Spats1 (spermatogenesis associated, serine-rich 1)

Gene: Spats1 (spermatogenesis associated, serine-rich 1) Rattus norvegicus

Analyze

Symbol:

Spats1

Name:

spermatogenesis associated, serine-rich 1

RGD ID:

631367

Description:

Orthologous to human SPATS1 (spermatogenesis associated serine rich 1); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

spermatogenesis-associated serine-rich protein 1; spermatogenic serine-rich protein 1; Srsp1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	23,024,129 - 23,059,734 (+)	NCBI		GRCr8
mRatBN7.2	9	15,527,179 - 15,562,286 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,527,142 - 15,562,280 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,113,815 - 24,148,842 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,176,496 - 29,211,526 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	27,477,251 - 27,512,287 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,911,950 - 17,947,101 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,911,944 - 17,946,797 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,800,670 - 16,835,508 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,127,891 - 11,162,968 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,125,212 - 11,160,287 (+)	NCBI
Celera	9	13,270,533 - 13,305,799 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

6-propyl-2-thiouracil (EXP)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dimethylarsinic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

indometacin (ISO)

manganese(II) chloride (EXP)

methylarsonic acid (ISO)

N-methyl-4-phenylpyridinium (EXP)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification and characterization of SRSP1, a rat gene differentially expressed during spermatogenesis and coding for a serine stretch-containing protein.	Geisinger A, etal., Cytogenet Genome Res 2002;98(4):249-54.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16778019	PMID:19948251

Genomics

Comparative Map Data

Spats1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	23,024,129 - 23,059,734 (+)	NCBI		GRCr8
mRatBN7.2	9	15,527,179 - 15,562,286 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,527,142 - 15,562,280 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,113,815 - 24,148,842 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,176,496 - 29,211,526 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	27,477,251 - 27,512,287 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,911,950 - 17,947,101 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,911,944 - 17,946,797 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,800,670 - 16,835,508 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,127,891 - 11,162,968 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	11,125,212 - 11,160,287 (+)	NCBI
Celera	9	13,270,533 - 13,305,799 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

SPATS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	44,342,650 - 44,380,179 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	44,342,650 - 44,380,179 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	44,310,387 - 44,347,916 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	44,418,464 - 44,452,882 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	44,418,463 - 44,452,881	NCBI
Celera	6	45,863,578 - 45,898,081 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	44,033,017 - 44,067,521 (+)	NCBI		HuRef
CHM1_1	6	44,314,056 - 44,348,542 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	44,177,430 - 44,214,924 (+)	NCBI		T2T-CHM13v2.0

Spats1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	45,754,156 - 45,785,864 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	45,751,504 - 45,786,341 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	45,443,230 - 45,475,108 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	45,440,578 - 45,475,415 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	45,585,886 - 45,611,887 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	44,912,518 - 44,938,519 (-)	NCBI		MGSCv36	mm8
Celera	17	48,881,249 - 48,907,505 (-)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI
cM Map	17	22.44	NCBI

Spats1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,952,485 - 9,984,305 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,952,360 - 9,984,392 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPATS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,846,173 - 58,884,257 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,716,210 - 54,754,291 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,937,856 - 43,976,087 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	45,221,421 - 45,255,509 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	45,221,708 - 45,258,557 (+)	Ensembl	panpan1.1		panPan2

SPATS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,749,105 - 12,773,150 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,718,842 - 12,773,886 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,777,559 - 12,801,030 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	13,235,281 - 13,259,175 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	13,235,036 - 13,261,172 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,760,837 - 12,784,708 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,848,735 - 12,872,472 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,942,610 - 12,966,508 (+)	NCBI		UU_Cfam_GSD_1.0

Spats1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	48,216,705 - 48,248,809 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	15,711,722 - 15,743,284 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	15,711,630 - 15,743,541 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	39,352,652 - 39,384,194 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	39,352,543 - 39,381,984 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	45,288,676 - 45,303,530 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	27,795,644 - 27,828,874 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	44,393,514 - 44,426,854 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spats1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	15,520,033 - 15,537,486 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	15,520,033 - 15,541,317 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spats1
274 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	38
Count of miRNA genes:	34
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000045763
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											7
Low	1	5	21	5	19	5	4	4	25	10	14	11	4
Below cutoff	2	28	16	16		16	4	7	37	5	18		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_181376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY157978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ767345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000045763 ⟹ ENSRNOP00000038995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	15,527,142 - 15,562,280 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,920,677 - 17,946,797 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080940 ⟹ ENSRNOP00000074772

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	15,527,142 - 15,552,857 (+)	Ensembl
Rnor_6.0 Ensembl	9	17,911,944 - 17,937,568 (+)	Ensembl

RefSeq Acc Id:

NM_181376 ⟹ NP_852041

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,609 - 23,059,734 (+)	NCBI
mRatBN7.2	9	15,527,179 - 15,562,286 (+)	NCBI
Rnor_6.0	9	17,911,950 - 17,947,101 (+)	NCBI
Rnor_5.0	9	16,800,670 - 16,835,508 (+)	NCBI
RGSC_v3.4	9	11,127,891 - 11,162,968 (+)	RGD
Celera	9	13,270,533 - 13,305,799 (+)	RGD

Sequence:

show sequence

CGCTTTGCCTCCCGGCATTCGGCAGTTCCGCTGCCCGTTGGTGCGATCATCTGGGCCGTATCCG
CAATGGAAGCGGCACGAGATGCCCAGCACAGTGATGTTCTAGAATCTAAAGGTTGCTTGGCCAG
TAGGACGTCCTCTCATCAAAACAGAAGGGCCAGCCTCTCTTCTGATGGAACTGGTCTGAGGGTC
ACTGATGCCCCAGGCCTCCCCAGGGTGATGACTCCCTCTGACACTGCTTCGGGGCTGGGTCAGA
AGACCTCCTCCACTTCATCCTCCTCCTCTTCATCCTCCTCCTCCTCTCCCTCCTCCTCCTCCTC
TGCCCAGGCTAATCGGTCCTTGAAAGTCTCACTGCCTGAAATCCAGAAGGAAAAATATCCCGAG
GAATTCAGCCTGCTCAAGTCACAGACAACAGATGGGCAGCGTCCTGAGTGGACATTTTATCCAA
GGTTCAGCAGCAACATCCACACCTACCATGTTGGAAAGCAGTGTTTCTTCAATGGGGTCTTCCG
GGGCAACAGGAAGTCTGTGGCAGAGAGGACAGTGGACAAGAGCCTTGGGAAGAAGAAATACGAT
ATTGATCCCAGAAATGGAATCCCCAAATTGACACCAGGAGATAATCCATACATGTTCCCAGAAC
AGAGTAAAGAGTTCTTCAAAGCTGGGGCAACTCTGCCGCCAGTGAACTTCTCACTGGGACCTTA
TGAGAAAAAATTCGACACCTTTATCCCACTTGAGCCACTTCCACAAATTCCCAATCTGCCTTTC
TGGGAGAAGGAAAAAGCCAATAATTTGAAGAACGAGATAAAAGAAGTTGAGGATCTTGACAACT
GGCAGGCGCCGATGCCCTTCCTCCACGGTTTTCTCTCCACTGCTAATCGAACAATAACTACCTG
TGATCAGAAAGTCTAGAAATCTAGTAGTTGTTCAGTCCCACAAGGCTGCATGTTTCATCTGGTC
TTCAGTATATGCTGCAATCCAGAAGTGGGCTCTAAAGTCAGAAGGAATGGATGTGCTAGCAAGG
TGAAGGCAAACAAAGAACAAAAGCTTCCTTCTTCTTATATAGACGTCCAGCTGAAGGTGTGGCT
CATATTAAAGGTATGTTTTTCCTGACTCAAGATTTGGATCAAAGACTGTCTTCCACCTCAAGAT
TCAAATGAAAGGTCTGTCTTCCCACCTCAAGATTCGGATTAAAGTTGTGTCTTCCTACCTCAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063266851 ⟹ XP_063122921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,553 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266852 ⟹ XP_063122922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,558 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266853 ⟹ XP_063122923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,558 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266854 ⟹ XP_063122924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,558 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266855 ⟹ XP_063122925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,513 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266856 ⟹ XP_063122926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,558 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266857 ⟹ XP_063122927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,129 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266858 ⟹ XP_063122928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,558 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266859 ⟹ XP_063122929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,513 - 23,050,289 (+)	NCBI

RefSeq Acc Id:

XM_063266860 ⟹ XP_063122930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	23,024,513 - 23,059,734 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_852041	(Get FASTA)	NCBI Sequence Viewer
	XP_063122921	(Get FASTA)	NCBI Sequence Viewer
	XP_063122922	(Get FASTA)	NCBI Sequence Viewer
	XP_063122923	(Get FASTA)	NCBI Sequence Viewer
	XP_063122924	(Get FASTA)	NCBI Sequence Viewer
	XP_063122925	(Get FASTA)	NCBI Sequence Viewer
	XP_063122926	(Get FASTA)	NCBI Sequence Viewer
	XP_063122927	(Get FASTA)	NCBI Sequence Viewer
	XP_063122928	(Get FASTA)	NCBI Sequence Viewer
	XP_063122929	(Get FASTA)	NCBI Sequence Viewer
	XP_063122930	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAN41641	(Get FASTA)	NCBI Sequence Viewer
	EDM18729	(Get FASTA)	NCBI Sequence Viewer
	EDM18730	(Get FASTA)	NCBI Sequence Viewer
	EDM18731	(Get FASTA)	NCBI Sequence Viewer
	EDM18732	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038995
	ENSRNOP00000038995.5
	ENSRNOP00000074772.2
GenBank Protein	Q811V6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_852041 ⟸ NM_181376

- UniProtKB:

Q811V6 (UniProtKB/Swiss-Prot), F1LSS6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAARDAQHSDVLESKGCLASRTSSHQNRRASLSSDGTGLRVTDAPGLPRVMTPSDTASGLGQK
TSSTSSSSSSSSSSSPSSSSSAQANRSLKVSLPEIQKEKYPEEFSLLKSQTTDGQRPEWTFYPR
FSSNIHTYHVGKQCFFNGVFRGNRKSVAERTVDKSLGKKKYDIDPRNGIPKLTPGDNPYMFPEQ
SKEFFKAGATLPPVNFSLGPYEKKFDTFIPLEPLPQIPNLPFWEKEKANNLKNEIKEVEDLDNW
QAPMPFLHGFLSTANRTITTCDQKV

hide sequence

RefSeq Acc Id:

ENSRNOP00000038995 ⟸ ENSRNOT00000045763

RefSeq Acc Id:

ENSRNOP00000074772 ⟸ ENSRNOT00000080940

RefSeq Acc Id:	XP_063122927 ⟸ XM_063266857
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063122930 ⟸ XM_063266860
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063122929 ⟸ XM_063266859
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063122925 ⟸ XM_063266855
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063122921 ⟸ XM_063266851
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063122926 ⟸ XM_063266856
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063122928 ⟸ XM_063266858
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063122923 ⟸ XM_063266853
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063122924 ⟸ XM_063266854
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063122922 ⟸ XM_063266852
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q811V6-F1-model_v2	AlphaFold	Q811V6	1-281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696551

Promoter ID:

EPDNEW_R7071

Type:

initiation region

Name:

Spats1_1

Description:

spermatogenesis associated, serine-rich 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	17,911,966 - 17,912,026	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631367	AgrOrtholog
BioCyc Gene	G2FUF-28162	BioCyc
Ensembl Genes	ENSRNOG00000019963	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045763	ENTREZGENE
	ENSRNOT00000045763.5	UniProtKB/TrEMBL
	ENSRNOT00000080940.2	UniProtKB/TrEMBL
InterPro	SASRP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:301255	UniProtKB/Swiss-Prot
NCBI Gene	301255	ENTREZGENE
PANTHER	PTHR35845	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SASRP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Spats1	PhenoGen
RatGTEx	ENSRNOG00000019963	RatGTEx
UniProt	A0A0G2K8X4_RAT	UniProtKB/TrEMBL
	A6JJ00_RAT	UniProtKB/TrEMBL
	A6JJ01_RAT	UniProtKB/TrEMBL
	A6JJ02_RAT	UniProtKB/TrEMBL
	A6JJ03_RAT	UniProtKB/TrEMBL
	F1LSS6	ENTREZGENE, UniProtKB/TrEMBL
	Q811V6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-11	Spats1	spermatogenesis associated, serine-rich 1	Srsp1	spermatogenic serine-rich protein 1	Symbol and Name updated to reflect Human and Mouse nomenclature	625702	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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