Larp4 (La ribonucleoprotein 4) - Rat Genome Database

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Gene: Larp4 (La ribonucleoprotein 4) Rattus norvegicus
Analyze
Symbol: Larp4
Name: La ribonucleoprotein 4
RGD ID: 6499275
Description: Predicted to enable mRNA 3'-UTR binding activity and poly(A) binding activity. Predicted to be involved in cytoskeleton organization; positive regulation of translation; and regulation of cell morphogenesis. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasmic stress granule and cytosol. Orthologous to human LARP4 (La ribonucleoprotein 4); INTERACTS WITH bisphenol A; tetrachloromethane; vinclozolin.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: La ribonucleoprotein domain family, member 4; la-related protein 4; la-related protein 4-like; LOC100910299; LOC681258; similar to La-related protein 4 (La ribonucleoprotein domain family member 4)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Larp4-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,983,276 - 133,031,514 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7132,980,385 - 133,029,633 (+)EnsemblGRCr8
mRatBN7.27131,104,470 - 131,152,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,101,564 - 131,150,811 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd7135,067,390 - 135,115,813 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive7136,018,756 - 136,067,179 (+)NCBILyon_Normotensive
Lyon_Hypertensive7136,146,319 - 136,194,741 (+)NCBILyon_Hypertensive
F344_StmMcwi7134,590,531 - 134,638,950 (+)NCBIF344_StmMcwi
Rnor_6.07141,630,229 - 141,676,242 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X116,168,986 - 116,180,803 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47138,721,956 - 138,782,046 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7127,583,683 - 127,631,712 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
deoxynivalenol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
folic acid  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
hydrogen peroxide  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dichloride  (ISO)
Nivalenol  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulindac  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888   PMID:21098120   PMID:21834987   PMID:22658674   PMID:22681889   PMID:31505169  


Genomics

Comparative Map Data
Larp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,983,276 - 133,031,514 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7132,980,385 - 133,029,633 (+)EnsemblGRCr8
mRatBN7.27131,104,470 - 131,152,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,101,564 - 131,150,811 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd7135,067,390 - 135,115,813 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive7136,018,756 - 136,067,179 (+)NCBILyon_Normotensive
Lyon_Hypertensive7136,146,319 - 136,194,741 (+)NCBILyon_Hypertensive
F344_StmMcwi7134,590,531 - 134,638,950 (+)NCBIF344_StmMcwi
Rnor_6.07141,630,229 - 141,676,242 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X116,168,986 - 116,180,803 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47138,721,956 - 138,782,046 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7127,583,683 - 127,631,712 (+)NCBICelera
Cytogenetic Map7q36NCBI
LARP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,400,885 - 50,480,004 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,392,383 - 50,480,007 (+)Ensemblhg38GRCh38
GRCh371250,794,668 - 50,873,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,080,917 - 49,160,055 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1249,590,531 - 49,670,923 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,827,472 - 47,906,426 (+)NCBIHuRef
CHM1_11250,760,745 - 50,840,185 (+)NCBICHM1_1
T2T-CHM13v2.01250,363,921 - 50,443,087 (+)NCBIT2T-CHM13v2.0
Larp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,867,946 - 99,914,239 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,867,946 - 99,914,239 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381599,970,065 - 100,016,358 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,970,065 - 100,016,358 (+)Ensemblmm10GRCm38
MGSCv371599,800,505 - 99,846,789 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361599,798,301 - 99,844,653 (+)NCBIMGSCv36mm8
Celera15102,125,453 - 102,171,992 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Larp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547930,988 - 996,877 (+)Ensembl
ChiLan1.0NW_004955547930,988 - 996,877 (+)NCBIChiLan1.0ChiLan1.0
LARP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,708,992 - 43,788,094 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,705,752 - 43,784,849 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,276,200 - 38,355,281 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,175,129 - 39,253,491 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,175,129 - 39,253,543 (-)EnsemblpanPan2panpan1.1
LARP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,255,070 - 4,408,066 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,256,040 - 4,325,987 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2741,824,057 - 42,005,763 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0274,300,613 - 4,482,850 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,302,570 - 4,373,658 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,266,265 - 4,447,412 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,253,948 - 4,436,099 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,218,512 - 42,400,838 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Larp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,069,199 - 65,142,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,023,891 - 8,095,919 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,024,121 - 8,093,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LARP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,177,235 - 16,353,546 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1516,177,245 - 16,353,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,652,607 - 16,886,399 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LARP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,647,743 - 46,704,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,652,248 - 46,704,549 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037199,402,273 - 199,485,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Larp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248161,879,731 - 1,943,224 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Larp4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11272,780,335 - 272,828,925 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Larp4
327 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:15
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000071031
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BF405290  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,141,551 - 131,141,651 (+)MAPPERmRatBN7.2
Rnor_6.07141,668,488 - 141,668,587NCBIRnor6.0
Rnor_5.0X116,172,637 - 116,172,736UniSTSRnor5.0
Celera7127,620,608 - 127,620,707UniSTS
RH 3.4 Map71076.0UniSTS
AU046747  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,142,759 - 131,142,837 (+)MAPPERmRatBN7.2
Rnor_6.07141,669,696 - 141,669,773NCBIRnor6.0
Rnor_5.0X116,173,845 - 116,173,922UniSTSRnor5.0
Celera7127,621,780 - 127,621,857UniSTS
UniSTS:234690  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21836,199,425 - 36,199,654 (+)MAPPERmRatBN7.2
mRatBN7.27131,117,420 - 131,118,673 (+)MAPPERmRatBN7.2
Rnor_6.07141,643,189 - 141,644,441NCBIRnor6.0
Rnor_6.01229,206,489 - 229,206,717NCBIRnor6.0
Rnor_5.0X116,149,645 - 116,150,897UniSTSRnor5.0
Rnor_5.01236,363,362 - 236,363,590UniSTSRnor5.0
RGSC_v3.47138,736,874 - 138,738,126UniSTSRGSC3.4
RGSC_v3.41837,498,068 - 37,498,296UniSTSRGSC3.4
Celera7127,596,643 - 127,597,895UniSTS
Cytogenetic Map18q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 67 138 95 11 51 36 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079811   ⟹   ENSRNOP00000074535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7132,995,828 - 133,007,897 (+)Ensembl
mRatBN7.2 Ensembl7131,117,009 - 131,129,073 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096188   ⟹   ENSRNOP00000090169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7132,990,573 - 133,029,633 (+)Ensembl
mRatBN7.2 Ensembl7131,142,028 - 131,150,811 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101712   ⟹   ENSRNOP00000092995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7132,980,385 - 133,029,633 (+)Ensembl
mRatBN7.2 Ensembl7131,101,564 - 131,150,790 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105570   ⟹   ENSRNOP00000086272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7132,983,313 - 133,029,633 (+)Ensembl
mRatBN7.2 Ensembl7131,104,481 - 131,150,789 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112803   ⟹   ENSRNOP00000078895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7132,980,392 - 133,029,633 (+)Ensembl
mRatBN7.2 Ensembl7131,104,473 - 131,150,790 (+)Ensembl
RefSeq Acc Id: NM_001432235   ⟹   NP_001419164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd7135,067,390 - 135,115,813 (+)NCBI
Lyon_Normotensive7136,018,756 - 136,067,179 (+)NCBI
Lyon_Hypertensive7136,146,319 - 136,194,741 (+)NCBI
F344_StmMcwi7134,590,531 - 134,638,950 (+)NCBI
RefSeq Acc Id: NM_001432236   ⟹   NP_001419165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd7135,067,390 - 135,115,813 (+)NCBI
Lyon_Normotensive7136,018,756 - 136,067,179 (+)NCBI
Lyon_Hypertensive7136,146,319 - 136,194,741 (+)NCBI
F344_StmMcwi7134,590,531 - 134,638,950 (+)NCBI
RefSeq Acc Id: NM_001432237   ⟹   NP_001419166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd7135,067,390 - 135,115,813 (+)NCBI
Lyon_Normotensive7136,018,756 - 136,067,179 (+)NCBI
Lyon_Hypertensive7136,146,319 - 136,194,741 (+)NCBI
F344_StmMcwi7134,590,531 - 134,638,950 (+)NCBI
RefSeq Acc Id: NM_001432238   ⟹   NP_001419167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd7135,067,390 - 135,115,813 (+)NCBI
Lyon_Normotensive7136,018,756 - 136,067,179 (+)NCBI
Lyon_Hypertensive7136,146,319 - 136,194,741 (+)NCBI
F344_StmMcwi7134,590,531 - 134,638,950 (+)NCBI
RefSeq Acc Id: XM_039080365   ⟹   XP_038936293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,278 - 133,031,514 (+)NCBI
mRatBN7.27131,104,470 - 131,152,692 (+)NCBI
RefSeq Acc Id: XM_039080366   ⟹   XP_038936294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,276 - 133,031,514 (+)NCBI
mRatBN7.27131,104,470 - 131,148,663 (+)NCBI
RefSeq Acc Id: XM_039080367   ⟹   XP_038936295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,278 - 133,031,514 (+)NCBI
mRatBN7.27131,104,471 - 131,152,692 (+)NCBI
RefSeq Acc Id: XM_039080368   ⟹   XP_038936296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,291 - 133,031,514 (+)NCBI
mRatBN7.27131,104,490 - 131,152,692 (+)NCBI
RefSeq Acc Id: XM_039080369   ⟹   XP_038936297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,823 - 133,031,514 (+)NCBI
mRatBN7.27131,109,249 - 131,152,692 (+)NCBI
RefSeq Acc Id: XM_039080371   ⟹   XP_038936299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,291 - 133,031,514 (+)NCBI
mRatBN7.27131,104,490 - 131,152,692 (+)NCBI
RefSeq Acc Id: XM_039080372   ⟹   XP_038936300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,823 - 133,031,514 (+)NCBI
mRatBN7.27131,109,249 - 131,152,692 (+)NCBI
RefSeq Acc Id: XM_063264366   ⟹   XP_063120436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,983,276 - 133,031,514 (+)NCBI
RefSeq Acc Id: XP_038936293   ⟸   XM_039080365
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936294   ⟸   XM_039080366
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038936295   ⟸   XM_039080367
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936296   ⟸   XM_039080368
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZLN6 (UniProtKB/TrEMBL),   A0A8I6AJD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936299   ⟸   XM_039080371
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AJD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936297   ⟸   XM_039080369
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZLN6 (UniProtKB/TrEMBL),   A0A8I6AJD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936300   ⟸   XM_039080372
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AJD5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000074535   ⟸   ENSRNOT00000079811
Ensembl Acc Id: ENSRNOP00000078895   ⟸   ENSRNOT00000112803
Ensembl Acc Id: ENSRNOP00000090169   ⟸   ENSRNOT00000096188
Ensembl Acc Id: ENSRNOP00000092995   ⟸   ENSRNOT00000101712
Ensembl Acc Id: ENSRNOP00000086272   ⟸   ENSRNOT00000105570
RefSeq Acc Id: XP_063120436   ⟸   XM_063264366
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001419164   ⟸   NM_001432235
RefSeq Acc Id: NP_001419166   ⟸   NM_001432237
RefSeq Acc Id: NP_001419165   ⟸   NM_001432236
RefSeq Acc Id: NP_001419167   ⟸   NM_001432238
Protein Domains
HTH La-type RNA-binding

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6499275 AgrOrtholog
BioCyc Gene G2FUF-32036 BioCyc
Ensembl Genes ENSRNOG00000068079 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079811.3 UniProtKB/TrEMBL
  ENSRNOT00000096188 ENTREZGENE
  ENSRNOT00000096188.2 UniProtKB/TrEMBL
  ENSRNOT00000101712 ENTREZGENE
  ENSRNOT00000101712.2 UniProtKB/TrEMBL
  ENSRNOT00000105570 ENTREZGENE
  ENSRNOT00000105570.2 UniProtKB/TrEMBL
  ENSRNOT00000112803 ENTREZGENE
  ENSRNOT00000112803.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro La_dom_prot UniProtKB/TrEMBL
  La_HTH UniProtKB/TrEMBL
  LARP4_RRM UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC100910299 ENTREZGENE
PANTHER LA-RELATED PROTEIN 4 UniProtKB/TrEMBL
  PTHR22792 UniProtKB/TrEMBL
Pfam PF05383 UniProtKB/TrEMBL
PhenoGen Larp4 PhenoGen
PROSITE HTH_LA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068079 RatGTEx
SMART SM00715 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2K8A9_RAT UniProtKB/TrEMBL
  A0A8I5ZLN6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7G2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABX4_RAT UniProtKB/TrEMBL
  A0A8I6AJD5 ENTREZGENE, UniProtKB/TrEMBL
  A6KCI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Larp4  La ribonucleoprotein 4  Larp4  La ribonucleoprotein 4  Data merged from RGD:149736511 737654 PROVISIONAL
2021-08-09 Larp4  La ribonucleoprotein 4      Symbol and Name status set to provisional 45752 PROVISIONAL
2019-09-13 Larp4  La ribonucleoprotein 4  Larp4  La ribonucleoprotein domain family, member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Larp4  La ribonucleoprotein domain family, member 4  LOC681258  similar to La-related protein 4 (La ribonucleoprotein domain family member 4)  Data merged from RGD:1598014 737654 PROVISIONAL
2014-11-07 Larp4  La ribonucleoprotein domain family, member 4  LOC100910299  la-related protein 4-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC681258  similar to La-related protein 4 (La ribonucleoprotein domain family member 4)      Symbol and Name status set to provisional 70820 PROVISIONAL