Ier5 (immediate early response 5) - Rat Genome Database

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Gene: Ier5 (immediate early response 5) Rattus norvegicus
Analyze
Symbol: Ier5
Name: immediate early response 5
RGD ID: 69252
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including cellular response to heat; positive regulation of cellular response to heat; and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Predicted to be part of protein phosphatase type 2A complex. Orthologous to human IER5 (immediate early response 5); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81369,820,450 - 69,822,542 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1369,820,451 - 69,822,543 (-)EnsemblGRCr8
mRatBN7.21367,270,134 - 67,272,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1367,270,135 - 67,272,227 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1369,855,230 - 69,857,322 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01371,168,972 - 71,171,064 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01368,429,440 - 68,431,532 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01372,742,210 - 72,744,302 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1372,742,210 - 72,744,303 (-)Ensemblrn6Rnor6.0
Rnor_5.01377,677,760 - 77,679,852 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41370,058,818 - 70,060,910 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1367,145,754 - 67,147,846 (-)NCBICelera
RGSC_v3.11370,072,904 - 70,073,288 (-)NCBI
Cytogenetic Map13q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bromuconazole  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP)
disulfiram  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
elesclomol  (ISO)
Enterolactone  (ISO)
etoposide  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP)
nitrates  (ISO)
okadaic acid  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
testosterone  (EXP)
tetraphene  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification and cataloging of genes induced by long-lasting long-term potentiation in awake rats. Matsuo R, etal., J Neurochem 2000 Jun;74(6):2239-49.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:25816751   PMID:26496226  


Genomics

Comparative Map Data
Ier5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81369,820,450 - 69,822,542 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1369,820,451 - 69,822,543 (-)EnsemblGRCr8
mRatBN7.21367,270,134 - 67,272,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1367,270,135 - 67,272,227 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1369,855,230 - 69,857,322 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01371,168,972 - 71,171,064 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01368,429,440 - 68,431,532 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01372,742,210 - 72,744,302 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1372,742,210 - 72,744,303 (-)Ensemblrn6Rnor6.0
Rnor_5.01377,677,760 - 77,679,852 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41370,058,818 - 70,060,910 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1367,145,754 - 67,147,846 (-)NCBICelera
RGSC_v3.11370,072,904 - 70,073,288 (-)NCBI
Cytogenetic Map13q21NCBI
IER5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381181,088,700 - 181,092,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1181,088,700 - 181,092,900 (+)Ensemblhg38GRCh38
GRCh371181,057,836 - 181,062,036 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361179,324,261 - 179,326,602 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341177,789,294 - 177,791,629NCBI
Celera1154,164,524 - 154,166,865 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1152,288,717 - 152,291,058 (+)NCBIHuRef
CHM1_11182,480,274 - 182,482,615 (+)NCBICHM1_1
T2T-CHM13v2.01180,443,759 - 180,447,959 (+)NCBIT2T-CHM13v2.0
Ier5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,972,113 - 154,975,382 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,972,107 - 154,975,382 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381155,096,367 - 155,099,636 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,096,361 - 155,099,636 (-)Ensemblmm10GRCm38
MGSCv371156,943,497 - 156,946,766 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361156,859,744 - 156,861,854 (-)NCBIMGSCv36mm8
Celera1157,525,763 - 157,529,032 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map166.45NCBI
Ier5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540620,140,510 - 20,143,147 (+)NCBIChiLan1.0ChiLan1.0
IER5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2168,681,121 - 68,685,970 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1168,339,452 - 68,344,615 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,565,169 - 156,569,648 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,231,649 - 160,233,411 (+)NCBIPanPan1.1PanPan1.1panPan2
IER5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1714,554,184 - 14,557,929 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl714,555,992 - 14,556,930 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha714,133,473 - 14,135,654 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0714,282,236 - 14,284,424 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl714,282,094 - 14,286,826 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1714,193,262 - 14,195,449 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0714,299,866 - 14,302,048 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0714,423,635 - 14,425,831 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ier5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934490,456,183 - 90,458,357 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364818,301,297 - 8,305,082 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IER5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9122,633,781 - 122,635,948 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19122,633,781 - 122,635,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29134,670,062 - 134,672,230 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IER5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12548,314,925 - 48,317,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2548,315,871 - 48,316,854 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605549,696,909 - 49,699,233 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ier5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247711,318,498 - 1,319,418 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247711,318,097 - 1,320,394 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ier5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11034,517,917 - 34,520,030 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ier5
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:59
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000071937
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
UniSTS:496740  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21367,271,245 - 67,271,336 (+)MAPPERmRatBN7.2
Rnor_6.01372,743,322 - 72,743,412NCBIRnor6.0
Rnor_5.01377,678,872 - 77,678,962UniSTSRnor5.0
RGSC_v3.41370,059,930 - 70,060,020UniSTSRGSC3.4
Celera1367,146,866 - 67,146,956UniSTS
Cytogenetic Map13q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000077157   ⟹   ENSRNOP00000074441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1369,820,451 - 69,822,543 (-)Ensembl
mRatBN7.2 Ensembl1367,270,135 - 67,272,227 (-)Ensembl
Rnor_6.0 Ensembl1372,742,211 - 72,744,303 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093366   ⟹   ENSRNOP00000076350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1372,742,210 - 72,744,295 (-)Ensembl
RefSeq Acc Id: NM_001025137   ⟹   NP_001020308
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81369,820,450 - 69,822,542 (-)NCBI
mRatBN7.21367,270,134 - 67,272,226 (-)NCBI
Rnor_6.01372,742,210 - 72,744,302 (-)NCBI
Rnor_5.01377,677,760 - 77,679,852 (-)NCBI
RGSC_v3.41370,058,818 - 70,060,910 (-)RGD
Celera1367,145,754 - 67,147,846 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001020308 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91181 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020308   ⟸   NM_001025137
- UniProtKB: A6ICY3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074441   ⟸   ENSRNOT00000077157
Ensembl Acc Id: ENSRNOP00000076350   ⟸   ENSRNOT00000093366

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q6P5-F1-model_v2 AlphaFold A0A1W2Q6P5 1-308 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698910
Promoter ID:EPDNEW_R9428
Type:single initiation site
Name:Ier5_1
Description:immediate early response 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01372,744,317 - 72,744,377EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69252 AgrOrtholog
BioCyc Gene G2FUF-17852 BioCyc
Ensembl Genes ENSRNOG00000059406 Ensembl
IMAGE_CLONE IMAGE:7326120 IMAGE-MGC_LOAD
InterPro IER UniProtKB/TrEMBL
MGC_CLONE MGC:108821 IMAGE-MGC_LOAD
NCBI Gene Ier5 ENTREZGENE
PANTHER PTHR15895 UniProtKB/TrEMBL
Pfam IER UniProtKB/TrEMBL
PhenoGen Ier5 PhenoGen
RatGTEx ENSRNOG00000059406 RatGTEx
UniProt A6ICY3 ENTREZGENE, UniProtKB/TrEMBL
  Q5BK73_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ier5  immediate early response 5      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process functionally involved in long-lasting long-term potentiation in the hippocampus of freely moving rats 68745
gene_regulation up-regulated 75 minutes after LTP induction 68745
gene_regulation regulation is NMDA receptor-dependent 68745