LOC100910341 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like) - Rat Genome Database

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Gene: LOC100910341 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100910341
Name: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like
RGD ID: 6498839
Description: Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC685367; nucleic acid binding protein-like; similar to putative nucleic acid binding protein RY-1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,835,702 - 13,836,446 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1513,836,012 - 13,836,446 (-)EnsemblGRCr8
mRatBN7.21511,405,433 - 11,405,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1511,405,522 - 11,405,956 (-)EnsemblmRatBN7.2
Rnor_6.01512,723,171 - 12,723,697 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01516,750,995 - 16,751,497 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41512,959,191 - 12,959,625 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1511,411,599 - 11,412,125 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Genomics

Variants

.
Variants in LOC100910341
11 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
1300142Bp191Blood pressure QTL 1913.14arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)15115177511Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 8 2 6 3 1 9 2 2 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000096018   ⟹   ENSRNOP00000085460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1513,836,012 - 13,836,446 (-)Ensembl
mRatBN7.2 Ensembl1511,405,522 - 11,405,956 (-)Ensembl
RefSeq Acc Id: XM_039094024   ⟹   XP_038949952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81513,835,702 - 13,836,446 (-)NCBI
mRatBN7.21511,405,433 - 11,405,971 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038949952 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085460
  ENSRNOP00000085460.1
RefSeq Acc Id: XP_038949952   ⟸   XM_039094024
- UniProtKB: A0A8I6A1F0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085460   ⟸   ENSRNOT00000096018
Protein Domains
U4/U6.U5 small nuclear ribonucleoprotein 27kDa

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6498839 AgrOrtholog
BioCyc Gene G2FUF-14370 BioCyc
Ensembl Genes ENSRNOG00000070440 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000096018 ENTREZGENE
  ENSRNOT00000096018.2 UniProtKB/TrEMBL
InterPro SNRNP27 UniProtKB/TrEMBL
NCBI Gene LOC100910341 ENTREZGENE
PANTHER U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN UniProtKB/TrEMBL
  U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN UniProtKB/TrEMBL
Pfam SNRNP27 UniProtKB/TrEMBL
PhenoGen LOC100910341 PhenoGen
RatGTEx ENSRNOG00000070440 RatGTEx
UniProt A0A8I6A1F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC100910341  U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like  LOC685367  similar to putative nucleic acid binding protein RY-1  Data merged from RGD:1595081 737654 PROVISIONAL
2013-05-24 LOC685367  similar to putative nucleic acid binding protein RY-1  LOC100364698  nucleic acid binding protein-like  Data merged from RGD:2320565 1643240 APPROVED
2012-07-05 LOC100910341  U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100364698  nucleic acid binding protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685367  similar to putative nucleic acid binding protein RY-1  LOC684256  similar to putative nucleic acid binding protein RY-1  Data merged from RGD:1592691 1643240 APPROVED
2006-11-20 LOC685367  similar to putative nucleic acid binding protein RY-1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684256  similar to putative nucleic acid binding protein RY-1      Symbol and Name status set to provisional 70820 PROVISIONAL