Ppp4r3cl3 (protein phosphatase 4 regulatory subunit 3C like 3) - Rat Genome Database

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Gene: Ppp4r3cl3 (protein phosphatase 4 regulatory subunit 3C like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ppp4r3cl3
Name: protein phosphatase 4 regulatory subunit 3C like 3
RGD ID: 6503220
Description: Predicted to enable protein phosphatase regulator activity. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100909486; LOC302448; Ppp4r3cl1; protein phosphatase 4 regulatory subunit 3C like 1; putative SMEK homolog 3; putative SMEK homolog 3-like; RGD1562980; similar to KIAA1387 protein
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X58,979,369 - 58,982,372 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX58,979,718 - 58,982,388 (-)EnsemblGRCr8
mRatBN7.2X55,009,116 - 55,012,319 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX55,009,467 - 55,012,137 (-)EnsemblmRatBN7.2
Rnor_6.0X59,275,845 - 59,277,519 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X59,876,294 - 59,877,986 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X77,553,065 - 77,555,996 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX55,516,381 - 55,519,245 (-)NCBICelera
Cytogenetic MapXq21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Ppp4r3cl3
5 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
2 2

Sequence


RefSeq Acc Id: XM_039100352   ⟹   XP_038956280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X58,979,369 - 58,982,372 (-)NCBI
mRatBN7.2X55,009,116 - 55,012,319 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956280 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076891.1
RefSeq Acc Id: XP_038956280   ⟸   XM_039100352
- UniProtKB: A0A8I5YBI9 (UniProtKB/TrEMBL)
Protein Domains
PP4R3 EVH1-like   Serine/threonine-protein phosphatase 4 regulatory

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2305 BioCyc
Ensembl Genes ENSRNOG00000051287 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075855.3 UniProtKB/TrEMBL
Gene3D-CATH Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  EVH1_PP4R3 UniProtKB/TrEMBL
  P4R3-like_central_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PP4_regulatory_subunit_3 UniProtKB/TrEMBL
NCBI Gene LOC100909486 ENTREZGENE
PANTHER ATP SYNTHASE GAMMA-RELATED UniProtKB/TrEMBL
  PROTEIN PPP4R3C UniProtKB/TrEMBL
Pfam EVH1_PP4R3 UniProtKB/TrEMBL
  PP4R3 UniProtKB/TrEMBL
PhenoGen Ppp4r3cl3 PhenoGen
RatGTEx ENSRNOG00000051287 RatGTEx
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt A0A8I5YBI9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Ppp4r3cl3  protein phosphatase 4 regulatory subunit 3C like 3  Ppp4r3cl1  protein phosphatase 4 regulatory subunit 3C like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Ppp4r3cl1  protein phosphatase 4 regulatory subunit 3C like 1  LOC100909486  putative SMEK homolog 3-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100909486  putative SMEK homolog 3-like  RGD1562980  similar to KIAA1387 protein  Data merged from RGD:1562980 737654 PROVISIONAL
2012-07-05 LOC100909486  putative SMEK homolog 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1562980  similar to KIAA1387 protein   RGD1562980_predicted  similar to KIAA1387 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562980_predicted  similar to KIAA1387 protein (predicted)  LOC302448  similar to KIAA1387 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302448  similar to KIAA1387 protein      Symbol and Name status set to provisional 70820 PROVISIONAL