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Gene: Zfp180 (zinc finger protein 180) Rattus norvegicus

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Symbol:

Zfp180

Name:

zinc finger protein 180

RGD ID:

631380

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF180 (zinc finger protein 180); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cys2/His2 zinc finger protein (rKr1); rKr1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF180 (zinc finger protein 180)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf180 (zinc finger protein 180)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF329 (zinc finger protein 329)	HGNC	PhylomeDB
Homo sapiens (human):	SP2 (Sp2 transcription factor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF180 (zinc finger protein 180)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF180 (zinc finger protein 180)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp180 (zinc finger protein 180)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG2712	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	88,780,342 - 88,800,637 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	88,780,342 - 88,800,627 (+)	Ensembl				GRCr8
mRatBN7.2	1	79,652,441 - 79,672,737 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	79,652,441 - 79,672,733 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	85,045,886 - 85,066,007 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	93,595,855 - 93,616,151 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	86,801,700 - 86,821,817 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	80,920,745 - 80,940,038 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,920,747 - 80,940,040 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	82,186,002 - 82,205,295 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	79,305,915 - 79,326,207 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	74,108,403 - 74,128,697 (+)	NCBI		Celera
RGSC_v3.1	1	79,384,025 - 79,403,804 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3,5-trinitro-1,3,5-triazinane (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

atrazine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethanol (ISO)

formaldehyde (ISO)

gentamycin (EXP)

iron dichloride (ISO)

methapyrilene (EXP)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

oxaliplatin (EXP)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl caffeate (EXP)

rotenone (EXP)

selenium atom (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of macromolecule metabolic process (IEA)

regulation of primary metabolic process (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A new Cys2/His2 zinc finger gene, rKr1, expressed in oligodendrocytes and neurons.	Pott U, etal., Brain Res Mol Brain Res 1996 May;38(1):109-21.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548

Genomics

Comparative Map Data

Zfp180
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	88,780,342 - 88,800,637 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	88,780,342 - 88,800,627 (+)	Ensembl				GRCr8
mRatBN7.2	1	79,652,441 - 79,672,737 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	79,652,441 - 79,672,733 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	85,045,886 - 85,066,007 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	93,595,855 - 93,616,151 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	86,801,700 - 86,821,817 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	80,920,745 - 80,940,038 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,920,747 - 80,940,040 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	82,186,002 - 82,205,295 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	79,305,915 - 79,326,207 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	74,108,403 - 74,128,697 (+)	NCBI		Celera
RGSC_v3.1	1	79,384,025 - 79,403,804 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

ZNF180
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	44,474,431 - 44,500,522 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	44,470,957 - 44,500,540 (-)	Ensembl			hg38	GRCh38
GRCh37	19	44,978,648 - 45,004,574 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	49,671,701 - 49,696,395 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	49,671,700 - 49,696,395	NCBI
Celera	19	41,783,864 - 41,808,558 (-)	NCBI		Celera
Cytogenetic Map	19	q13.31	NCBI
HuRef	19	41,410,882 - 41,436,836 (-)	NCBI		HuRef
CHM1_1	19	44,980,378 - 45,006,472 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	47,300,104 - 47,326,030 (-)	NCBI		T2T-CHM13v2.0

Zfp180
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	23,781,303 - 23,807,134 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	23,781,349 - 23,807,138 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	24,081,877 - 24,107,709 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	24,081,924 - 24,107,713 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	24,866,963 - 24,892,234 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	23,790,684 - 23,816,458 (+)	NCBI		MGSCv36	mm8
Celera	7	18,703,841 - 18,730,570 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	10.27	NCBI

Znf180
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955555	1,733,657 - 1,749,131 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF180
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	50,630,869 - 50,665,834 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	52,508,239 - 52,536,532 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	41,427,334 - 41,451,719 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	50,032,526 - 50,056,782 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	50,032,526 - 50,056,782 (-)	Ensembl			panPan2	panpan1.1

ZNF180
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	110,832,022 - 110,848,092 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	110,666,422 - 110,847,697 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	110,312,926 - 110,330,428 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	111,394,584 - 111,412,403 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	111,394,627 - 111,412,959 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	111,036,092 - 111,053,848 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	110,668,859 - 110,686,335 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	111,538,301 - 111,555,841 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf180
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	16,906,077 - 16,927,844 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	1,257,781 - 1,273,400 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	1,255,139 - 1,275,164 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF180
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	50,987,467 - 51,008,479 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	50,987,466 - 51,008,492 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	46,842,195 - 46,863,892 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF180
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	37,932,745 - 37,955,742 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	37,933,500 - 37,955,708 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	17,491,860 - 17,514,826 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf180
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	1,502,444 - 1,524,926 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624907	1,502,835 - 1,525,038 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf180
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	170,606,205 - 170,622,805 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp180
90 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	491
Count of miRNA genes:	253
Interacting mature miRNAs:	302
Transcripts:	ENSRNOT00000026077
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat

Markers in Region

D1Wox64

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	79,652,458 - 79,652,616 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	80,920,763 - 80,920,920	NCBI	Rnor6.0
Rnor_5.0	1	82,186,020 - 82,186,177	UniSTS	Rnor5.0
RGSC_v3.4	1	79,305,933 - 79,306,090	UniSTS	RGSC3.4
Celera	1	74,108,421 - 74,108,576	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH131120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	79,672,348 - 79,672,544 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	69,380,865 - 69,381,070 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	71,826,475 - 71,826,679	NCBI	Rnor6.0
Rnor_6.0	1	80,939,650 - 80,939,845	NCBI	Rnor6.0
Rnor_5.0	10	71,735,940 - 71,736,144	UniSTS	Rnor5.0
Rnor_5.0	1	82,204,907 - 82,205,102	UniSTS	Rnor5.0
RGSC_v3.4	1	79,325,823 - 79,326,018	UniSTS	RGSC3.4
RGSC_v3.4	10	72,782,871 - 72,783,075	UniSTS	RGSC3.4
Celera	10	68,307,916 - 68,308,120	UniSTS
Celera	1	74,128,309 - 74,128,504	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_144757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN540274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U41164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026077 ⟹ ENSRNOP00000026077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	88,780,342 - 88,800,627 (+)	Ensembl
mRatBN7.2 Ensembl	1	79,652,441 - 79,672,727 (+)	Ensembl
Rnor_6.0 Ensembl	1	80,920,747 - 80,940,040 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111936 ⟹ ENSRNOP00000082065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	88,782,100 - 88,800,627 (+)	Ensembl
mRatBN7.2 Ensembl	1	79,660,834 - 79,672,733 (+)	Ensembl

RefSeq Acc Id:

NM_001271280 ⟹ NP_001258209

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	88,780,342 - 88,800,637 (+)	NCBI
mRatBN7.2	1	79,652,441 - 79,672,737 (+)	NCBI
Rnor_6.0	1	80,920,745 - 80,940,038 (+)	NCBI
Rnor_5.0	1	82,186,002 - 82,205,295 (+)	NCBI
Celera	1	74,108,403 - 74,128,697 (+)	NCBI

Sequence:

show sequence

ACTTCCGGGTTTAGCCGGCAGCGCAGCCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT
GTGAGTGTGTGTGTGTATGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTATGTGTGTGAAGGC
GCCTTCAGTGGCCCGGCTTTGTGGCTGGGCTCAGTCTGCACGGAGCGACCTAGCGGATGCTGAC
TCGAAGTGGAGGCCAGACCCCGGCCACTCGAATCATGTCGGATGTGCTTCAGGATCGGGGCAGG
AAGCGGTGAGCCCCATTTCGTTCTGACGTTGAGTCGTCAGCGGCTCAGACCCGCCCCAGCCCAC
ACCAAGGGCTCTCGGACCTGCAGCTTGGCACCACGCCACACCCGGAGGGGACCATGGAGCAGCA
AGATGATGAGTCCCCGGAGACCCTGCAGGCCTGTGTGGAGAACTTTGTTCTACCCCAAGAGATG
ATCATCGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCTTGCCTCAGGAGAGCACAGACT
TCAAGATTGTGACTGTGGACCTCACGGAGGAGGGACAGAGCACTTGGAGCAAGGCCCAGAGAAC
CCCAGAGAGACCTGTGACCCTGGCAGGCCCTGGAAGGGACCTGTGGGATTCGACAGCTGTACAC
AGAACAGAAGAAACAACCTCAAAGCAGACCGTCTTTGATGAAGAACCATCCCATGGATCGAAGC
CAGAGGTGTTGGCAAGAGATGATCCTTGGCTTTCTTCATGTGAGGAGCAGTTGGAGAAACAACA
GGACAAGCAAGAGGAGGGGGTCTTGACCCAGGGTAGTGCTGGTCCTCCCGAGACTGTCTATGGG
GATCCTGGCTTTGACAGGAGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCTCTCA
GAAACCATTTTCATAAACAAGCGTCACATGTTAAAAAGTTACATGGTGATGTTGCAAATAGTCA
CCAACAGATCAACAACAATGCGGATTTCTTTGAAGATGACAAATCTGGGAAAGTTCCTCAGAGT
CTTCATCCCACTCAGTGTATAAGAACCCCGAAAGGAAAGAAAGCCTGTGAATTTAATGGTCGTG
TTCAACCCTTTGGCCAAGGTGTGCCCCTAAATCTAAATCAAAAAGTTCATTTGGAAGGTAAAAG
CTTTGGCTTTAAAGGGCGCGGGCAAGTTTTGAACCGTAACATAGTCCTCAATGAGCAACAGAAG
CTTCTCATTAAAGAAGGCCAGTATAAATGTAGCAAAACCGCCCCAAGTCCGTCTCTTCCCCAAA
ACCTGAGAAACTACTCTGAGGAGAAACGCTTTGAATGTAAGTACTGTGGCAAGTCCTTCAGCTG
GAGCTCCCATCTCATTGCTCACCAAAGAACCCATACGGGGGAAAAGCCGTACAAATGCAACCTG
TGTGGGAAGTTCTTCACCCGGAGCTCACACGTCGTTTCTCATCAGAGGATTCATACTGGAGAGA
AACCATACAGGTGCAATCTGTGTGGGAAGTCTTTCACCCAGAGGTATGTGCTCGTGGTGCATCA
AAGAACTCACACTGGCGAGCGTCCTTATGAATGCAACCAGTGTGGGAAGTCGTTCCGCCAGAGC
TACAAACTCATTGCGCATCAAAGAACCCACACAGGAGAGAAGCCGTACGAATGCACCCAGTGTG
GGAAGTCATTCATCCAGAGTTACAAGCTCATCGCGCATCAGAAAATTCACTCTGGAGAAAAACC
TTATGAGTGCAGTCACTGTGGCAAGTCCTTCAGCCAAAGCTATAAGCTTGTTGCCCATCAGAGG
ACTCACACAGGAGAGAAACCCTTCGAGTGTAACTACTGTGGGAAATCATTCAGCTGGAGCTCCC
AGCTGGTGTCTCATCAAAGAACCCACACGGGAGAGAAGCCTTACGAGTGTAACGAGTGTGGGAA
ATCATTCAATCGCAGCTCACACCTTGTCATGCACCAGAGAACTCATACTGGAGAGAAGCCGTAT
CAGTGCAAGCAGTGCGGGAAATCTTTCAGTCAGAGTTACGTTCTTGTCGTTCACCAGAGGACAC
ACACTGGGGAAAAGCCCTACGAGTGTGGCCAGTGTGGGAAGACATTCCGGCAGAGCTCCTGCTT
TACCCAGCATCAGAGGACTCACACCGGAGAGAAGCCCTATGAGTGTAATCAGTGTGGGAAGACC
TTCAGCCTAAGTGCCCGGCTTATCGTCCACCAGCGAACCCACACTGGGGAAAAGCCCTACAAAT
GCAGCCAGTGTGGCAAAGCCTTTATTAGCAGTTCTAAGCGCAGTAGGCACCAGGCTACTCACAG
CGAGGAGTCCTGCAAGTCCTGACCAGTTGAGAGTCTGAGCTGGAGTTGACTCCTGTCAGTCCAA
TCCTCTGAAGTTCCGTCTGAAGGAATGCACTTGACCAGAAGTGTCAGTGTGAGAAGAATGCACA
CAGGCCTTTCCTCACCCCGTGTCAGTGACAGAAAGGAGTAAGTAAGGCCTTCGGTTTGGCAGAT
GTGGATAAGAGGTCCCTGTAGAAGAAAAGCTGTTACACCCTGGCAGTGGCGCGTACTAGGATGA
CTGCAGGCATCGTCCCTAAGCCAATCTCAAAAGGCCACCTTTAACTGTCAGAAATCGTTTCCCA
AAGCACTCTGTGTACAGAGAAGGCAGAAGCTAGACTTAGAAAAACTGAATGCTAGATCAAATAC
TGCAAGCTTAGTGCAGAAGCCCTCTTGTTGGTGAGTTCGGCCTGGTCCTTGAGAGCACAGCTTC
TCTGTTGCAAAGCTGGCACCCTGTAGATTTCGTTCAGGAGGTGTGCATTCTAAATGCTCTTACT
TAGGGAAGTTAACTGCTGGCCAGCAGCTTTGCTCTCCTCCTGCTGGCTCTTTTCCTTCATGCTA
CTAGGTGGCTAAGCCACGACCTCCCGCCTTATCCCCCCGTGCAGAGTCCTCATACCTACTCACT
TCAGGCAGGTGAGCCATTCGATCCCTCATTTATGCAGGCTTAACCAGTCAGGTTCCAGTCATAG
CCAAACGTAAGCTCACTTCGGAGTACCCTACTGCTCTTCAAAGGAGCTGCTTTTCTATCGCAAA
GATTTCTCTTATGCTGTCCTTACTAGTCATTCCGTGCCATCAGGAGACAACATAGGAGTCACTG
CCTTAGAGTGACAGGTGGCCATTGAGTTGTCGGGGCCCTAGTCTGCTAAACCAAGCTCATCTGA
GCCAAGGAATGGACTCCCTTGTCCTCAAAGCCCCCTACAGTATTGCTGTGGATGCTGGCCATGA
GCTGGAAGGGTCAGGAAATCCACAAGCAGGGTTAAGCTTGGACCAGCATGGAGGTGAACCTGTG
CTAAAAACCCATGACTAGTGAGGCTGAGTCAAGAGGCTTGTTCAAGCCAGCCTGTGTTACATAG
CAAAACTGTCTTGAAAGAAAGAGAAAGAAAAAGAAAGAAAACAAACTCGTCCTATGTGTACTCC
TACATACATACTAAACGTTCGTTCTTTTCCCTGAAGAAAGAAAGCACTCAGATCCTAGTCTCAG
AGAACCTAATTCGAAAACCAATGGCCTTTCCTAAGAGACTTACGTCAACCGTTGACTGGCGGAT
GTGCTGTGGTGACTCAACTTAGACCTTACGTTGGATCAGGGTATTTGACCATGTCAGTCTGCCT
AGTTGCCCTGATTGGTAGTTTGTTACTTGTTTTATACACTTCTGTTAAATGTGAAGATTTTCTA
CAACTAAGGCAAATGGCCAGTGGAAATCAAACACATGTCAAGAGCATAGAAACTCTGGAACCTC
CTTGAGAAAGTGTTTATGTATAGTGTGAAGTTGAAAAGGGATACTAAGCTATTTATTGATACCG
TTGTTTATTTGTTATCTCTCCGAGATGCATGTTGTGCTATATAACATGGTACAAGGAATAAAAA
TTTATCTGAAGCAAAAAAGTAA

hide sequence

RefSeq Acc Id:

NM_144757 ⟹ NP_653358

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	88,780,342 - 88,800,637 (+)	NCBI
mRatBN7.2	1	79,652,441 - 79,672,737 (+)	NCBI
Rnor_6.0	1	80,920,745 - 80,940,038 (+)	NCBI
Rnor_5.0	1	82,186,002 - 82,205,295 (+)	NCBI
RGSC_v3.4	1	79,305,915 - 79,326,207 (+)	RGD
Celera	1	74,108,403 - 74,128,697 (+)	NCBI

Sequence:

show sequence

ACTTCCGGGTTTAGCCGGCAGCGCAGCCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT
GTGAGTGTGTGTGTGTATGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTATGTGTGTGAAGGC
GCCTTCAGTGGCCCGGCTTTGTGGCTGGGCTCAGTCTGCACGGAGCGACCTAGCGGATGCTGAC
TCGAAGTGGAGGCCAGACCCCGGCCACTCGAATCATGTCGGATGTGCTTCAGGATCGGGGCAGG
AAGCGCTTGGCACCACGCCACACCCGGAGGGGACCATGGAGCAGCAAGATGATGAGTCCCCGGA
GACCCTGCAGGCCTGTGTGGAGAACTTTGTTCTACCCCAAGAGATGATCATCGAAGTGGAGGGA
GAAGATGCTGGGTCACTGGACATCTTGCCTCAGGAGAGCACAGACTTCAAGATTGTGACTGTGG
ACCTCACGGAGGAGGGACAGAGCACTTGGAGCAAGGCCCAGAGAACCCCAGAGAGACCTGTGAC
CCTGGCAGGCCCTGGAAGGGACCTGTGGGATTCGACAGCTGTACACAGAACAGAAGAAACAACC
TCAAAGCAGACCGTCTTTGATGAAGAACCATCCCATGGATCGAAGCCAGAGGTGTTGGCAAGAG
ATGATCCTTGGCTTTCTTCATGTGAGGAGCAGTTGGAGAAACAACAGGACAAGCAAGAGGAGGG
GGTCTTGACCCAGGGTAGTGCTGGTCCTCCCGAGACTGTCTATGGGGATCCTGGCTTTGACAGG
AGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCTCTCAGAAACCATTTTCATAAAC
AAGCGTCACATGTTAAAAAGTTACATGGTGATGTTGCAAATAGTCACCAACAGATCAACAACAA
TGCGGATTTCTTTGAAGATGACAAATCTGGGAAAGTTCCTCAGAGTCTTCATCCCACTCAGTGT
ATAAGAACCCCGAAAGGAAAGAAAGCCTGTGAATTTAATGGTCGTGTTCAACCCTTTGGCCAAG
GTGTGCCCCTAAATCTAAATCAAAAAGTTCATTTGGAAGGTAAAAGCTTTGGCTTTAAAGGGCG
CGGGCAAGTTTTGAACCGTAACATAGTCCTCAATGAGCAACAGAAGCTTCTCATTAAAGAAGGC
CAGTATAAATGTAGCAAAACCGCCCCAAGTCCGTCTCTTCCCCAAAACCTGAGAAACTACTCTG
AGGAGAAACGCTTTGAATGTAAGTACTGTGGCAAGTCCTTCAGCTGGAGCTCCCATCTCATTGC
TCACCAAAGAACCCATACGGGGGAAAAGCCGTACAAATGCAACCTGTGTGGGAAGTTCTTCACC
CGGAGCTCACACGTCGTTTCTCATCAGAGGATTCATACTGGAGAGAAACCATACAGGTGCAATC
TGTGTGGGAAGTCTTTCACCCAGAGGTATGTGCTCGTGGTGCATCAAAGAACTCACACTGGCGA
GCGTCCTTATGAATGCAACCAGTGTGGGAAGTCGTTCCGCCAGAGCTACAAACTCATTGCGCAT
CAAAGAACCCACACAGGAGAGAAGCCGTACGAATGCACCCAGTGTGGGAAGTCATTCATCCAGA
GTTACAAGCTCATCGCGCATCAGAAAATTCACTCTGGAGAAAAACCTTATGAGTGCAGTCACTG
TGGCAAGTCCTTCAGCCAAAGCTATAAGCTTGTTGCCCATCAGAGGACTCACACAGGAGAGAAA
CCCTTCGAGTGTAACTACTGTGGGAAATCATTCAGCTGGAGCTCCCAGCTGGTGTCTCATCAAA
GAACCCACACGGGAGAGAAGCCTTACGAGTGTAACGAGTGTGGGAAATCATTCAATCGCAGCTC
ACACCTTGTCATGCACCAGAGAACTCATACTGGAGAGAAGCCGTATCAGTGCAAGCAGTGCGGG
AAATCTTTCAGTCAGAGTTACGTTCTTGTCGTTCACCAGAGGACACACACTGGGGAAAAGCCCT
ACGAGTGTGGCCAGTGTGGGAAGACATTCCGGCAGAGCTCCTGCTTTACCCAGCATCAGAGGAC
TCACACCGGAGAGAAGCCCTATGAGTGTAATCAGTGTGGGAAGACCTTCAGCCTAAGTGCCCGG
CTTATCGTCCACCAGCGAACCCACACTGGGGAAAAGCCCTACAAATGCAGCCAGTGTGGCAAAG
CCTTTATTAGCAGTTCTAAGCGCAGTAGGCACCAGGCTACTCACAGCGAGGAGTCCTGCAAGTC
CTGACCAGTTGAGAGTCTGAGCTGGAGTTGACTCCTGTCAGTCCAATCCTCTGAAGTTCCGTCT
GAAGGAATGCACTTGACCAGAAGTGTCAGTGTGAGAAGAATGCACACAGGCCTTTCCTCACCCC
GTGTCAGTGACAGAAAGGAGTAAGTAAGGCCTTCGGTTTGGCAGATGTGGATAAGAGGTCCCTG
TAGAAGAAAAGCTGTTACACCCTGGCAGTGGCGCGTACTAGGATGACTGCAGGCATCGTCCCTA
AGCCAATCTCAAAAGGCCACCTTTAACTGTCAGAAATCGTTTCCCAAAGCACTCTGTGTACAGA
GAAGGCAGAAGCTAGACTTAGAAAAACTGAATGCTAGATCAAATACTGCAAGCTTAGTGCAGAA
GCCCTCTTGTTGGTGAGTTCGGCCTGGTCCTTGAGAGCACAGCTTCTCTGTTGCAAAGCTGGCA
CCCTGTAGATTTCGTTCAGGAGGTGTGCATTCTAAATGCTCTTACTTAGGGAAGTTAACTGCTG
GCCAGCAGCTTTGCTCTCCTCCTGCTGGCTCTTTTCCTTCATGCTACTAGGTGGCTAAGCCACG
ACCTCCCGCCTTATCCCCCCGTGCAGAGTCCTCATACCTACTCACTTCAGGCAGGTGAGCCATT
CGATCCCTCATTTATGCAGGCTTAACCAGTCAGGTTCCAGTCATAGCCAAACGTAAGCTCACTT
CGGAGTACCCTACTGCTCTTCAAAGGAGCTGCTTTTCTATCGCAAAGATTTCTCTTATGCTGTC
CTTACTAGTCATTCCGTGCCATCAGGAGACAACATAGGAGTCACTGCCTTAGAGTGACAGGTGG
CCATTGAGTTGTCGGGGCCCTAGTCTGCTAAACCAAGCTCATCTGAGCCAAGGAATGGACTCCC
TTGTCCTCAAAGCCCCCTACAGTATTGCTGTGGATGCTGGCCATGAGCTGGAAGGGTCAGGAAA
TCCACAAGCAGGGTTAAGCTTGGACCAGCATGGAGGTGAACCTGTGCTAAAAACCCATGACTAG
TGAGGCTGAGTCAAGAGGCTTGTTCAAGCCAGCCTGTGTTACATAGCAAAACTGTCTTGAAAGA
AAGAGAAAGAAAAAGAAAGAAAACAAACTCGTCCTATGTGTACTCCTACATACATACTAAACGT
TCGTTCTTTTCCCTGAAGAAAGAAAGCACTCAGATCCTAGTCTCAGAGAACCTAATTCGAAAAC
CAATGGCCTTTCCTAAGAGACTTACGTCAACCGTTGACTGGCGGATGTGCTGTGGTGACTCAAC
TTAGACCTTACGTTGGATCAGGGTATTTGACCATGTCAGTCTGCCTAGTTGCCCTGATTGGTAG
TTTGTTACTTGTTTTATACACTTCTGTTAAATGTGAAGATTTTCTACAACTAAGGCAAATGGCC
AGTGGAAATCAAACACATGTCAAGAGCATAGAAACTCTGGAACCTCCTTGAGAAAGTGTTTATG
TATAGTGTGAAGTTGAAAAGGGATACTAAGCTATTTATTGATACCGTTGTTTATTTGTTATCTC
TCCGAGATGCATGTTGTGCTATATAACATGGTACAAGGAATAAAAATTTATCTGAAGCAAAAAA
GTAA

hide sequence

RefSeq Acc Id:

XM_006228387 ⟹ XP_006228449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	88,780,723 - 88,800,633 (+)	NCBI
mRatBN7.2	1	79,652,845 - 79,672,737 (+)	NCBI
Rnor_6.0	1	80,921,105 - 80,940,038 (+)	NCBI
Rnor_5.0	1	82,186,002 - 82,205,295 (+)	NCBI

Sequence:

show sequence

GACGTTCACAGTGCTCGATATGCGCATGCGCAGGGTCTAGGCGGGAATCTGGACGCGTTAGTGT
CAGTGGCTGGGGTTCCTGTCTCAGTCCAGGACTCTGTCGCGGAGGGCTGTGAAGAGGTCACCGT
TGTACGCATGTGCGGATGATTGGCTGTGTGGTGGGACTTGTTAGGGACCGAGGATGTCCAGAAG
AATGGAAGACAGGGCTCAGGCATAGTTATTGGGGAGATAATTGAAAGGCCCCAGGGGACACTAA
AGTGCCTTGCGTTTTGGACAAAAGAGTTTTAGAAGAAGTGTTATCGCCACGAAGAGACAACGTG
GTGAGGCCTTTAAGCTTGGCACCACGCCACACCCGGAGGGGACCATGGAGCAGCAAGATGATGA
GTCCCCGGAGACCCTGCAGGCCTGTGTGGAGAACTTTGTTCTACCCCAAGAGATGATCATCGAA
GTGGAGGGAGAAGATGCTGGGTCACTGGACATCTTGCCTCAGGAGAGCACAGACTTCAAGATTG
TGACTGTGGACCTCACGGAGGAGGGACAGAGCACTTGGAGCAAGGCCCAGAGAACCCCAGAGAG
ACCTGTGACCCTGGCAGGCCCTGGAAGGGACCTGTGGGATTCGACAGCTGTACACAGAACAGAA
GAAACAACCTCAAAGCAGACCGTCTTTGATGAAGAACCATCCCATGGATCGAAGCCAGAGGTGT
TGGCAAGAGATGATCCTTGGCTTTCTTCATGTGAGGAGCAGTTGGAGAAACAACAGGACAAGCA
AGAGGAGGGGGTCTTGACCCAGGGTAGTGCTGGTCCTCCCGAGACTGTCTATGGGGATCCTGGC
TTTGACAGGAGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCTCTCAGAAACCATT
TTCATAAACAAGCGTCACATGTTAAAAAGTTACATGGTGATGTTGCAAATAGTCACCAACAGAT
CAACAACAATGCGGATTTCTTTGAAGATGACAAATCTGGGAAAGTTCCTCAGAGTCTTCATCCC
ACTCAGTGTATAAGAACCCCGAAAGGAAAGAAAGCCTGTGAATTTAATGGTCGTGTTCAACCCT
TTGGCCAAGGTGTGCCCCTAAATCTAAATCAAAAAGTTCATTTGGAAGGTAAAAGCTTTGGCTT
TAAAGGGCGCGGGCAAGTTTTGAACCGTAACATAGTCCTCAATGAGCAACAGAAGCTTCTCATT
AAAGAAGGCCAGTATAAATGTAGCAAAACCGCCCCAAGTCCGTCTCTTCCCCAAAACCTGAGAA
ACTACTCTGAGGAGAAACGCTTTGAATGTAAGTACTGTGGCAAGTCCTTCAGCTGGAGCTCCCA
TCTCATTGCTCACCAAAGAACCCATACGGGGGAAAAGCCGTACAAATGCAACCTGTGTGGGAAG
TTCTTCACCCGGAGCTCACACGTCGTTTCTCATCAGAGGATTCATACTGGAGAGAAACCATACA
GGTGCAATCTGTGTGGGAAGTCTTTCACCCAGAGGTATGTGCTCGTGGTGCATCAAAGAACTCA
CACTGGCGAGCGTCCTTATGAATGCAACCAGTGTGGGAAGTCGTTCCGCCAGAGCTACAAACTC
ATTGCGCATCAAAGAACCCACACAGGAGAGAAGCCGTACGAATGCACCCAGTGTGGGAAGTCAT
TCATCCAGAGTTACAAGCTCATCGCGCATCAGAAAATTCACTCTGGAGAAAAACCTTATGAGTG
CAGTCACTGTGGCAAGTCCTTCAGCCAAAGCTATAAGCTTGTTGCCCATCAGAGGACTCACACA
GGAGAGAAACCCTTCGAGTGTAACTACTGTGGGAAATCATTCAGCTGGAGCTCCCAGCTGGTGT
CTCATCAAAGAACCCACACGGGAGAGAAGCCTTACGAGTGTAACGAGTGTGGGAAATCATTCAA
TCGCAGCTCACACCTTGTCATGCACCAGAGAACTCATACTGGAGAGAAGCCGTATCAGTGCAAG
CAGTGCGGGAAATCTTTCAGTCAGAGTTACGTTCTTGTCGTTCACCAGAGGACACACACTGGGG
AAAAGCCCTACGAGTGTGGCCAGTGTGGGAAGACATTCCGGCAGAGCTCCTGCTTTACCCAGCA
TCAGAGGACTCACACCGGAGAGAAGCCCTATGAGTGTAATCAGTGTGGGAAGACCTTCAGCCTA
AGTGCCCGGCTTATCGTCCACCAGCGAACCCACACTGGGGAAAAGCCCTACAAATGCAGCCAGT
GTGGCAAAGCCTTTATTAGCAGTTCTAAGCGCAGTAGGCACCAGGCTACTCACAGCGAGGAGTC
CTGCAAGTCCTGACCAGTTGAGAGTCTGAGCTGGAGTTGACTCCTGTCAGTCCAATCCTCTGAA
GTTCCGTCTGAAGGAATGCACTTGACCAGAAGTGTCAGTGTGAGAAGAATGCACACAGGCCTTT
CCTCACCCCGTGTCAGTGACAGAAAGGAGTAAGTAAGGCCTTCGGTTTGGCAGATGTGGATAAG
AGGTCCCTGTAGAAGAAAAGCTGTTACACCCTGGCAGTGGCGCGTACTAGGATGACTGCAGGCA
TCGTCCCTAAGCCAATCTCAAAAGGCCACCTTTAACTGTCAGAAATCGTTTCCCAAAGCACTCT
GTGTACAGAGAAGGCAGAAGCTAGACTTAGAAAAACTGAATGCTAGATCAAATACTGCAAGCTT
AGTGCAGAAGCCCTCTTGTTGGTGAGTTCGGCCTGGTCCTTGAGAGCACAGCTTCTCTGTTGCA
AAGCTGGCACCCTGTAGATTTCGTTCAGGAGGTGTGCATTCTAAATGCTCTTACTTAGGGAAGT
TAACTGCTGGCCAGCAGCTTTGCTCTCCTCCTGCTGGCTCTTTTCCTTCATGCTACTAGGTGGC
TAAGCCACGACCTCCCGCCTTATCCCCCCGTGCAGAGTCCTCATACCTACTCACTTCAGGCAGG
TGAGCCATTCGATCCCTCATTTATGCAGGCTTAACCAGTCAGGTTCCAGTCATAGCCAAACGTA
AGCTCACTTCGGAGTACCCTACTGCTCTTCAAAGGAGCTGCTTTTCTATCGCAAAGATTTCTCT
TATGCTGTCCTTACTAGTCATTCCGTGCCATCAGGAGACAACATAGGAGTCACTGCCTTAGAGT
GACAGGTGGCCATTGAGTTGTCGGGGCCCTAGTCTGCTAAACCAAGCTCATCTGAGCCAAGGAA
TGGACTCCCTTGTCCTCAAAGCCCCCTACAGTATTGCTGTGGATGCTGGCCATGAGCTGGAAGG
GTCAGGAAATCCACAAGCAGGGTTAAGCTTGGACCAGCATGGAGGTGAACCTGTGCTAAAAACC
CATGACTAGTGAGGCTGAGTCAAGAGGCTTGTTCAAGCCAGCCTGTGTTACATAGCAAAACTGT
CTTGAAAGAAAGAGAAAGAAAAAGAAAGAAAACAAACTCGTCCTATGTGTACTCCTACATACAT
ACTAAACGTTCGTTCTTTTCCCTGAAGAAAGAAAGCACTCAGATCCTAGTCTCAGAGAACCTAA
TTCGAAAACCAATGGCCTTTCCTAAGAGACTTACGTCAACCGTTGACTGGCGGATGTGCTGTGG
TGACTCAACTTAGACCTTACGTTGGATCAGGGTATTTGACCATGTCAGTCTGCCTAGTTGCCCT
GATTGGTAGTTTGTTACTTGTTTTATACACTTCTGTTAAATGTGAAGATTTTCTACAACTAAGG
CAAATGGCCAGTGGAAATCAAACACATGTCAAGAGCATAGAAACTCTGGAACCTCCTTGAGAAA
GTGTTTATGTATAGTGTGAAGTTGAAAAGGGATACTAAGCTATTTATTGATACCGTTGTTTATT
TGTTATCTCTCCGAGATGCATGTTGTGCTATATAACATGGTACAAGGAATAAAAATTTATCTGA
AGCAAAAAAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001258209	(Get FASTA)	NCBI Sequence Viewer
	NP_653358	(Get FASTA)	NCBI Sequence Viewer
	XP_006228449	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB61447	(Get FASTA)	NCBI Sequence Viewer
	EDM08120	(Get FASTA)	NCBI Sequence Viewer
	EDM08121	(Get FASTA)	NCBI Sequence Viewer
	EDM08122	(Get FASTA)	NCBI Sequence Viewer
	EDM08123	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026077
	ENSRNOP00000026077.2
	ENSRNOP00000082065
	ENSRNOP00000082065.2

RefSeq Acc Id:

NP_653358 ⟸ NM_144757

- Peptide Label:

isoform 1 precursor

- Sequence:

show sequence

MCECVCVCVCACVCVCVCMCVKAPSVARLCGWAQSARSDLADADSKWRPDPGHSNHVGCASGSG
QEALGTTPHPEGTMEQQDDESPETLQACVENFVLPQEMIIEVEGEDAGSLDILPQESTDFKIVT
VDLTEEGQSTWSKAQRTPERPVTLAGPGRDLWDSTAVHRTEETTSKQTVFDEEPSHGSKPEVLA
RDDPWLSSCEEQLEKQQDKQEEGVLTQGSAGPPETVYGDPGFDRSCLSTSRPSFPMIPLRNHFH
KQASHVKKLHGDVANSHQQINNNADFFEDDKSGKVPQSLHPTQCIRTPKGKKACEFNGRVQPFG
QGVPLNLNQKVHLEGKSFGFKGRGQVLNRNIVLNEQQKLLIKEGQYKCSKTAPSPSLPQNLRNY
SEEKRFECKYCGKSFSWSSHLIAHQRTHTGEKPYKCNLCGKFFTRSSHVVSHQRIHTGEKPYRC
NLCGKSFTQRYVLVVHQRTHTGERPYECNQCGKSFRQSYKLIAHQRTHTGEKPYECTQCGKSFI
QSYKLIAHQKIHSGEKPYECSHCGKSFSQSYKLVAHQRTHTGEKPFECNYCGKSFSWSSQLVSH
QRTHTGEKPYECNECGKSFNRSSHLVMHQRTHTGEKPYQCKQCGKSFSQSYVLVVHQRTHTGEK
PYECGQCGKTFRQSSCFTQHQRTHTGEKPYECNQCGKTFSLSARLIVHQRTHTGEKPYKCSQCG
KAFISSSKRSRHQATHSEESCKS

hide sequence

RefSeq Acc Id:	NP_001258209 ⟸ NM_001271280
- Peptide Label:	isoform 2
- UniProtKB:	Q62886 (UniProtKB/TrEMBL), A6J8W2 (UniProtKB/TrEMBL), A6J8W3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQQDDESPETLQACVENFVLPQEMIIEVEGEDAGSLDILPQESTDFKIVTVDLTEEGQSTWSK AQRTPERPVTLAGPGRDLWDSTAVHRTEETTSKQTVFDEEPSHGSKPEVLARDDPWLSSCEEQL EKQQDKQEEGVLTQGSAGPPETVYGDPGFDRSCLSTSRPSFPMIPLRNHFHKQASHVKKLHGDV ANSHQQINNNADFFEDDKSGKVPQSLHPTQCIRTPKGKKACEFNGRVQPFGQGVPLNLNQKVHL EGKSFGFKGRGQVLNRNIVLNEQQKLLIKEGQYKCSKTAPSPSLPQNLRNYSEEKRFECKYCGK SFSWSSHLIAHQRTHTGEKPYKCNLCGKFFTRSSHVVSHQRIHTGEKPYRCNLCGKSFTQRYVL VVHQRTHTGERPYECNQCGKSFRQSYKLIAHQRTHTGEKPYECTQCGKSFIQSYKLIAHQKIHS GEKPYECSHCGKSFSQSYKLVAHQRTHTGEKPFECNYCGKSFSWSSQLVSHQRTHTGEKPYECN ECGKSFNRSSHLVMHQRTHTGEKPYQCKQCGKSFSQSYVLVVHQRTHTGEKPYECGQCGKTFRQ SSCFTQHQRTHTGEKPYECNQCGKTFSLSARLIVHQRTHTGEKPYKCSQCGKAFISSSKRSRHQ ATHSEESCKS hide sequence

RefSeq Acc Id:	XP_006228449 ⟸ XM_006228387
- Peptide Label:	isoform X1
- UniProtKB:	Q62886 (UniProtKB/TrEMBL), A6J8W2 (UniProtKB/TrEMBL), A6J8W3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQQDDESPETLQACVENFVLPQEMIIEVEGEDAGSLDILPQESTDFKIVTVDLTEEGQSTWSK AQRTPERPVTLAGPGRDLWDSTAVHRTEETTSKQTVFDEEPSHGSKPEVLARDDPWLSSCEEQL EKQQDKQEEGVLTQGSAGPPETVYGDPGFDRSCLSTSRPSFPMIPLRNHFHKQASHVKKLHGDV ANSHQQINNNADFFEDDKSGKVPQSLHPTQCIRTPKGKKACEFNGRVQPFGQGVPLNLNQKVHL EGKSFGFKGRGQVLNRNIVLNEQQKLLIKEGQYKCSKTAPSPSLPQNLRNYSEEKRFECKYCGK SFSWSSHLIAHQRTHTGEKPYKCNLCGKFFTRSSHVVSHQRIHTGEKPYRCNLCGKSFTQRYVL VVHQRTHTGERPYECNQCGKSFRQSYKLIAHQRTHTGEKPYECTQCGKSFIQSYKLIAHQKIHS GEKPYECSHCGKSFSQSYKLVAHQRTHTGEKPFECNYCGKSFSWSSQLVSHQRTHTGEKPYECN ECGKSFNRSSHLVMHQRTHTGEKPYQCKQCGKSFSQSYVLVVHQRTHTGEKPYECGQCGKTFRQ SSCFTQHQRTHTGEKPYECNQCGKTFSLSARLIVHQRTHTGEKPYKCSQCGKAFISSSKRSRHQ ATHSEESCKS hide sequence

Ensembl Acc Id:

ENSRNOP00000026077 ⟸ ENSRNOT00000026077

Ensembl Acc Id:

ENSRNOP00000082065 ⟸ ENSRNOT00000111936

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62886-F1-model_v2	AlphaFold	Q62886	1-650	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689787

Promoter ID:

EPDNEW_R312

Type:

multiple initiation site

Name:

Zfp180_1

Description:

zinc finger protein 180

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	80,920,745 - 80,920,805	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631380	AgrOrtholog
BioCyc Gene	G2FUF-60476	BioCyc
Ensembl Genes	ENSRNOG00000029336	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026077	ENTREZGENE
	ENSRNOT00000026077.6	UniProtKB/TrEMBL
	ENSRNOT00000111936	ENTREZGENE
	ENSRNOT00000111936.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Krueppel_C2H2_ZnFinger	UniProtKB/TrEMBL
	Znf-C2H2_ZIC1-5/GLI1-3-like	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:246279	UniProtKB/TrEMBL
NCBI Gene	246279	ENTREZGENE
PANTHER	IP01015P-RELATED	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_15	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp180	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029336	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I5ZTC7_RAT	UniProtKB/TrEMBL
	A6J8W1_RAT	UniProtKB/TrEMBL
	A6J8W2	ENTREZGENE, UniProtKB/TrEMBL
	A6J8W3	ENTREZGENE, UniProtKB/TrEMBL
	A6J8W4_RAT	UniProtKB/TrEMBL
	Q62886	ENTREZGENE
UniProt Secondary	Q62886	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Zfp180	zinc finger protein 180	rKr1	Cys2/His2 zinc finger protein (rKr1)	Symbol and Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	highly expressed in oligodendrocytes and motor neurons of the brainstem and spinal cord	633851

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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