Tcf4 (transcription factor 4) - Rat Genome Database

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Gene: Tcf4 (transcription factor 4) Rattus norvegicus
Analyze
Symbol: Tcf4
Name: transcription factor 4
RGD ID: 69271
Description: Enables bHLH transcription factor binding activity and double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF7L2 complex. Predicted to be active in chromatin. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; Lynch syndrome; and Pitt-Hopkins syndrome. Orthologous to human TCF4 (transcription factor 4); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: immunoglobulin transcription factor 2; ITF-2; R8f DNA-binding protein; RITF-2; SEF-2; SL3-3 enhancer factor 2; TCF-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81865,216,840 - 65,563,186 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1865,216,849 - 65,558,401 (+)EnsemblGRCr8
mRatBN7.21862,941,739 - 63,288,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1862,943,782 - 63,284,425 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1865,021,713 - 65,360,258 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01865,713,660 - 66,051,972 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01863,570,321 - 63,908,645 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01865,285,320 - 65,507,983 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1865,155,685 - 65,507,977 (+)Ensemblrn6Rnor6.0
Rnor_5.01864,471,373 - 64,694,036 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41866,135,863 - 66,359,984 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1861,145,273 - 61,368,542 (+)NCBICelera
RGSC_v3.11866,209,063 - 66,433,179 (+)NCBI
Cytogenetic Map18q12.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
actinomycin D  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bosutinib  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
deguelin  (ISO)
Destruxin B  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
elesclomol  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenpyroximate  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
folpet  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
glycidol  (EXP)
glyphosate  (EXP)
hydroquinone  (ISO)
ketoconazole  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-tosyl-L-phenylalanyl chloromethyl ketone  (ISO)
NCX-4040  (ISO)
nickel sulfate  (ISO)
nitrofen  (EXP)
nitroglycerin  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-tert-Amylphenol  (EXP)
paracetamol  (EXP)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
pyrimidifen  (ISO)
quercetin  (EXP,ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulindac  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thifluzamide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
undecane  (EXP)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (EXP)
vitamin K  (EXP)
warfarin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Frameshift mutational target gene analysis identifies similarities and differences in constitutional mismatch repair-deficiency and Lynch syndrome. Maletzki C, etal., Mol Carcinog. 2017 Jul;56(7):1753-1764. doi: 10.1002/mc.22632. Epub 2017 Mar 30.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Role of the basic helix-loop-helix transcription factor, scleraxis, in the regulation of Sertoli cell function and differentiation. Muir T, etal., Mol Endocrinol. 2005 Aug;19(8):2164-74. Epub 2005 Apr 14.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
11. Isolation of two E-box binding factors that interact with the rat tyrosine hydroxylase enhancer. Yoon SO and Chikaraishi DM, J Biol Chem 1994 Jul 15;269(28):18453-62.
Additional References at PubMed
PMID:1681116   PMID:2105528   PMID:8978694   PMID:8999959   PMID:10903890   PMID:11802795   PMID:11955446   PMID:12651860   PMID:14762206   PMID:15351717   PMID:16425294   PMID:16950124  
PMID:18214987   PMID:19796622   PMID:20231428   PMID:21828274   PMID:21880741   PMID:23740243   PMID:24192035   PMID:25609649   PMID:25963533   PMID:26971948   PMID:27090258   PMID:27665494  
PMID:28951451   PMID:29739711   PMID:32045596   PMID:34748727  


Genomics

Comparative Map Data
Tcf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81865,216,840 - 65,563,186 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1865,216,849 - 65,558,401 (+)EnsemblGRCr8
mRatBN7.21862,941,739 - 63,288,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1862,943,782 - 63,284,425 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1865,021,713 - 65,360,258 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01865,713,660 - 66,051,972 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01863,570,321 - 63,908,645 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01865,285,320 - 65,507,983 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1865,155,685 - 65,507,977 (+)Ensemblrn6Rnor6.0
Rnor_5.01864,471,373 - 64,694,036 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41866,135,863 - 66,359,984 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1861,145,273 - 61,368,542 (+)NCBICelera
RGSC_v3.11866,209,063 - 66,433,179 (+)NCBI
Cytogenetic Map18q12.1NCBI
TCF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381855,222,185 - 55,635,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1855,222,185 - 55,664,787 (-)Ensemblhg38GRCh38
GRCh371852,889,416 - 53,303,188 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361851,040,560 - 51,406,858 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341851,045,966 - 51,406,441NCBI
Celera1849,606,934 - 49,973,119 (-)NCBICelera
Cytogenetic Map18q21.2NCBI
HuRef1849,599,225 - 50,013,477 (-)NCBIHuRef
CHM1_11852,884,825 - 53,298,977 (-)NCBICHM1_1
T2T-CHM13v2.01855,425,274 - 55,839,077 (-)NCBIT2T-CHM13v2.0
Tcf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391869,476,500 - 69,821,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1869,476,427 - 69,822,150 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381869,343,429 - 69,687,967 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1869,343,356 - 69,689,079 (+)Ensemblmm10GRCm38
MGSCv371869,504,146 - 69,847,621 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361869,469,890 - 69,809,713 (+)NCBIMGSCv36mm8
Celera1870,630,746 - 70,974,890 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1843.23NCBI
Tcf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540239,735,600 - 40,066,151 (-)Ensembl
ChiLan1.0NW_00495540239,735,596 - 40,066,151 (-)NCBIChiLan1.0ChiLan1.0
TCF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21772,749,860 - 73,162,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11858,441,348 - 58,855,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01848,603,069 - 48,969,010 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11851,938,357 - 52,351,679 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1851,938,357 - 52,352,030 (-)EnsemblpanPan2panpan1.1
TCF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1120,060,788 - 20,417,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl120,060,788 - 20,417,348 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha121,044,957 - 21,401,584 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0119,945,098 - 20,307,635 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl119,945,046 - 20,305,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1120,000,058 - 20,356,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0119,895,148 - 20,251,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0120,166,172 - 20,523,442 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tcf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494433,171,849 - 33,525,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364978,410,860 - 8,764,296 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364978,410,882 - 8,765,678 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1104,719,151 - 105,079,919 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11104,718,809 - 105,079,919 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21115,117,555 - 115,353,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11824,116,595 - 24,483,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1824,116,547 - 24,478,228 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660601,054,633 - 1,421,014 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624792686,774 - 1,027,397 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624792686,360 - 1,030,199 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tcf4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11561,583,762 - 61,929,619 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tcf4
2690 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:26
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000020431
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185449080186134022Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)186438376279484311Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185335052168120379Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186198220476619168Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)186144685386134022Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185449080176272247Rat
2312600Bp341Blood pressure QTL 3410.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186160038472538878Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185449080168120379Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186289225779484461Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185782524385493247Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
1598832Glom11Glomerulus QTL 112.9kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)185326667186134022Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186289225779484461Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)185219805968120379Rat

Markers in Region
D18Rat87  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81865,415,948 - 65,416,174 (+)Marker Load Pipeline
mRatBN7.21863,140,870 - 63,141,096 (+)MAPPERmRatBN7.2
Rnor_6.01865,366,908 - 65,367,133NCBIRnor6.0
Rnor_5.01864,552,961 - 64,553,186UniSTSRnor5.0
RGSC_v3.41866,217,584 - 66,217,809UniSTSRGSC3.4
RGSC_v3.41866,217,583 - 66,217,809RGDRGSC3.4
Celera1861,226,357 - 61,226,604UniSTS
RGSC_v3.11866,290,766 - 66,291,155RGD
SHRSP x BN Map1837.6799RGD
SHRSP x BN Map1837.6799UniSTS
Cytogenetic Map18q12.1UniSTS
D18Arb7  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81865,470,666 - 65,470,833 (+)Marker Load Pipeline
mRatBN7.21863,195,600 - 63,195,769 (+)MAPPERmRatBN7.2
Rnor_6.01865,420,163 - 65,420,329NCBIRnor6.0
Rnor_5.01864,606,216 - 64,606,382UniSTSRnor5.0
RGSC_v3.41866,272,157 - 66,272,324RGDRGSC3.4
RGSC_v3.41866,272,158 - 66,272,324UniSTSRGSC3.4
Celera1861,280,814 - 61,281,024UniSTS
RGSC_v3.11866,345,358 - 66,345,525RGD
RH 3.4 Map18662.0RGD
RH 3.4 Map18662.0UniSTS
RH 2.0 Map18259.9RGD
SHRSP x BN Map1837.6799RGD
FHH x ACI Map1843.06RGD
Cytogenetic Map18q12.1UniSTS
BE108561  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21863,196,366 - 63,196,526 (+)MAPPERmRatBN7.2
Rnor_6.01865,420,927 - 65,421,086NCBIRnor6.0
Rnor_5.01864,606,980 - 64,607,139UniSTSRnor5.0
RGSC_v3.41866,272,922 - 66,273,081UniSTSRGSC3.4
Celera1861,281,622 - 61,281,781UniSTS
RH 3.4 Map18655.5UniSTS
Cytogenetic Map18q12.1UniSTS
RH142887  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21863,065,460 - 63,065,663 (+)MAPPERmRatBN7.2
Rnor_6.01865,291,324 - 65,291,526NCBIRnor6.0
Rnor_5.01864,477,377 - 64,477,579UniSTSRnor5.0
RGSC_v3.41866,141,867 - 66,142,069UniSTSRGSC3.4
Celera1861,151,277 - 61,151,479UniSTS
RH 3.4 Map18654.5UniSTS
Cytogenetic Map18q12.1UniSTS
AW534410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21863,197,110 - 63,197,279 (+)MAPPERmRatBN7.2
Rnor_6.01865,421,671 - 65,421,839NCBIRnor6.0
Rnor_5.01864,607,724 - 64,607,892UniSTSRnor5.0
RGSC_v3.41866,273,666 - 66,273,834UniSTSRGSC3.4
Celera1861,282,366 - 61,282,534UniSTS
RH 3.4 Map18656.7UniSTS
Cytogenetic Map18q12.1UniSTS
BE120385  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81865,342,375 - 65,342,595 (+)Marker Load Pipeline
mRatBN7.21863,067,291 - 63,067,511 (+)MAPPERmRatBN7.2
Rnor_6.01865,293,155 - 65,293,374NCBIRnor6.0
Rnor_5.01864,479,208 - 64,479,427UniSTSRnor5.0
RGSC_v3.41866,143,698 - 66,143,917UniSTSRGSC3.4
Celera1861,153,108 - 61,153,327UniSTS
RH 3.4 Map18654.5UniSTS
Cytogenetic Map18q12.1UniSTS
BE116587  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21863,249,761 - 63,249,911 (+)MAPPERmRatBN7.2
Rnor_6.01865,474,323 - 65,474,472NCBIRnor6.0
Rnor_5.01864,660,376 - 64,660,525UniSTSRnor5.0
RGSC_v3.41866,326,318 - 66,326,467UniSTSRGSC3.4
Celera1861,335,006 - 61,335,155UniSTS
RH 3.4 Map18656.7UniSTS
Cytogenetic Map18q12.1UniSTS
STS-Z40794  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21863,275,653 - 63,275,991 (+)MAPPERmRatBN7.2
Rnor_6.01865,500,290 - 65,500,627NCBIRnor6.0
Rnor_5.01864,686,343 - 64,686,680UniSTSRnor5.0
RGSC_v3.41866,352,292 - 66,352,629UniSTSRGSC3.4
Celera1861,360,850 - 61,361,187UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001437064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF149284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U09228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020431   ⟹   ENSRNOP00000020431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,373,224 - 65,558,401 (+)Ensembl
mRatBN7.2 Ensembl1862,943,782 - 63,283,340 (+)Ensembl
Rnor_6.0 Ensembl1865,285,318 - 65,507,977 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080844   ⟹   ENSRNOP00000070343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,437,507 - 65,558,401 (+)Ensembl
mRatBN7.2 Ensembl1863,162,395 - 63,283,340 (+)Ensembl
Rnor_6.0 Ensembl1865,388,685 - 65,507,590 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081797   ⟹   ENSRNOP00000070021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,216,849 - 65,558,401 (+)Ensembl
mRatBN7.2 Ensembl1862,943,782 - 63,283,340 (+)Ensembl
Rnor_6.0 Ensembl1865,155,685 - 65,507,592 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114956   ⟹   ENSRNOP00000096285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,391,504 - 65,558,401 (+)Ensembl
mRatBN7.2 Ensembl1863,192,969 - 63,284,425 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118039   ⟹   ENSRNOP00000087117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,486,783 - 65,558,401 (+)Ensembl
mRatBN7.2 Ensembl1863,211,719 - 63,283,340 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000126184   ⟹   ENSRNOP00000106951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,216,849 - 65,558,401 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144722   ⟹   ENSRNOP00000099053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1865,467,694 - 65,558,401 (+)Ensembl
RefSeq Acc Id: NM_053369   ⟹   NP_445821
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,219,645 - 65,558,407 (+)NCBI
mRatBN7.21862,944,515 - 63,283,346 (+)NCBI
Rnor_6.01865,285,320 - 65,507,983 (+)NCBI
Rnor_5.01864,471,373 - 64,694,036 (+)NCBI
RGSC_v3.41866,135,863 - 66,359,984 (+)RGD
Celera1861,145,273 - 61,368,542 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097157   ⟹   XP_038953085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,184 - 65,563,186 (+)NCBI
mRatBN7.21862,943,046 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097158   ⟹   XP_038953086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,554 - 65,563,186 (+)NCBI
mRatBN7.21862,943,418 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097159   ⟹   XP_038953087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,216,857 - 65,563,186 (+)NCBI
mRatBN7.21862,941,739 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097160   ⟹   XP_038953088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,219,079 - 65,563,186 (+)NCBI
mRatBN7.21862,943,787 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097169   ⟹   XP_038953097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,216,857 - 65,563,186 (+)NCBI
mRatBN7.21862,941,759 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097170   ⟹   XP_038953098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,555 - 65,563,186 (+)NCBI
mRatBN7.21862,943,418 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097173   ⟹   XP_038953101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,385,902 - 65,563,186 (+)NCBI
mRatBN7.21863,116,364 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097174   ⟹   XP_038953102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,391,557 - 65,563,186 (+)NCBI
mRatBN7.21863,116,475 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097176   ⟹   XP_038953104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,391,557 - 65,563,186 (+)NCBI
mRatBN7.21863,116,475 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097177   ⟹   XP_038953105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,373,247 - 65,563,186 (+)NCBI
mRatBN7.21863,098,138 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097184   ⟹   XP_038953112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,393,151 - 65,563,186 (+)NCBI
mRatBN7.21863,118,042 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097185   ⟹   XP_038953113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,393,151 - 65,563,186 (+)NCBI
mRatBN7.21863,118,042 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097186   ⟹   XP_038953114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
mRatBN7.21863,192,711 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097187   ⟹   XP_038953115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
mRatBN7.21863,192,708 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097188   ⟹   XP_038953116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
mRatBN7.21863,192,708 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097189   ⟹   XP_038953117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
mRatBN7.21863,192,709 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097190   ⟹   XP_038953118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
mRatBN7.21863,192,706 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_039097191   ⟹   XP_038953119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,468,220 - 65,563,186 (+)NCBI
mRatBN7.21863,193,154 - 63,288,126 (+)NCBI
RefSeq Acc Id: XM_063277614   ⟹   XP_063133684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,554 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277615   ⟹   XP_063133685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,553 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277616   ⟹   XP_063133686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,553 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277617   ⟹   XP_063133687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,552 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277618   ⟹   XP_063133688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,552 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277619   ⟹   XP_063133689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,554 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277620   ⟹   XP_063133690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,553 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277621   ⟹   XP_063133691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,552 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277622   ⟹   XP_063133692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,218,204 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277623   ⟹   XP_063133693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,216,857 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277624   ⟹   XP_063133694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,216,845 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277625   ⟹   XP_063133695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,216,840 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277626   ⟹   XP_063133696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,216,857 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277627   ⟹   XP_063133697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,385,902 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277628   ⟹   XP_063133698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,393,145 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277629   ⟹   XP_063133699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,393,432 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277630   ⟹   XP_063133700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
RefSeq Acc Id: XM_063277631   ⟹   XP_063133701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81865,466,811 - 65,563,186 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001423993 (Get FASTA)   NCBI Sequence Viewer  
  NP_001423994 (Get FASTA)   NCBI Sequence Viewer  
  NP_001423995 (Get FASTA)   NCBI Sequence Viewer  
  NP_001423996 (Get FASTA)   NCBI Sequence Viewer  
  NP_001423997 (Get FASTA)   NCBI Sequence Viewer  
  NP_001423998 (Get FASTA)   NCBI Sequence Viewer  
  NP_001423999 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424000 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424003 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424006 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424008 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424012 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424014 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424016 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424018 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424020 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424022 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424025 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424026 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424027 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424028 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424029 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424030 (Get FASTA)   NCBI Sequence Viewer  
  NP_445821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953085 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953086 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953087 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953088 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953097 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953104 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953114 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953115 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953117 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953118 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953119 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133684 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133685 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133686 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133687 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133688 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133689 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133690 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133691 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133692 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133693 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133694 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133695 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133696 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133697 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133698 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133699 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133700 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133701 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21122 (Get FASTA)   NCBI Sequence Viewer  
  AAK26670 (Get FASTA)   NCBI Sequence Viewer  
  EDM14767 (Get FASTA)   NCBI Sequence Viewer  
  EDM14768 (Get FASTA)   NCBI Sequence Viewer  
  EDM14769 (Get FASTA)   NCBI Sequence Viewer  
  EDM14770 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020431
  ENSRNOP00000070021
  ENSRNOP00000070343
  ENSRNOP00000087117
  ENSRNOP00000096285
  ENSRNOP00000099053
  ENSRNOP00000106951
GenBank Protein Q62655 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445821   ⟸   NM_053369
- UniProtKB: A0A0G2JWU7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070343   ⟸   ENSRNOT00000080844
Ensembl Acc Id: ENSRNOP00000020431   ⟸   ENSRNOT00000020431
Ensembl Acc Id: ENSRNOP00000070021   ⟸   ENSRNOT00000081797
RefSeq Acc Id: XP_038953087   ⟸   XM_039097159
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953097   ⟸   XM_039097169
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038953085   ⟸   XM_039097157
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953086   ⟸   XM_039097158
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953098   ⟸   XM_039097170
- Peptide Label: isoform X10
- UniProtKB: Q99N33 (UniProtKB/Swiss-Prot),   Q62655 (UniProtKB/Swiss-Prot),   A6IXY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953088   ⟸   XM_039097160
- Peptide Label: isoform X1
- UniProtKB: F1LQ90 (UniProtKB/TrEMBL),   A6IXY6 (UniProtKB/TrEMBL),   A0A0G2JWU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953105   ⟸   XM_039097177
- Peptide Label: isoform X19
- UniProtKB: A0A0G2JXN5 (UniProtKB/TrEMBL),   A6IXY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953101   ⟸   XM_039097173
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038953102   ⟸   XM_039097174
- Peptide Label: isoform X16
- UniProtKB: Q99N33 (UniProtKB/Swiss-Prot),   Q62655 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038953104   ⟸   XM_039097176
- Peptide Label: isoform X18
- UniProtKB: Q99N33 (UniProtKB/Swiss-Prot),   Q62655 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038953112   ⟸   XM_039097184
- Peptide Label: isoform X19
- UniProtKB: A6IXY8 (UniProtKB/TrEMBL),   A0A0G2JXN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953113   ⟸   XM_039097185
- Peptide Label: isoform X19
- UniProtKB: A6IXY8 (UniProtKB/TrEMBL),   A0A0G2JXN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953118   ⟸   XM_039097190
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038953115   ⟸   XM_039097187
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038953116   ⟸   XM_039097188
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038953117   ⟸   XM_039097189
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038953114   ⟸   XM_039097186
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038953119   ⟸   XM_039097191
- Peptide Label: isoform X28
Ensembl Acc Id: ENSRNOP00000096285   ⟸   ENSRNOT00000114956
Ensembl Acc Id: ENSRNOP00000087117   ⟸   ENSRNOT00000118039
RefSeq Acc Id: XP_063133695   ⟸   XM_063277625
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063133694   ⟸   XM_063277624
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063133693   ⟸   XM_063277623
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063133696   ⟸   XM_063277626
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063133692   ⟸   XM_063277622
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063133691   ⟸   XM_063277621
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063133688   ⟸   XM_063277618
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JWU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133687   ⟸   XM_063277617
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JWU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133685   ⟸   XM_063277615
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JWU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133686   ⟸   XM_063277616
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133690   ⟸   XM_063277620
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063133689   ⟸   XM_063277619
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063133684   ⟸   XM_063277614
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JWU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133697   ⟸   XM_063277627
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063133698   ⟸   XM_063277628
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063133699   ⟸   XM_063277629
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063133700   ⟸   XM_063277630
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063133701   ⟸   XM_063277631
- Peptide Label: isoform X27
Ensembl Acc Id: ENSRNOP00000106951   ⟸   ENSRNOT00000126184
Ensembl Acc Id: ENSRNOP00000099053   ⟸   ENSRNOT00000144722
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62655-F1-model_v2 AlphaFold Q62655 1-589 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69271 AgrOrtholog
BioCyc Gene G2FUF-7088 BioCyc
Ensembl Genes ENSRNOG00000012405 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000020431 ENTREZGENE
  ENSRNOT00000080844 ENTREZGENE
  ENSRNOT00000081797 ENTREZGENE
  ENSRNOT00000114956 ENTREZGENE
  ENSRNOT00000118039 ENTREZGENE
  ENSRNOT00000126184 ENTREZGENE
  ENSRNOT00000144722 ENTREZGENE
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot
InterPro bHLH_dom UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot
  NeuroDiff_E-box_TFs UniProtKB/Swiss-Prot
KEGG Report rno:84382 UniProtKB/Swiss-Prot
NCBI Gene 84382 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot
  TRANSCRIPTION FACTOR 4 UniProtKB/Swiss-Prot
Pfam HLH UniProtKB/Swiss-Prot
PhenoGen Tcf4 PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012405 RatGTEx
SMART HLH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot
TIGR TC217074
UniProt A0A0G2JWU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JXN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A561 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L6G1_RAT UniProtKB/TrEMBL
  A0ABK0M0T8_RAT UniProtKB/TrEMBL
  A6IXY6 ENTREZGENE, UniProtKB/TrEMBL
  A6IXY7 ENTREZGENE, UniProtKB/TrEMBL
  A6IXY8 ENTREZGENE, UniProtKB/TrEMBL
  A6IXY9 ENTREZGENE, UniProtKB/TrEMBL
  F1LQ90 ENTREZGENE, UniProtKB/TrEMBL
  ITF2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q99N33 ENTREZGENE
UniProt Secondary Q99N33 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Tcf4  transcription factor 4      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains a basic helix-loop-helix motif 68862