Ccnf (cyclin F) - Rat Genome Database

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Gene: Ccnf (cyclin F) Rattus norvegicus
Analyze
Symbol: Ccnf
Name: cyclin F
RGD ID: 67401
Description: Predicted to enable anaphase-promoting complex binding activity and cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and negative regulation of centrosome duplication. Predicted to act upstream of or within placenta development and re-entry into mitotic cell cycle. Predicted to be located in centriole. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm; microtubule organizing center; and nucleus. Orthologous to human CCNF (cyclin F); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cyclin-F
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,757,884 - 13,783,669 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1013,758,421 - 13,783,837 (-)EnsemblGRCr8
mRatBN7.21013,253,073 - 13,279,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,253,380 - 13,279,101 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1017,998,796 - 18,024,039 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,487,635 - 17,512,878 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,986,360 - 13,012,061 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,594,687 - 13,619,935 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,594,687 - 13,619,935 (-)Ensemblrn6Rnor6.0
Rnor_5.01013,410,718 - 13,435,965 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41013,474,659 - 13,500,979 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1012,939,775 - 12,964,974 (-)NCBICelera
RGSC_v3.11013,475,698 - 13,500,979 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpromazine  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
D-glucitol  (ISO)
DDE  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dieldrin  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
fenofibrate  (EXP)
formaldehyde  (ISO)
furan  (EXP)
hydroquinone  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
irinotecan  (ISO)
leflunomide  (EXP,ISO)
lidocaine  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methylisothiazolinone  (ISO)
microcystin-LR  (ISO)
Moniliformin  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-nitrosodiethylamine  (ISO)
nickel dichloride  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP,ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14993286   PMID:19028597   PMID:20596027  


Genomics

Comparative Map Data
Ccnf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,757,884 - 13,783,669 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1013,758,421 - 13,783,837 (-)EnsemblGRCr8
mRatBN7.21013,253,073 - 13,279,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,253,380 - 13,279,101 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1017,998,796 - 18,024,039 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,487,635 - 17,512,878 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,986,360 - 13,012,061 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,594,687 - 13,619,935 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,594,687 - 13,619,935 (-)Ensemblrn6Rnor6.0
Rnor_5.01013,410,718 - 13,435,965 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41013,474,659 - 13,500,979 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1012,939,775 - 12,964,974 (-)NCBICelera
RGSC_v3.11013,475,698 - 13,500,979 (-)NCBI
Cytogenetic Map10q12NCBI
CCNF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,429,447 - 2,458,854 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,429,394 - 2,458,854 (+)Ensemblhg38GRCh38
GRCh37162,479,448 - 2,508,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,419,396 - 2,448,860 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34162,419,440 - 2,448,856NCBI
Celera162,693,713 - 2,723,233 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,405,092 - 2,434,482 (+)NCBIHuRef
CHM1_1162,479,499 - 2,508,753 (+)NCBICHM1_1
T2T-CHM13v2.0162,451,862 - 2,480,982 (+)NCBIT2T-CHM13v2.0
Ccnf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,441,518 - 24,470,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,441,172 - 24,470,458 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381724,223,230 - 24,251,409 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,222,198 - 24,251,484 (-)Ensemblmm10GRCm38
MGSCv371724,360,177 - 24,388,354 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361723,950,149 - 23,978,947 (-)NCBIMGSCv36mm8
Celera1724,728,662 - 24,756,723 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.32NCBI
Ccnf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,865,954 - 14,890,709 (-)Ensembl
ChiLan1.0NW_00495544214,864,935 - 14,890,802 (-)NCBIChiLan1.0ChiLan1.0
CCNF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,930,446 - 2,960,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,711,523 - 6,741,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,285,379 - 1,314,972 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,526,035 - 2,558,265 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,529,371 - 2,556,438 (+)EnsemblpanPan2panpan1.1
CCNF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,572,883 - 38,592,465 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,574,234 - 38,592,435 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha639,811,687 - 39,830,658 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0638,882,560 - 38,901,542 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,882,570 - 38,901,547 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,567,686 - 38,586,705 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,540,319 - 38,559,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,016,472 - 39,035,536 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccnf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,088,821 - 105,112,566 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,596,766 - 1,620,643 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,596,897 - 1,620,588 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,585,607 - 39,603,079 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1339,585,597 - 39,603,088 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,640,736 - 42,658,423 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,302,249 - 2,336,188 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,302,341 - 2,335,270 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606828,701,622 - 28,738,252 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824181,735 - 204,029 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624824181,696 - 204,045 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccnf
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v191,518,089 - 1,544,406 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccnf
146 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:121
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000064392
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
D10Arb23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,265,081 - 13,265,233 (+)MAPPERmRatBN7.2
Rnor_6.01013,605,902 - 13,606,053NCBIRnor6.0
Rnor_5.01013,421,933 - 13,422,084UniSTSRnor5.0
RGSC_v3.41013,486,300 - 13,486,451UniSTSRGSC3.4
Celera1012,950,990 - 12,951,141UniSTS
RGSC_v3.11013,486,299 - 13,486,452RGD
Cytogenetic Map10q12UniSTS
RH128560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2630,893,747 - 30,893,954 (+)MAPPERmRatBN7.2
mRatBN7.21013,254,216 - 13,254,432 (+)MAPPERmRatBN7.2
Rnor_6.01013,595,037 - 13,595,252NCBIRnor6.0
Rnor_6.0633,226,252 - 33,226,458NCBIRnor6.0
Rnor_5.01013,411,068 - 13,411,283UniSTSRnor5.0
Rnor_5.0643,005,793 - 43,005,999UniSTSRnor5.0
RGSC_v3.4631,557,848 - 31,558,054UniSTSRGSC3.4
RGSC_v3.41013,475,009 - 13,475,224UniSTSRGSC3.4
Celera1012,940,125 - 12,940,340UniSTS
Celera630,349,095 - 30,349,301UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064392   ⟹   ENSRNOP00000060445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1013,758,421 - 13,782,331 (-)Ensembl
mRatBN7.2 Ensembl1013,253,380 - 13,279,101 (-)Ensembl
Rnor_6.0 Ensembl1013,594,687 - 13,619,935 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168620   ⟹   ENSRNOP00000105656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1013,758,421 - 13,783,837 (-)Ensembl
RefSeq Acc Id: NM_001100474   ⟹   NP_001093944
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,758,421 - 13,783,669 (-)NCBI
mRatBN7.21013,253,867 - 13,279,120 (-)NCBI
Rnor_6.01013,594,687 - 13,619,935 (-)NCBI
Rnor_5.01013,410,718 - 13,435,965 (-)NCBI
RGSC_v3.41013,474,659 - 13,500,979 (-)RGD
Celera1012,939,775 - 12,964,974 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085084   ⟹   XP_038941012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,757,884 - 13,783,653 (-)NCBI
mRatBN7.21013,253,073 - 13,279,140 (-)NCBI
RefSeq Acc Id: XM_063268339   ⟹   XP_063124409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,757,884 - 13,773,405 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001093944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941012 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124409 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAM46626 (Get FASTA)   NCBI Sequence Viewer  
  EDM03817 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060445
  ENSRNOP00000060445.1
  ENSRNOP00000105656
GenBank Protein Q8K4F8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001093944   ⟸   NM_001100474
- UniProtKB: D3ZCW7 (UniProtKB/Swiss-Prot),   Q8K4F8 (UniProtKB/Swiss-Prot),   A6HCR2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060445   ⟸   ENSRNOT00000064392
RefSeq Acc Id: XP_038941012   ⟸   XM_039085084
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124409   ⟸   XM_063268339
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000105656   ⟸   ENSRNOT00000168620
Protein Domains
Cyclin N-terminal   F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4F8-F1-model_v2 AlphaFold Q8K4F8 1-780 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697006
Promoter ID:EPDNEW_R7531
Type:initiation region
Name:Ccnf_1
Description:cyclin F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01013,619,953 - 13,620,013EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67401 AgrOrtholog
BioCyc Gene G2FUF-25867 BioCyc
Ensembl Genes ENSRNOG00000007483 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000064392 ENTREZGENE
  ENSRNOT00000064392.2 UniProtKB/Swiss-Prot
  ENSRNOT00000168620 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
  Cyclin-like UniProtKB/Swiss-Prot
InterPro Cyclin UniProtKB/Swiss-Prot
  Cyclin-like UniProtKB/Swiss-Prot
  Cyclin-like_sf UniProtKB/Swiss-Prot
  Cyclin_C-dom UniProtKB/Swiss-Prot
  Cyclin_N UniProtKB/Swiss-Prot
  Cyclins_cyclin-box UniProtKB/Swiss-Prot
  F-box-like_dom_sf UniProtKB/Swiss-Prot
  F-box_dom UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:117524 UniProtKB/Swiss-Prot
NCBI Gene 117524 ENTREZGENE
PANTHER PTHR10177 UniProtKB/Swiss-Prot
Pfam Cyclin_C UniProtKB/Swiss-Prot
  Cyclin_N UniProtKB/Swiss-Prot
  F-box-like UniProtKB/Swiss-Prot
PhenoGen Ccnf PhenoGen
PROSITE CYCLINS UniProtKB/Swiss-Prot
  FBOX UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000007483 RatGTEx
SMART CYCLIN UniProtKB/Swiss-Prot
  Cyclin_C UniProtKB/Swiss-Prot
  FBOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot
  SSF81383 UniProtKB/Swiss-Prot
UniProt A0ABK0LU10_RAT UniProtKB/TrEMBL
  A6HCR2 ENTREZGENE, UniProtKB/TrEMBL
  CCNF_RAT UniProtKB/Swiss-Prot
  D3ZCW7 ENTREZGENE
  Q8K4F8 ENTREZGENE
UniProt Secondary D3ZCW7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ccnf  cyclin F      Symbol and Name status set to approved 70586 APPROVED
2001-10-22 Ccnf  Cyclin F      Added name, no other information available 68916 RESERVED