LOC100911718 (cytochrome P450 2C6-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC100911718 (cytochrome P450 2C6-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100911718 (Ensembl: LOC120093077)
Name: cytochrome P450 2C6-like (Ensembl:cytochrome P450 2C6)
RGD ID: 6491302
Description: ENCODES a protein that exhibits heme binding (inferred); iron ion binding (inferred); metal ion binding (inferred); FOUND IN endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome P450 2C6
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,013,646 - 247,060,237 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21237,693,101 - 237,722,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1237,693,094 - 238,057,596 (+)EnsemblmRatBN7.2
Rnor_6.01147,883,946 - 147,887,671 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01154,173,344 - 154,176,981 (+)NCBIRnor_5.0Rnor_5.0rn5
Cytogenetic Map1q53NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC100911718
294 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1223964326248681945Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238398865255849249Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228180243255849249Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
integumental system
mesenchyme
mesoderm
renal system
2 3 2 4 2 1

Sequence


Ensembl Acc Id: ENSRNOT00000054742   ⟹   ENSRNOP00000051625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1246,664,670 - 246,702,947 (+)Ensembl
mRatBN7.2 Ensembl1237,938,512 - 238,057,596 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092928   ⟹   ENSRNOP00000076032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1237,946,819 - 238,057,596 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092985   ⟹   ENSRNOP00000075936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1237,693,094 - 238,057,596 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092999   ⟹   ENSRNOP00000075960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1237,693,132 - 237,697,804 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093050   ⟹   ENSRNOP00000094011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1246,664,670 - 246,702,874 (+)Ensembl
mRatBN7.2 Ensembl1237,939,499 - 238,057,596 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095788   ⟹   ENSRNOP00000085080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1237,771,380 - 237,834,321 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098119   ⟹   ENSRNOP00000086063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1237,693,094 - 237,722,281 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098366   ⟹   ENSRNOP00000081674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1246,664,672 - 246,702,947 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107055   ⟹   ENSRNOP00000093998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1237,771,380 - 237,834,321 (+)Ensembl
RefSeq Acc Id: XM_063280351   ⟹   XP_063136421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,647 - 247,060,234 (+)NCBI
RefSeq Acc Id: XM_063280352   ⟹   XP_063136422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,646 - 247,060,237 (+)NCBI
RefSeq Acc Id: XM_063280353   ⟹   XP_063136423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,646 - 247,060,237 (+)NCBI
RefSeq Acc Id: XM_063280354   ⟹   XP_063136424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,647 - 247,060,237 (+)NCBI
RefSeq Acc Id: XM_063280359   ⟹   XP_063136429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,646 - 247,018,116 (+)NCBI
RefSeq Acc Id: XR_010061283
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,646 - 247,055,475 (+)NCBI
RefSeq Acc Id: XR_010061284
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,013,646 - 247,053,633 (+)NCBI
Ensembl Acc Id: ENSRNOP00000094011   ⟸   ENSRNOT00000093050
Ensembl Acc Id: ENSRNOP00000076032   ⟸   ENSRNOT00000092928
Ensembl Acc Id: ENSRNOP00000093998   ⟸   ENSRNOT00000107055
Ensembl Acc Id: ENSRNOP00000086063   ⟸   ENSRNOT00000098119
Ensembl Acc Id: ENSRNOP00000075936   ⟸   ENSRNOT00000092985
Ensembl Acc Id: ENSRNOP00000051625   ⟸   ENSRNOT00000054742
Ensembl Acc Id: ENSRNOP00000085080   ⟸   ENSRNOT00000095788
Ensembl Acc Id: ENSRNOP00000075960   ⟸   ENSRNOT00000092999
RefSeq Acc Id: XP_063136423   ⟸   XM_063280353
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GWV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136422   ⟸   XM_063280352
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GWV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136429   ⟸   XM_063280359
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063136424   ⟸   XM_063280354
- Peptide Label: isoform X3
- UniProtKB: Q498S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136421   ⟸   XM_063280351
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWL1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081674   ⟸   ENSRNOT00000098366

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55754 BioCyc
Ensembl Genes ENSRNOG00000024016 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000056733 UniProtKB/TrEMBL
  ENSRNOG00000082841 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092928.3 UniProtKB/TrEMBL
  ENSRNOT00000093050.3 UniProtKB/TrEMBL
  ENSRNOT00000098119 ENTREZGENE
  ENSRNOT00000098119.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  Cytochrome_P450_fam2 UniProtKB/TrEMBL
NCBI Gene LOC100911718 ENTREZGENE
PANTHER CYTOCHROME P450 2C29-RELATED UniProtKB/TrEMBL
  CYTOCHROME P450 508A4-RELATED UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PhenoGen LOC100911718 PhenoGen
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024016 RatGTEx
  ENSRNOG00000056733 RatGTEx
  ENSRNOG00000082841 RatGTEx
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A1B0GWL1 ENTREZGENE
  A0A1B0GWV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4P2_RAT UniProtKB/TrEMBL
  A0A8I6ALK6_RAT UniProtKB/TrEMBL
  Q498S4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100911718  cytochrome P450 2C6-like      Symbol and Name status set to provisional 70820 PROVISIONAL