Cryl1 (crystallin, lambda 1) - Rat Genome Database

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Gene: Cryl1 (crystallin, lambda 1) Rattus norvegicus
Analyze
Symbol: Cryl1
Name: crystallin, lambda 1
RGD ID: 631427
Description: Predicted to enable L-gulonate 3-dehydrogenase activity; NAD+ binding activity; and protein homodimerization activity. Predicted to be involved in D-glucuronate catabolic process to D-xylulose 5-phosphate. Predicted to be located in cytosol. Orthologous to human CRYL1 (crystallin lambda 1); PARTICIPATES IN pentose and glucuronate interconversion pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: crystallin, lamda 1; gul3DH; L-gulonate 3-dehydrogenase; lambda-crystallin homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,542,628 - 35,661,563 (-)NCBIGRCr8
mRatBN7.21531,427,011 - 31,545,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,427,054 - 31,545,997 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,418,360 - 33,537,311 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01534,569,025 - 34,687,978 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,827,144 - 32,946,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01537,543,727 - 37,663,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,543,727 - 37,663,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,389,673 - 41,509,443 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,320,075 - 36,440,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,335,774 - 36,456,279 (-)NCBI
Celera1531,137,966 - 31,257,153 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2-acetamidofluorene  (EXP)
2-amino-4,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
5-fluorouracil  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (EXP)
cycloheximide  (ISO)
cyclosporin A  (ISO)
Diallyl sulfide  (EXP)
dibutyl phthalate  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (EXP)
endosulfan  (EXP)
entinostat  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
lead diacetate  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
niclosamide  (ISO)
nimesulide  (EXP)
orphenadrine  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenformin  (EXP)
phenobarbital  (EXP,ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
XL147  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Human CRYL1, a novel enzyme-crystallin overexpressed in liver and kidney and downregulated in 58% of liver cancer tissues from 60 Chinese patients, and four new homologs from other mammalians. Chen J, etal., Gene 2003 Jan 2;302(1-2):103-13.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:15809331   PMID:19056867   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Cryl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,542,628 - 35,661,563 (-)NCBIGRCr8
mRatBN7.21531,427,011 - 31,545,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,427,054 - 31,545,997 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,418,360 - 33,537,311 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01534,569,025 - 34,687,978 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,827,144 - 32,946,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01537,543,727 - 37,663,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,543,727 - 37,663,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,389,673 - 41,509,443 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,320,075 - 36,440,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,335,774 - 36,456,279 (-)NCBI
Celera1531,137,966 - 31,257,153 (-)NCBICelera
Cytogenetic Map15p12NCBI
CRYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381320,403,669 - 20,525,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1320,403,666 - 20,525,873 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,977,808 - 21,099,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,875,806 - 19,998,012 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,875,812 - 19,997,943NCBI
Celera132,039,633 - 2,161,963 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,781,253 - 1,903,750 (-)NCBIHuRef
CHM1_11320,946,082 - 21,068,258 (-)NCBICHM1_1
T2T-CHM13v2.01319,596,766 - 19,719,067 (-)NCBIT2T-CHM13v2.0
Cryl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,512,491 - 57,635,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,512,450 - 57,635,986 (-)EnsemblGRCm39 Ensembl
GRCm381457,275,034 - 57,398,483 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,274,993 - 57,398,529 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,893,871 - 58,017,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361456,229,144 - 56,352,593 (-)NCBIMGSCv36mm8
Celera1455,069,601 - 55,193,438 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1430.1NCBI
Cryl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554971,182,115 - 1,292,721 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554971,183,707 - 1,316,720 (-)NCBIChiLan1.0ChiLan1.0
CRYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21420,032,859 - 20,155,259 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11311,145,280 - 11,267,611 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,729,724 - 1,852,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11320,043,630 - 20,165,344 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1320,043,630 - 20,165,344 (-)Ensemblpanpan1.1panPan2
CRYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12517,551,586 - 17,733,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2517,562,926 - 17,733,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2517,619,089 - 17,764,441 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02517,726,192 - 17,871,609 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2517,700,683 - 17,871,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12517,597,124 - 17,742,462 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02517,608,651 - 17,753,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02517,665,268 - 17,810,580 (+)NCBIUU_Cfam_GSD_1.0
Cryl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945119,654,108 - 119,786,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,201,697 - 1,334,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,201,725 - 1,334,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11845,475 - 931,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111845,471 - 925,849 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,725 - 138,292 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.13567,937 - 704,109 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl3567,931 - 688,388 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,881,123 - 44,023,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cryl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,127,002 - 17,312,348 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,127,362 - 17,312,271 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cryl1
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:42
Interacting mature miRNAs:43
Transcripts:ENSRNOT00000012093
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000012093   ⟹   ENSRNOP00000012093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1531,427,054 - 31,545,997 (-)Ensembl
Rnor_6.0 Ensembl1537,543,727 - 37,663,584 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094908   ⟹   ENSRNOP00000083620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1531,427,054 - 31,530,546 (-)Ensembl
RefSeq Acc Id: NM_175757   ⟹   NP_786933
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81535,542,628 - 35,661,563 (-)NCBI
mRatBN7.21531,427,054 - 31,545,997 (-)NCBI
Rnor_6.01537,543,770 - 37,663,586 (-)NCBI
Rnor_5.01541,389,673 - 41,509,443 (-)NCBI
RGSC_v3.41536,320,075 - 36,440,579 (-)RGD
Celera1531,137,966 - 31,257,153 (-)RGD
Sequence:
RefSeq Acc Id: NP_786933   ⟸   NM_175757
- UniProtKB: Q811X6 (UniProtKB/Swiss-Prot),   A0A8I5ZZK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012093   ⟸   ENSRNOT00000012093
Ensembl Acc Id: ENSRNOP00000083620   ⟸   ENSRNOT00000094908
Protein Domains
3-hydroxyacyl-CoA dehydrogenase C-terminal   3-hydroxyacyl-CoA dehydrogenase NAD binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q811X6-F1-model_v2 AlphaFold Q811X6 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699718
Promoter ID:EPDNEW_R10242
Type:multiple initiation site
Name:Cryl1_1
Description:crystallin, lambda 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01537,663,576 - 37,663,636EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631427 AgrOrtholog
BioCyc Gene G2FUF-13606 BioCyc
Ensembl Genes ENSRNOG00000008989 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012434 UniProtKB/Swiss-Prot
  ENSRNOG00060020195 UniProtKB/Swiss-Prot
  ENSRNOG00065031219 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012093.4 UniProtKB/Swiss-Prot
  ENSRNOT00000094908.1 UniProtKB/TrEMBL
  ENSRNOT00055021195 UniProtKB/Swiss-Prot
  ENSRNOT00060035083 UniProtKB/Swiss-Prot
  ENSRNOT00065053860 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110482 IMAGE-MGC_LOAD
InterPro 3-OHacyl-CoA_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3-OHacyl-CoA_DH_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3-OHacyl-CoA_DH_NAD-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3HC_DH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6-PGluconate_DH-like_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290277 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93049 IMAGE-MGC_LOAD
NCBI Gene 290277 ENTREZGENE
PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMBDA-CRYSTALLIN HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 3HCDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3HCDH_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cryl1 PhenoGen
PIRSF HCDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE 3HCDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008989 RatGTEx
  ENSRNOG00055012434 RatGTEx
  ENSRNOG00060020195 RatGTEx
  ENSRNOG00065031219 RatGTEx
Superfamily-SCOP SSF48179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZZK9 ENTREZGENE, UniProtKB/TrEMBL
  A6KHB5_RAT UniProtKB/TrEMBL
  A6KHB6_RAT UniProtKB/TrEMBL
  A6KHB7_RAT UniProtKB/TrEMBL
  A6KHB9_RAT UniProtKB/TrEMBL
  CRYL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-25 Cryl1  crystallin, lambda 1  Cryl1  crystallin, lamda 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-11 Cryl1  crystallin, lamda 1      Symbol and Name status set to approved 625702 APPROVED