVSAMDKDDPKNGHFFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPI VISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVL FVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDIKPDL QFMPRQGLAPVPNGVDVDEFINVRLHEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESTTSD SDQNFDYLSDWGPRFKRLGELYSVGESDKET hide sequence

RefSeq Acc Id:	XP_017456869 ⟸ XM_017601380
- Peptide Label:	isoform X1
- UniProtKB:	O54801 (UniProtKB/Swiss-Prot), O54800 (UniProtKB/Swiss-Prot), A0A8I5ZLG8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPERLAETLLDLWTPLIILWITLPSFVYMAPMNQAHVLTTGSPLELSRQSEEMRILNRSKRGWV WNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE KAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTAT DADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGL SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDG TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSGRGPFKDTATVKIVVED ADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKI TLATPLDRELSVWHNISIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQ VIQTVSAMDKDDPKNGHFFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPI VISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVL FVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDIKPDL QFMPRLQKRLLKRNTGECCLKKRTKDNRDFKEKNSQDFKRKGEVTKATC hide sequence

RefSeq Acc Id:	XP_017456867 ⟸ XM_017601378
- Peptide Label:	isoform X3
- UniProtKB:	O54801 (UniProtKB/Swiss-Prot), O54800 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPERLAETLLDLWTPLIILWITLPSFVYMAPMNQAHVLTTGSPLELSRQSEEMRILNRSKRGWV WNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE KAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTAT DADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGL SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDG TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSGRGPFKDTATVKIVVED ADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKI TLATPLDRELSVWHNISIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQ VIQTVSAMDKDDPKNGHFFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPI VISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVL FVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPHYRRGFLR GIPENAA hide sequence

RefSeq Acc Id:	XP_017456866 ⟸ XM_017601377
- Peptide Label:	isoform X2
- UniProtKB:	O54801 (UniProtKB/Swiss-Prot), O54800 (UniProtKB/Swiss-Prot), A0A0G2K2C1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPERLAETLLDLWTPLIILWITLPSFVYMAPMNQAHVLTTGSPLELSRQSEEMRILNRSKRGWV WNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE KAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTAT DADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGL SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDG TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSGRGPFKDTATVKIVVED ADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKI TLATPLDRELSVWHNISIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQ VIQTVSAMDKDDPKNGHFFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPI VISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVL FVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRWGLPTQR WEERNAIQTGCV hide sequence

Ensembl Acc Id:

ENSRNOP00000072182 ⟸ ENSRNOT00000084126

RefSeq Acc Id:	XP_038953969 ⟸ XM_039098041
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038953968 ⟸ XM_039098040
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038953967 ⟸ XM_039098039
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000093358 ⟸ ENSRNOT00000103567

Ensembl Acc Id:

ENSRNOP00000078548 ⟸ ENSRNOT00000113284

RefSeq Acc Id:	XP_063134390 ⟸ XM_063278320
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063134392 ⟸ XM_063278322
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063134391 ⟸ XM_063278321
- Peptide Label:	isoform X8

Protein Domains

Cadherin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O54800-F1-model_v2	AlphaFold	O54800	1-799	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69286	AgrOrtholog
BioCyc Gene	G2FUF-6592	BioCyc
Ensembl Genes	ENSRNOG00000056643	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000084126	ENTREZGENE
	ENSRNOT00000113284	ENTREZGENE
Gene3D-CATH	4.10.900.10	UniProtKB/Swiss-Prot
	Cadherins	UniProtKB/Swiss-Prot
InterPro	Cadherin	UniProtKB/Swiss-Prot
	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
	Cadherin_cytoplasmic-dom	UniProtKB/Swiss-Prot
	Catenin_binding_dom_sf	UniProtKB/Swiss-Prot
NCBI Gene	84408	ENTREZGENE
PANTHER	CADHERIN-8	UniProtKB/Swiss-Prot
	PTHR24027	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
	Cadherin_C	UniProtKB/Swiss-Prot
PhenoGen	Cdh8	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000056643	RatGTEx
SMART	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49313	UniProtKB/Swiss-Prot
UniProt	A0A0G2K2C1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZLG8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AFP6	ENTREZGENE
	A6JXY4	ENTREZGENE, UniProtKB/TrEMBL
	CADH8_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	O54801	ENTREZGENE
UniProt Secondary	O54801	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Cdh8	cadherin 8			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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