Bcam (basal cell adhesion molecule (Lutheran blood group)) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Bcam (basal cell adhesion molecule (Lutheran blood group)) Rattus norvegicus
Analyze
Symbol: Bcam
Name: basal cell adhesion molecule (Lutheran blood group)
RGD ID: 68378
Description: Predicted to enable laminin binding activity and laminin receptor activity. Predicted to be involved in angiogenesis and cell-matrix adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be located in cell surface. Predicted to be active in plasma membrane. Orthologous to human BCAM (basal cell adhesion molecule (Lutheran blood group)); INTERACTS WITH 1,1-dichloroethene; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: B-CAM cell surface glycoprotein; basal cell adhesion molecule; Lu; lutheran antigen; Lutheran blood group (Auberger b antigen included)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,542,971 - 88,557,358 (-)NCBIGRCr8
mRatBN7.2179,415,016 - 79,429,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,415,017 - 79,429,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,809,588 - 84,823,988 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,361,117 - 93,375,464 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,564,702 - 86,579,102 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,674,463 - 80,689,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,674,444 - 80,689,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,939,821 - 81,954,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,067,352 - 79,081,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,145,463 - 79,159,850 (-)NCBI
Celera173,873,493 - 73,887,880 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 96 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BcamRat1,1-dichloroethene increases expressionEXP 6480464vinylidene chloride results in increased expression of BCAM proteinCTDPMID:14565772
BcamRat1,2-dimethylhydrazine increases expressionISOBcam (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of BCAM mRNACTDPMID:22206623
BcamRat1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine increases expressionEXP 6480464chlorcyclizine results in increased expression of BCAM mRNACTDPMID:21058326
BcamRat17beta-estradiol multiple interactionsISOBCAM (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of BCAM mRNA and [Estradiol co-treated with TGFB1 protein] results in decreased expression of BCAM mRNACTDPMID:19619570 and PMID:30165855
BcamRat17beta-estradiol decreases expressionISOBCAM (Homo sapiens)6480464Estradiol results in decreased expression of BCAM mRNACTDPMID:19619570 and PMID:21185374
BcamRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOBCAM (Homo sapiens)64804642 more ...CTDPMID:31675489
BcamRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOBCAM (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of BCAM mRNACTDPMID:19619570
BcamRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of BCAM mRNACTDPMID:33387578
BcamRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of BCAM mRNACTDPMID:34747641
BcamRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOBcam (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of BCAM mRNACTDPMID:21570461
BcamRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOBcam (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of BCAM mRNACTDPMID:21354282 and PMID:33956508
BcamRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOBCAM (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of BCAM mRNACTDPMID:19619570
BcamRat2,4,6-tribromophenol increases expressionISOBCAM (Homo sapiens)64804642 more ...CTDPMID:31675489
BcamRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOBcam (Mus musculus)64804642 more ...CTDPMID:38648751
BcamRat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:23196670
BcamRat3,3',4,4',5-pentachlorobiphenyl decreases expressionISOBCAM (Homo sapiens)64804643 more ...CTDPMID:29947894
BcamRat3,3',5,5'-tetrabromobisphenol A increases expressionISOBCAM (Homo sapiens)6480464tetrabromobisphenol A results in increased expression of BCAM proteinCTDPMID:31675489
BcamRat4,4'-diaminodiphenylmethane increases expressionISOBcam (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of BCAM mRNACTDPMID:18648102
BcamRat4,4'-sulfonyldiphenol increases expressionISOBcam (Mus musculus)6480464bisphenol S results in increased expression of BCAM mRNACTDPMID:30951980
BcamRat4,4'-sulfonyldiphenol increases methylationISOBcam (Mus musculus)6480464bisphenol S results in increased methylation of BCAM exonCTDPMID:33297965

1 to 20 of 96 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BcamRatangiogenesis involved_inIBAPANTHER:PTN000748632 and UniProtKB:P431211600115GO_REF:0000033GO_CentralGO_REF:0000033
BcamRatcell adhesion  NAS 724415 RGD 
BcamRatcell adhesion involved_inIEAUniProtKB:P50895 and ensembl:ENSP000002702331600115GO_REF:0000107EnsemblGO_REF:0000107
BcamRatcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
BcamRatcell adhesion acts_upstream_of_or_withinISOBcam (Mus musculus)1624291 PMID:10630290RGDPMID:10630290
BcamRatcell adhesion involved_inISOBCAM (Homo sapiens)1624291 PMID:15975931RGDPMID:15975931
BcamRatcell-matrix adhesion involved_inISOBCAM (Homo sapiens)1624291 PMID:16236823RGDPMID:16236823
BcamRatcell-matrix adhesion involved_inIEAUniProtKB:P50895 and ensembl:ENSP000002702331600115GO_REF:0000107EnsemblGO_REF:0000107

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BcamRatcell surface located_inISOBcam (Mus musculus)1624291 PMID:11507772RGDPMID:11507772
BcamRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
BcamRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
BcamRatplasma membrane is_active_inISOBCAM (Homo sapiens)1624291 PMID:31413112RGDPMID:31413112
BcamRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
BcamRatplasma membrane located_inISOBcam (Mus musculus)1624291 PMID:10630290RGDPMID:10630290
BcamRatplasma membrane is_active_inIEAUniProtKB:P50895 and ensembl:ENSP000002702331600115GO_REF:0000107EnsemblGO_REF:0000107
BcamRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
BcamRatplasma membrane is_active_inIBAMGI:1313266 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 9 of 9 rows

Molecular Function

  


1 to 9 of 9 rows
#
Reference Title
Reference Citation
1. Characterization of the laminin binding domains of the Lutheran blood group glycoprotein. El Nemer W, etal., J Biol Chem 2001 Jun 29;276(26):23757-62.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
1 to 9 of 9 rows
PMID:10630290   PMID:11507772   PMID:16236823   PMID:19056867   PMID:23376485   PMID:24223164   PMID:24453976   PMID:27068509   PMID:27559042   PMID:29476059   PMID:36252138  



Bcam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,542,971 - 88,557,358 (-)NCBIGRCr8
mRatBN7.2179,415,016 - 79,429,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,415,017 - 79,429,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,809,588 - 84,823,988 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,361,117 - 93,375,464 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,564,702 - 86,579,102 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,674,463 - 80,689,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,674,444 - 80,689,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,939,821 - 81,954,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,067,352 - 79,081,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,145,463 - 79,159,850 (-)NCBI
Celera173,873,493 - 73,887,880 (-)NCBICelera
Cytogenetic Map1q21NCBI
BCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,809,059 - 44,821,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,809,071 - 44,821,421 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,312,316 - 45,324,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,004,178 - 50,016,518 (+)NCBINCBI36Build 36hg18NCBI36
Build 341950,004,216 - 50,016,511NCBI
Celera1942,115,754 - 42,128,094 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1941,743,446 - 41,755,786 (+)NCBIHuRef
CHM1_11945,315,022 - 45,327,384 (+)NCBICHM1_1
T2T-CHM13v2.01947,633,808 - 47,646,153 (+)NCBIT2T-CHM13v2.0
Bcam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,490,063 - 19,504,457 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,490,056 - 19,504,941 (-)EnsemblGRCm39 Ensembl
GRCm38719,756,138 - 19,770,532 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,756,131 - 19,771,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,341,487 - 20,355,881 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,914,661 - 18,928,997 (-)NCBIMGSCv36mm8
Celera717,162,318 - 17,178,338 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Bcam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,942,583 - 1,950,372 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,943,445 - 1,950,810 (+)NCBIChiLan1.0ChiLan1.0
BCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,968,108 - 50,980,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,840,067 - 52,852,703 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,756,492 - 41,769,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,361,780 - 50,374,600 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,361,780 - 50,374,600 (+)Ensemblpanpan1.1panPan2
BCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,575,883 - 110,585,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,575,924 - 110,585,035 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,056,830 - 110,066,172 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,138,698 - 111,148,041 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,137,660 - 111,148,040 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,780,182 - 110,789,389 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,415,767 - 110,425,111 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,285,027 - 111,294,370 (-)NCBIUU_Cfam_GSD_1.0
Bcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,109,872 - 17,118,596 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,457,174 - 1,467,848 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,451,609 - 1,465,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,298,806 - 51,310,528 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,298,743 - 51,310,543 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,198,260 - 47,210,371 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,288,507 - 38,301,587 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,288,537 - 38,301,634 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,855,578 - 17,868,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,695,698 - 1,708,345 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,696,078 - 1,705,260 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Bcam
91 total Variants

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:77
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000045574
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat

1 to 10 of 47 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000045574   ⟹   ENSRNOP00000047809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,415,017 - 79,429,403 (-)Ensembl
Rnor_6.0 Ensembl180,674,444 - 80,689,171 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098572   ⟹   ENSRNOP00000089177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,415,547 - 79,427,687 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102437   ⟹   ENSRNOP00000085184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,415,017 - 79,427,860 (-)Ensembl
RefSeq Acc Id: NM_031752   ⟹   NP_113940
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,542,971 - 88,557,358 (-)NCBI
mRatBN7.2179,415,016 - 79,429,403 (-)NCBI
Rnor_6.0180,674,463 - 80,689,122 (-)NCBI
Rnor_5.0181,939,821 - 81,954,480 (-)NCBI
RGSC_v3.4179,067,352 - 79,081,739 (-)RGD
Celera173,873,493 - 73,887,880 (-)RGD
Sequence:
Protein RefSeqs NP_113940 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH72479 (Get FASTA)   NCBI Sequence Viewer  
  BAB16052 (Get FASTA)   NCBI Sequence Viewer  
  EDM08137 (Get FASTA)   NCBI Sequence Viewer  
  EDM08138 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000047809
  ENSRNOP00000047809.3
GenBank Protein Q9ESS6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113940   ⟸   NM_031752
- Peptide Label: precursor
- UniProtKB: Q9ESS6 (UniProtKB/Swiss-Prot),   A0A8I6A1Q0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047809   ⟸   ENSRNOT00000045574
Ensembl Acc Id: ENSRNOP00000089177   ⟸   ENSRNOT00000098572
Ensembl Acc Id: ENSRNOP00000085184   ⟸   ENSRNOT00000102437
Ig-like   Ig-like C2-type   Ig-like V-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q9ESS6-F1-model_v2 AlphaFold Q9ESS6 1-624 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689782
Promoter ID:EPDNEW_R307
Type:multiple initiation site
Name:Bcam_1
Description:basal cell adhesion molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,689,138 - 80,689,198EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60485 BioCyc
Ensembl Genes ENSRNOG00000029399 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000045574 ENTREZGENE
  ENSRNOT00000045574.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7104047 IMAGE-MGC_LOAD
InterPro CD80_C2-set UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Surface_Rcpt/Adhesion_Mol UniProtKB/Swiss-Prot
KEGG Report rno:78958 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91621 IMAGE-MGC_LOAD
NCBI Gene 78958 ENTREZGENE
PANTHER BASAL CELL ADHESION MOLECULE UniProtKB/Swiss-Prot
  CELL SURFACE GLYCOPROTEIN MUC18-RELATED UniProtKB/Swiss-Prot
Pfam C2-set_2 UniProtKB/Swiss-Prot
  Ig_2 UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
PhenoGen Bcam PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000029399 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
TIGR TC229277
UniProt A0A8I6A1Q0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB76_RAT UniProtKB/TrEMBL
  A6J8U6_RAT UniProtKB/TrEMBL
  BCAM_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-14 Bcam  basal cell adhesion molecule (Lutheran blood group)  Bcam  basal cell adhesion molecule  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Bcam  basal cell adhesion molecule  Lu  Lutheran blood group (Auberger b antigen included)  Symbol and Name updated 1299863 APPROVED
2002-06-10 Lu  Lutheran blood group (Auberger b antigen included)      Name updated 70584 APPROVED

Note Type Note Reference
gene_product member of the Ig superfamily 724415