Bcam (basal cell adhesion molecule (Lutheran blood group)) - Rat Genome Database

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Gene: Bcam (basal cell adhesion molecule (Lutheran blood group)) Rattus norvegicus
Analyze
Symbol: Bcam
Name: basal cell adhesion molecule (Lutheran blood group)
RGD ID: 68378
Description: Predicted to enable laminin binding activity and laminin receptor activity. Predicted to be involved in angiogenesis and cell-matrix adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be located in cell surface. Predicted to be active in plasma membrane. Orthologous to human BCAM (basal cell adhesion molecule (Lutheran blood group)); INTERACTS WITH 1,1-dichloroethene; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: B-CAM cell surface glycoprotein; basal cell adhesion molecule; Lu; lutheran antigen; Lutheran blood group (Auberger b antigen included)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,542,971 - 88,557,358 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,542,972 - 88,557,888 (-)EnsemblGRCr8
mRatBN7.2179,415,016 - 79,429,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,415,017 - 79,429,403 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx184,809,588 - 84,823,988 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,361,117 - 93,375,464 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,564,702 - 86,579,102 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,674,463 - 80,689,122 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,674,444 - 80,689,171 (-)Ensemblrn6Rnor6.0
Rnor_5.0181,939,821 - 81,954,480 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4179,067,352 - 79,081,739 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera173,873,493 - 73,887,880 (-)NCBICelera
RGSC_v3.1179,145,463 - 79,159,850 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-vinylcyclohexene dioxide  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
doxorubicin  (ISO)
drometrizole  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
hydrogen cyanide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
ochratoxin A  (EXP,ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sulindac sulfide  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP,ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (IBA)
cell adhesion  (IBA,IEA,ISO,NAS)
cell-matrix adhesion  (IEA,ISO)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Characterization of the laminin binding domains of the Lutheran blood group glycoprotein. El Nemer W, etal., J Biol Chem 2001 Jun 29;276(26):23757-62.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:10630290   PMID:11507772   PMID:16236823   PMID:19056867   PMID:23376485   PMID:24223164   PMID:24453976   PMID:27068509   PMID:27559042   PMID:29476059   PMID:36252138  


Genomics

Comparative Map Data
Bcam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,542,971 - 88,557,358 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,542,972 - 88,557,888 (-)EnsemblGRCr8
mRatBN7.2179,415,016 - 79,429,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,415,017 - 79,429,403 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx184,809,588 - 84,823,988 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,361,117 - 93,375,464 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,564,702 - 86,579,102 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,674,463 - 80,689,122 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,674,444 - 80,689,171 (-)Ensemblrn6Rnor6.0
Rnor_5.0181,939,821 - 81,954,480 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4179,067,352 - 79,081,739 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera173,873,493 - 73,887,880 (-)NCBICelera
RGSC_v3.1179,145,463 - 79,159,850 (-)NCBI
Cytogenetic Map1q21NCBI
BCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,809,059 - 44,821,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,809,070 - 44,821,421 (+)Ensemblhg38GRCh38
GRCh371945,312,316 - 45,324,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,004,178 - 50,016,518 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341950,004,216 - 50,016,511NCBI
Celera1942,115,754 - 42,128,094 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1941,743,446 - 41,755,786 (+)NCBIHuRef
CHM1_11945,315,022 - 45,327,384 (+)NCBICHM1_1
T2T-CHM13v2.01947,633,808 - 47,646,153 (+)NCBIT2T-CHM13v2.0
Bcam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,490,063 - 19,504,457 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,490,056 - 19,504,941 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38719,756,138 - 19,770,532 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,756,131 - 19,771,016 (-)Ensemblmm10GRCm38
MGSCv37720,341,487 - 20,355,881 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36718,914,661 - 18,928,997 (-)NCBIMGSCv36mm8
Celera717,162,318 - 17,178,338 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Bcam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,942,583 - 1,950,372 (+)Ensembl
ChiLan1.0NW_0049555551,943,445 - 1,950,810 (+)NCBIChiLan1.0ChiLan1.0
BCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,968,108 - 50,980,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,840,067 - 52,852,703 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,756,492 - 41,769,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,361,780 - 50,374,600 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,361,780 - 50,374,600 (+)EnsemblpanPan2panpan1.1
BCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,575,883 - 110,585,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,575,924 - 110,585,035 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1110,056,830 - 110,066,172 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01111,138,698 - 111,148,041 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,137,660 - 111,148,040 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,780,182 - 110,789,389 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,415,767 - 110,425,111 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,285,027 - 111,294,370 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,109,872 - 17,118,596 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,457,174 - 1,467,848 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,451,609 - 1,465,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,298,806 - 51,310,528 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1651,298,743 - 51,310,543 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,198,260 - 47,210,371 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,288,507 - 38,301,587 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,288,537 - 38,301,634 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607317,855,578 - 17,868,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,695,698 - 1,708,345 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249071,696,078 - 1,705,260 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bcam
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12170,846,265 - 170,860,586 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bcam
58 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:77
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000045574
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 73 59 6 337 173 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000045574   ⟹   ENSRNOP00000047809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,542,972 - 88,557,888 (-)Ensembl
mRatBN7.2 Ensembl179,415,017 - 79,429,403 (-)Ensembl
Rnor_6.0 Ensembl180,674,444 - 80,689,171 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098572   ⟹   ENSRNOP00000089177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,543,502 - 88,555,642 (-)Ensembl
mRatBN7.2 Ensembl179,415,547 - 79,427,687 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102437   ⟹   ENSRNOP00000085184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,415,017 - 79,427,860 (-)Ensembl
RefSeq Acc Id: NM_031752   ⟹   NP_113940
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,542,971 - 88,557,358 (-)NCBI
mRatBN7.2179,415,016 - 79,429,403 (-)NCBI
Rnor_6.0180,674,463 - 80,689,122 (-)NCBI
Rnor_5.0181,939,821 - 81,954,480 (-)NCBI
RGSC_v3.4179,067,352 - 79,081,739 (-)RGD
Celera173,873,493 - 73,887,880 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_113940 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH72479 (Get FASTA)   NCBI Sequence Viewer  
  BAB16052 (Get FASTA)   NCBI Sequence Viewer  
  EDM08137 (Get FASTA)   NCBI Sequence Viewer  
  EDM08138 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000047809
  ENSRNOP00000047809.3
GenBank Protein Q9ESS6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113940   ⟸   NM_031752
- Peptide Label: precursor
- UniProtKB: Q9ESS6 (UniProtKB/Swiss-Prot),   A0A8I6A1Q0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047809   ⟸   ENSRNOT00000045574
Ensembl Acc Id: ENSRNOP00000089177   ⟸   ENSRNOT00000098572
Ensembl Acc Id: ENSRNOP00000085184   ⟸   ENSRNOT00000102437
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ESS6-F1-model_v2 AlphaFold Q9ESS6 1-624 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689782
Promoter ID:EPDNEW_R307
Type:multiple initiation site
Name:Bcam_1
Description:basal cell adhesion molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,689,138 - 80,689,198EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68378 AgrOrtholog
BioCyc Gene G2FUF-60485 BioCyc
Ensembl Genes ENSRNOG00000029399 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000045574 ENTREZGENE
  ENSRNOT00000045574.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7104047 IMAGE-MGC_LOAD
InterPro CD80_C2-set UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Surface_Rcpt/Adhesion_Mol UniProtKB/Swiss-Prot
KEGG Report rno:78958 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91621 IMAGE-MGC_LOAD
NCBI Gene 78958 ENTREZGENE
PANTHER BASAL CELL ADHESION MOLECULE UniProtKB/Swiss-Prot
  CELL SURFACE GLYCOPROTEIN MUC18-RELATED UniProtKB/Swiss-Prot
Pfam C2-set_2 UniProtKB/Swiss-Prot
  Ig_2 UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
PhenoGen Bcam PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000029399 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
TIGR TC229277
UniProt A0A8I6A1Q0 ENTREZGENE
  A0A8I6AB76_RAT UniProtKB/TrEMBL
  A6J8U6_RAT UniProtKB/TrEMBL
  BCAM_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-14 Bcam  basal cell adhesion molecule (Lutheran blood group)  Bcam  basal cell adhesion molecule  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Bcam  basal cell adhesion molecule  Lu  Lutheran blood group (Auberger b antigen included)  Symbol and Name updated 1299863 APPROVED
2002-06-10 Lu  Lutheran blood group (Auberger b antigen included)      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_product member of the Ig superfamily 724415