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Gene: Smpx (small muscle protein, X-linked) Rattus norvegicus

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Symbol:

Smpx

Name:

small muscle protein, X-linked

RGD ID:

69233

Description:

Predicted to be located in contractile muscle fiber and nucleus. Predicted to be active in M band; costamere; and muscle tendon junction. Human ortholog(s) of this gene implicated in X-linked deafness 4. Orthologous to human SMPX (small muscle protein X-linked); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

small muscular protein; stretch-responsive skeletal muscle protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SMPX (small muscle protein X-linked)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Smpx (small muscle protein, X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Smpx (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SMPX (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SMPX (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Smpx (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SMPX (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SMPX (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Smpx (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Smpx (small muscle protein X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SMPX (small muscle protein X-linked)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Smpx (small muscle protein, X-linked)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	smpx (small muscle protein X-linked)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	smpx	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	smpx	Alliance	DIOPT (OMA\|OrthoFinder)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	41,049,354 - 41,107,323 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	41,049,356 - 41,107,137 (-)	Ensembl				GRCr8
mRatBN7.2	X	37,233,209 - 37,292,266 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	37,234,294 - 37,276,708 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	38,423,422 - 38,481,226 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	41,890,629 - 41,948,431 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	39,575,342 - 39,633,141 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	40,029,200 - 40,086,870 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	40,030,248 - 40,086,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	40,340,762 - 40,397,380 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	58,521,059 - 58,581,070 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	37,866,028 - 37,923,593 (-)	NCBI		Celera
RGSC_v3.1	X	58,574,529 - 58,634,539 (-)	NCBI
Cytogenetic Map	X	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Distal Myopathy 7 (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

X-linked deafness 4 (ISO,ISS)

X-linked nonsyndromic deafness (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

alpha-hexachlorocyclohexane (EXP)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cantharidin (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (EXP)

copper(II) sulfate (ISO)

curcumin (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

folic acid (ISO)

gentamycin (EXP)

glyphosate (EXP)

Heliotrine (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

morphine (EXP)

Muraglitazar (EXP)

nitrofen (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (ISO)

PCB138 (ISO)

pentanal (ISO)

perfluorooctanoic acid (EXP)

pioglitazone (ISO)

SB 431542 (ISO)

senecionine (EXP)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

Tesaglitazar (EXP)

thiabendazole (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

troglitazone (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

contractile muscle fiber (ISO)

costamere (IBA,ISO)

cytoplasm (ISO)

M band (IBA,ISO)

muscle tendon junction (IBA,ISO)

nucleus (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	Identification, mapping, and genomic structure of a novel X-chromosomal human gene (SMPX) encoding a small muscular protein.	Patzak D, etal., Hum Genet 1999 Nov;105(5):506-12.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:11381084	PMID:11401441

Genomics

Comparative Map Data

Smpx
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	41,049,354 - 41,107,323 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	41,049,356 - 41,107,137 (-)	Ensembl				GRCr8
mRatBN7.2	X	37,233,209 - 37,292,266 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	37,234,294 - 37,276,708 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	38,423,422 - 38,481,226 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	41,890,629 - 41,948,431 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	39,575,342 - 39,633,141 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	40,029,200 - 40,086,870 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	40,030,248 - 40,086,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	40,340,762 - 40,397,380 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	58,521,059 - 58,581,070 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	37,866,028 - 37,923,593 (-)	NCBI		Celera
RGSC_v3.1	X	58,574,529 - 58,634,539 (-)	NCBI
Cytogenetic Map	X	q21	NCBI

SMPX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	21,705,978 - 21,758,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	21,705,978 - 21,758,176 (-)	Ensembl			hg38	GRCh38
GRCh37	X	21,724,096 - 21,776,234 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	21,634,012 - 21,686,151 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	21,483,747 - 21,535,887	NCBI
Celera	X	25,845,385 - 25,897,515 (-)	NCBI		Celera
Cytogenetic Map	X	p22.12	NCBI
HuRef	X	19,465,725 - 19,517,905 (-)	NCBI		HuRef
CHM1_1	X	21,754,516 - 21,806,704 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	21,289,285 - 21,341,420 (-)	NCBI		T2T-CHM13v2.0

Smpx
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	156,481,969 - 156,535,587 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	156,481,906 - 156,535,587 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	157,698,973 - 157,752,591 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	157,698,910 - 157,752,591 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	154,137,050 - 154,190,521 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	153,043,223 - 153,096,694 (+)	NCBI		MGSCv36	mm8
Celera	X	140,952,572 - 141,005,978 (+)	NCBI		Celera
Cytogenetic Map	X	F4	NCBI
cM Map	X	72.67	NCBI

Smpx
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955509	2,067,351 - 2,093,732 (-)	Ensembl
ChiLan1.0	NW_004955509	2,043,854 - 2,185,294 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMPX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	23,514,798 - 23,567,082 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	23,518,188 - 23,570,472 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	14,336,846 - 14,389,125 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	21,719,905 - 21,744,977 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	21,719,905 - 21,744,977 (-)	Ensembl			panPan2	panpan1.1

SMPX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	17,520,564 - 17,578,453 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	17,520,644 - 17,573,614 (-)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	X	17,480,026 - 17,537,925 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	17,480,106 - 17,533,083 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	17,514,285 - 17,572,159 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	17,535,989 - 17,593,898 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	17,596,164 - 17,654,098 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Smpx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	10,498,541 - 10,554,663 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936624	2,603,171 - 2,659,364 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936624	2,603,210 - 2,659,368 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMPX
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	17,889,030 - 17,938,293 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	17,889,030 - 17,938,206 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Pig Cytomap	X	p24	NCBI

SMPX
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	20,170,996 - 20,234,693 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	20,172,347 - 20,227,028 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	22,040,729 - 22,068,492 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smpx
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	6,655,549 - 6,679,832 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624829	6,633,027 - 6,679,508 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Smpx
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	35,378,383 - 35,426,425 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Smpx
265 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	260
Count of miRNA genes:	181
Interacting mature miRNAs:	207
Transcripts:	ENSRNOT00000010027
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	24470360	44931007	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	24470360	45082063	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	61	88	67	66	35	23	35	6	256	117	10	67	81	82	31	5	5

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005498074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF364071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010027 ⟹ ENSRNOP00000010027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	41,049,356 - 41,091,771 (-)	Ensembl
mRatBN7.2 Ensembl	X	37,234,294 - 37,276,708 (-)	Ensembl
Rnor_6.0 Ensembl	X	40,030,248 - 40,086,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128801 ⟹ ENSRNOP00000109885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	41,049,356 - 41,107,137 (-)	Ensembl

RefSeq Acc Id:

NM_053395 ⟹ NP_445847

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	41,049,354 - 41,107,137 (-)	NCBI
mRatBN7.2	X	37,234,292 - 37,292,080 (-)	NCBI
Rnor_6.0	X	40,030,256 - 40,086,870 (-)	NCBI
Rnor_5.0	X	40,340,762 - 40,397,380 (-)	NCBI
RGSC_v3.4	X	58,521,059 - 58,581,070 (-)	RGD
Celera	X	37,866,028 - 37,923,593 (-)	RGD

Sequence:

show sequence

GGACCGGAGAGGGACAGAGCACTCCAGCTATTCCAGCCACATGAAAAGCACTGGAATTGAGATC
TCAGCTCAGAGGACACCGGGAGTTCCTTCTACCCTGTAAAGCGTTTTCTGTTTTTGCACCTGGC
TGCCTAGGACTGTCCTCAGGCAGTAAACAAATCCAGAGAGCAGGTATAAGACCTCTTGAACATG
TCGAAGCAGCCAATTTCCAACGTCAGATCCATTCAGGCCAATATTAATATTCCAATGGGAGCCT
TTCGTCCGGGAGCTGGGCAGCCTCCCAGAAGGAAAGAGAGTACCCCTGGAACTGCGGAGGGAGC
ACCTGCTACTCCCGAGGAAAAGAAGCCAGTTCCTGGAATGAAGAAATTCCCAGGACCCGTCGTC
AACCTGTCTGAGATCCAAAACGTTAAAAGTGAACTAAAATACGTCCCCAAAGGTGAACAGTAGT
TCAAAGGGGTCAGAAGGCTTGACGTGCTTTCTCAATGGAAAAAACAATGGGTTGAAATAAACAA
CTTCATGAGAATTTTATATATTTGTATGATGATCACAAACTTCCTGAATGCCCAAGACTCTAGC
AAAAAATATCCTGTTTGTACATTTATATTTCTTCCTTCTACTTGGCTGCATTTCTCACTTTAGC
TACATTTTTGGCACCTTGCAGAGCAAATGAGCACATGAATTTACCACCTGGGGAGTGTGGTTTT
GAGGAGAGATGTGATTTTTATGGAGGGGGGTACAGCAATGTGCATGCAGTGATTTTGATATTAA
GTACTTTTAAGTTACTTCCCACAGTCTTTTGGTCAATATTTGAAATGTCTTCTTCACCTTTTAA
ATGATCTCAATTAACTTTTTATGAGTTGAAATAAATATTTGAGTAAATGTAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256945 ⟹ XP_006257007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	41,049,354 - 41,104,023 (-)	NCBI
mRatBN7.2	X	37,234,288 - 37,288,686 (-)	NCBI
Rnor_6.0	X	40,029,200 - 40,083,475 (-)	NCBI
Rnor_5.0	X	40,340,762 - 40,397,380 (-)	NCBI

Sequence:

show sequence

TGGGGTGGTTAGGTGGGACGCCTAGGAAGATCAAACGATCCGGTTCTTCAAAGAGTCCGCAAAC
CTCTTCAAAGTTTGCCAGGAGAAGAGATATTCACACAGCTGAGAGGGTACTCCAAAAGCTGAGC
CACCGTCTTCAGGTATAAGACCTCTTGAACATGTCGAAGCAGCCAATTTCCAACGTCAGATCCA
TTCAGGCCAATATTAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCAGCCTCCCAGAAG
GAAAGAGAGTACCCCTGGAACTGCGGAGGGAGCACCTGCTACTCCCGAGGAAAAGAAGCCAGTT
CCTGGAATGAAGAAATTCCCAGGACCCGTCGTCAACCTGTCTGAGATCCAAAACGTTAAAAGTG
AACTAAAATACGTCCCCAAAGGTGAACAGTAGTTCAAAGGGGTCAGAAGGCTTGACGTGCTTTC
TCAATGGAAAAAACAATGGGTTGAAATAAACAACTTCATGAGAATTTTATATATTTGTATGATG
ATCACAAACTTCCTGAATGCCCAAGACTCTAGCAAAAAATATCCTGTTTGTACATTTATATTTC
TTCCTTCTACTTGGCTGCATTTCTCACTTTAGCTACATTTTTGGCACCTTGCAGAGCAAATGAG
CACATGAATTTACCACCTGGGGAGTGTGGTTTTGAGGAGAGATGTGATTTTTATGGAGGGGGGT
ACAGCAATGTGCATGCAGTGATTTTGATATTAAGTACTTTTAAGTTACTTCCCACAGTCTTTTG
GTCAATATTTGAAATGTCTTCTTCACCTTTTAAATGATCTCAATTAACTTTTTATGAGTTGAAA
TAAATATTTGAGTAAATGTAACATATAAATCTACACCAAATTAATTTTCCTACCTTCAGATAGC
TACATATTCTGTAAAGTAAAGAAAACTATGAGGTACCACGGAGTCAAATCCCATATTGCCTATG
TAGGGACTTATGAGGTACCATGGAAAACACTATGACTGGCTGATCACTGCATATGAACTTAAAT
ATTGCACGAGTAATTTTGTACTGATGTTATTTCCCATCCGAGGATGACCTGCTCGTTGAGTGCA
TTTTAGTTCCATGAAGGGTCAGAAATCTTATATTCAGGATGAAACAGAGTTCATTTTAAGACCC
GGTAAAGGGTGATGGGAACAGAAGAGAGGGGACGATCACATGATAGCTGTGCAAAGGGAGCAAA
CTGTATATCCTGCCAAGATGGAGATTTATCCAGACAGGCCTGGAATACCAACACTTGTAAGCTG
AAGCAGTAGGATCACTAGGTCAAAGCTAACCTGGGATACATATGGAAGCCCTATACCAAATAGA
GGGGTAGGGGAAGAAGGAGGGGATAACTTTAATTAATACCTACTATTATAACCCAAGAAGAAGC
ATATGAGCAACCTCACAGTCAGTGATGGACCAGATTATCAAACAGCGGACTATGTGAAAACCAA
ATGTGTCTCTCTACCCTGCATGAACAGATTTTAGCAGTGTTTCTGGAGCTGAATAATTGCTATA
GTTGTTTCAGAGAGAGTCACTGCCTATGCACTTCTGAATGTTACAAGTGGAAGAGACTCTTGCA
TTTCCATTCTGTAGCAGTTGTTTCCCGAAAGAAAGATTGGCTGGTTGTCTTTTTGGCTCCCACC
TACCTTGGTGTTTTGCCAGGCTGTGGTCTAGCTTGGTCATCTACATCTGCTATACATATACCAG
GCAGGGAACATCAAACTGTGCCAGCCTATCTTCTGCAGTCACAGCAGGTTCTAAACGACATGTG
ACTGTGATGTCTCAGGCTGTCTTACTTCTTCCTCTCTGGGATGGTTGGCTAGGGCTATAAAATT
TACCTCGGTGCTCGCTTTGTTTAAATATAGATTATCTATGTTCTGATTCAAAA

hide sequence

RefSeq Acc Id:

XR_005498074

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	41,049,354 - 41,107,323 (-)	NCBI
mRatBN7.2	X	37,233,209 - 37,292,266 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_445847	(Get FASTA)	NCBI Sequence Viewer
	XP_006257007	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK50399	(Get FASTA)	NCBI Sequence Viewer
	EDL96116	(Get FASTA)	NCBI Sequence Viewer
	EDL96117	(Get FASTA)	NCBI Sequence Viewer
	EDL96118	(Get FASTA)	NCBI Sequence Viewer
	EDL96119	(Get FASTA)	NCBI Sequence Viewer
	EDL96120	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000109885
GenBank Protein	Q925F0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_445847 ⟸ NM_053395
- UniProtKB:	Q925F0 (UniProtKB/Swiss-Prot), A6IPP6 (UniProtKB/TrEMBL), A0A8L2Q474 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKQPISNVRSIQANINIPMGAFRPGAGQPPRRKESTPGTAEGAPATPEEKKPVPGMKKFPGPV VNLSEIQNVKSELKYVPKGEQ hide sequence

RefSeq Acc Id:	XP_006257007 ⟸ XM_006256945
- Peptide Label:	isoform X1
- UniProtKB:	Q925F0 (UniProtKB/Swiss-Prot), A6IPP6 (UniProtKB/TrEMBL), A0A8L2Q474 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKQPISNVRSIQANINIPMGAFRPGAGQPPRRKESTPGTAEGAPATPEEKKPVPGMKKFPGPV VNLSEIQNVKSELKYVPKGEQ hide sequence

Ensembl Acc Id:

ENSRNOP00000010027 ⟸ ENSRNOT00000010027

Ensembl Acc Id:

ENSRNOP00000109885 ⟸ ENSRNOT00000128801

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q925F0-F1-model_v2	AlphaFold	Q925F0	1-85	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701814

Promoter ID:

EPDNEW_R12338

Type:

initiation region

Name:

Smpx_1

Description:

small muscle protein, X-linked

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	40,086,884 - 40,086,944	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69233	AgrOrtholog
BioCyc Gene	G2FUF-2468	BioCyc
Ensembl Genes	ENSRNOG00000007495	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000128801	ENTREZGENE
InterPro	Chisel	UniProtKB/Swiss-Prot
KEGG Report	rno:84416	UniProtKB/Swiss-Prot
NCBI Gene	84416	ENTREZGENE
PANTHER	PTHR17416	UniProtKB/Swiss-Prot
	SMALL MUSCULAR PROTEIN	UniProtKB/Swiss-Prot
Pfam	Chisel	UniProtKB/Swiss-Prot
PhenoGen	Smpx	PhenoGen
RatGTEx	ENSRNOG00000007495	RatGTEx
TIGR	TC204506
UniProt	A0A8L2Q474	ENTREZGENE, UniProtKB/TrEMBL
	A6IPP6	ENTREZGENE, UniProtKB/TrEMBL
	A6IPP7_RAT	UniProtKB/TrEMBL
	Q925F0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Smpx	small muscle protein, X-linked			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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