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Gene: Sorbs3 (sorbin and SH3 domain containing 3) Rattus norvegicus

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Symbol:

Sorbs3

Name:

sorbin and SH3 domain containing 3

RGD ID:

628900

Description:

Predicted to enable vinculin binding activity. Predicted to be involved in positive regulation of stress fiber assembly. Predicted to act upstream of or within cell-substrate adhesion; negative regulation of transcription by RNA polymerase II; and positive regulation of MAPK cascade. Predicted to be located in cytoplasm; focal adhesion; and nucleus. Orthologous to human SORBS3 (sorbin and SH3 domain containing 3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC94509; SH3 domain protein 4; Sh3d4; vinexin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,662,639 - 51,699,161 (-)	NCBI		GRCr8
mRatBN7.2	15	45,252,921 - 45,284,758 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,253,379 - 45,284,758 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	49,371,228 - 49,402,614 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,482,720 - 50,514,102 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,342,042 - 47,373,427 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	51,859,004 - 51,895,707 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,859,462 - 51,890,832 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,585,158 - 55,618,036 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,580,018 - 50,611,107 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,601,396 - 50,620,517 (-)	NCBI
Celera	15	44,932,832 - 44,964,037 (-)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Conotruncal Cardiac Defects (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldrin (ISO)

ammonium chloride (EXP)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroethene (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

diethylstilbestrol (ISO)

disodium selenite (ISO)

elemental selenium (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

fenamidone (ISO)

fenvalerate (EXP)

fluoranthene (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (ISO)

gentamycin (EXP)

isoprenaline (ISO)

ivermectin (ISO)

L-methionine (ISO)

methotrexate (ISO)

methoxychlor (ISO)

ozone (EXP)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

quinolin-8-ol (ISO)

resveratrol (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-substrate adhesion (ISO)

MAPK cascade (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of MAPK cascade (ISO)

positive regulation of stress fiber assembly (ISO)

Cellular Component

cytoplasm (ISO)

focal adhesion (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

vinculin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Extracellular signal-regulated kinase activated by epidermal growth factor and cell adhesion interacts with and phosphorylates vinexin.	Mitsushima M, etal., J Biol Chem 2004 Aug 13;279(33):34570-7. Epub 2004 Jun 7.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:9885244	PMID:12477932	PMID:14625289	PMID:15734736	PMID:15836771	PMID:16831423	PMID:18662323	PMID:21423176	PMID:23325552	PMID:25824575

Genomics

Comparative Map Data

Sorbs3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,662,639 - 51,699,161 (-)	NCBI		GRCr8
mRatBN7.2	15	45,252,921 - 45,284,758 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,253,379 - 45,284,758 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	49,371,228 - 49,402,614 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,482,720 - 50,514,102 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,342,042 - 47,373,427 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	51,859,004 - 51,895,707 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,859,462 - 51,890,832 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,585,158 - 55,618,036 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,580,018 - 50,611,107 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,601,396 - 50,620,517 (-)	NCBI
Celera	15	44,932,832 - 44,964,037 (-)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

SORBS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,544,973 - 22,575,788 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,544,986 - 22,575,788 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	22,409,440 - 22,433,301 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,465,196 - 22,488,953 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	21,370,859 - 21,394,614 (+)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	20,951,413 - 20,975,170 (+)	NCBI		HuRef
CHM1_1	8	22,611,605 - 22,635,365 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,815,216 - 22,849,637 (+)	NCBI		T2T-CHM13v2.0

Sorbs3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,417,917 - 70,449,472 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,417,917 - 70,449,438 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	70,180,468 - 70,212,023 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	70,180,468 - 70,211,989 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	70,580,275 - 70,607,444 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	68,915,548 - 68,942,717 (-)	NCBI		MGSCv36	mm8
Celera	14	67,721,818 - 67,749,014 (-)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.27	NCBI

Sorbs3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	45,977,245 - 46,006,355 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	45,973,381 - 46,003,807 (+)	NCBI	ChiLan1.0	ChiLan1.0

SORBS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	41,050,309 - 41,082,539 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,773,546 - 16,807,767 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,794,805 - 21,825,675 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,733,782 - 18,763,861 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,733,776 - 18,763,861 (+)	Ensembl	panpan1.1		panPan2

SORBS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	34,701,495 - 34,725,231 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	34,702,238 - 34,709,811 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,291,141 - 35,319,691 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	34,910,981 - 34,939,521 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	34,910,980 - 34,939,081 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	34,857,398 - 34,885,906 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	34,711,480 - 34,739,991 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	34,867,033 - 34,895,680 (-)	NCBI		UU_Cfam_GSD_1.0

Sorbs3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	12,254,249 - 12,287,361 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	6,292,205 - 6,316,306 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	6,292,213 - 6,316,264 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SORBS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	6,808,166 - 6,828,975 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	6,802,944 - 6,831,152 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	7,284,853 - 7,311,001 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SORBS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,627,947 - 20,655,700 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,630,437 - 20,656,154 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	21,571,447 - 21,596,974 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sorbs3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	18,058,306 - 18,084,378 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	18,058,972 - 18,083,509 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Sorbs3
80 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	47
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000012056
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
2306968	Anxrr23	Anxiety related response QTL 23	4.83		reflex trait (VT:0001961)	amplitude of the acoustic startle response (CMO:0001520)	15	40631268	46187442	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
7411725	Strs7	Sensitivity to stroke QTL 7	3.8		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	15	40289901	49308583	Rat

Markers in Region

U58889

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	45,253,377 - 45,253,488 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	51,859,461 - 51,859,571	NCBI	Rnor6.0
Rnor_5.0	15	55,585,615 - 55,585,725	UniSTS	Rnor5.0
RGSC_v3.4	15	50,580,018 - 50,580,128	UniSTS	RGSC3.4
Celera	15	44,932,832 - 44,932,942	UniSTS
Cytogenetic Map	15	p11	UniSTS

RH131880

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	45,252,922 - 45,253,072 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	51,859,006 - 51,859,155	NCBI	Rnor6.0
Rnor_5.0	15	55,585,160 - 55,585,309	UniSTS	Rnor5.0
RGSC_v3.4	15	50,579,563 - 50,579,712	UniSTS	RGSC3.4
Celera	15	44,932,377 - 44,932,526	UniSTS
Cytogenetic Map	15	p11	UniSTS

RH143582

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	45,264,351 - 45,264,470 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	51,870,435 - 51,870,553	NCBI	Rnor6.0
Rnor_5.0	15	55,596,191 - 55,596,309	UniSTS	Rnor5.0
RGSC_v3.4	15	50,591,183 - 50,591,301	UniSTS	RGSC3.4
Celera	15	44,943,654 - 44,943,772	UniSTS
Cytogenetic Map	15	p11	UniSTS

RH138866

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	45,284,093 - 45,284,223 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	51,890,168 - 51,890,297	NCBI	Rnor6.0
Rnor_5.0	15	55,616,295 - 55,616,424	UniSTS	Rnor5.0
RGSC_v3.4	15	50,610,443 - 50,610,572	UniSTS	RGSC3.4
Celera	15	44,963,373 - 44,963,502	UniSTS
Cytogenetic Map	15	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005493698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC126842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF439378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012056 ⟹ ENSRNOP00000012056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	45,253,379 - 45,284,758 (-)	Ensembl
Rnor_6.0 Ensembl	15	51,859,462 - 51,890,832 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113720 ⟹ ENSRNOP00000095020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	45,253,379 - 45,275,866 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114102 ⟹ ENSRNOP00000076812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	45,253,379 - 45,284,758 (-)	Ensembl

RefSeq Acc Id:

NM_001005762 ⟹ NP_001005762

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,663,094 - 51,694,472 (-)	NCBI
mRatBN7.2	15	45,253,378 - 45,284,758 (-)	NCBI
Rnor_6.0	15	51,859,461 - 51,890,832 (-)	NCBI
Rnor_5.0	15	55,585,158 - 55,618,036 (-)	NCBI
RGSC_v3.4	15	50,580,018 - 50,611,107 (-)	RGD
Celera	15	44,932,832 - 44,964,037 (-)	RGD

Sequence:

show sequence

ACAATTTCATGCCAAGTCTAGGTGGTTTCAGCTCAAGCAGCAAGGACGTGAACATGGAGCATCC
CTCTGTGCAGCTCTGAAGTAGAGCCAAGCACTCTGCCTGCCTGTCAGAGCCTTAGAGCCTAAGA
AGTTCACTGCTGGTGAGGGGGATGGCCAGGATTCCCGGAGTGGGAAGATCTTCAACTTCGTCTT
TGGACAACAAAGAAGACAGTGAAAGTGATGTGGCCCTTCTTAGTCCCAAGGACCCTGACAGAGT
ACACACGAAGGAGCAGCTGGCACATCCTGTGTCCTCCAACCTTGACCCAAGCATGCAAGGCCTC
CCTGCTGGGCTCAGCCTGGATGATTTCATCCCTGGCCACCTCCGGGCCCATATAGGTGCATCTT
CCCGGGGGACAAGGGTGCCTGTGATCCGGAATGGTGGCTCCAACACCCTTAATTTCCAGTTTCA
TGACCCTGCACCCAGGACTGTGTGCAACGGCTGTCCCCCGCCCAGGAGAGATGGTTCCCAGCAT
CCAGACCCAGCATGGTATCAGACCTGGCCAGGCCCTGGGAGTCAGCCCTCTGTGAGCCCTAAGC
AGCCTGCCCCCCAGAATGCCCAGAACTGGTCAGCCACATGGACCAAGGACAGCAAGCGGCGGGA
CAAGCGCTGGGTGAAGTACGAGGGAATCGGGCCCGTGGATGAGAGCGGCATGCCCATTGCCCCC
CGATCAAGTGTCGACAGCCCCAGAGACTGGTATCGGAGAATGTTCCAGCAAATTCACCGGAAAA
TGCCAGACCTGCAGCTGGACTGGACCTTGGAAGACCCACCCAAAGTGGTTTCCTCACGTGCCTC
TTCTGCAGACCCCAGGCATCCAGGGCCCCAACAAAGACCTGCCTCCAGGCCTGGCACAACTGGG
ACTTCGAGCGGAAGAAACTGGAACCACTCTGAAGAGACATCTAGAAATACCTTGAACTATAATC
TTGGACCATCCTCAAGGCTTCATGCCTCAAATCAGGTGCCTAGACATCGAGAGAAAGTAGAGAA
TGTCTGGACAGAAGACTCCTGGAACCAGTTTCTGCACGAACTAGAAACTGGGCATAAGCCCAAG
AAATCACTGGTGGATGACCCTGTTGAGAAACCTGCACAGCCCATTGAGGTCCTGCTAGAGAGAG
AACTGGCCAAGCTGAGCGCAGAGCTGGACAAGGACCTGCGGGCCATTGAGACCCGCCTGCCATC
CCCCAAGAACTCTCAGGCTCCACGACGGCCCCTTGAGCAGCCCGGCCCGGAGCAGCAGCCCTCC
GCCCGACTGTCCTCAGCCTGGAGGCCCAACTCACCGCATGCACCTTACTTCGGTTCCTCCCGAC
CCCTGAGCCCCCACAGAATGGCAGATGGAGGAGGAAGCCCCTTTCTGGGACGTAGAGATTTTGT
CTACCCTTCCTCAGCCCGAGAGCCTAGTGCCTCTGAAAGGGGTAGCAGCCCTGCGAGGAAGGAG
GAGAAGAAGAGGAAGGCTGCCCGGCTCAAGTTTGACTTCCAGGCGCAGTCCCCCAAGGAGCTGA
CTCTGCAGAAGGGTGACATTGTCTATATCCATAAAGAAGTGGACAAGAACTGGCTGGAGGGGGA
ACACCATGGCCGACTGGGCATCTTCCCAGCTAATTATGTGGAGGTTCTGCCTGCAGATGAGATT
CCCAAGCCCATCAAGCCGCCCACATACCAGGTGCTGGAGTATGGAGATGCTGTAGCCCAGTATA
CCTTCAAGGGAGACCTGGATGTGGAGCTGTCCTTCCGAAAGGGGGAACGCATCTGCCTGATCCG
CAAAGTGAATGAACATTGGTACGAGGGGCGCATCACGGGCACGGGACGCCAAGGCATCTTCCCT
GCCAGCTACGTGCAGATAAACCGGGAGCCCCGGCTCAGGCTCTGCGACGATAGTCCCCAGCTCC
CTACATCACCTCACCTGACAACCACTGCTCATCTAGGCAGCCACTCCCAACCCTCCTCAATACC
TGTGGACCCCACTGACTGGGGAGGTCGGACCTCCCCCCGACGCTCTGCCTTCCCCTTCCCCATC
ACCCTTCAGGAGCCCAGATCCCAACCCCAGAGTCTCAGTACCCCTGGACCAACCCTGTCCCATC
CACGAGGCACCAGCCATCCCACAAACCTGGGGTCCTCCTCCCTAAACACCACAGAGATACACTG
GACTCCGTACCGGGCCATGTACCAGTACAGACCCCAGAATGAAGATGAGCTGGAACTTCGTGAG
GGAGACCGTGTGGATGTCATGCAGCAGTGTGATGATGGCTGGTTTGTGGGTGTCTCCCGGAGAA
CTCAGAAATTTGGGACATTCCCTGGAAATTATGTAGCCCCGGTGTGAATGGTCTCCATGGCAGT
ATGGAGCCAACGAGGATCGGGTGGGGAGCAGTAGCACTATGGGAGGGAGAGAGGCCCTCCATAT
CCTCCTCCCCCAGGACCTATGCTCCCAGCTTCTGCAGAAACCCCAGCAACTTTTCCTCCAAGCC
TCCTTGAAGTCCCCTGGACTGATTCCCACCCGCAAGTCACAGGCATTCCTTTGACAGCCCCCTT
CACCGCCCCTCAAATACAGACATCTGCTTTCATGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252242 ⟹ XP_006252304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,662,639 - 51,692,436 (-)	NCBI
mRatBN7.2	15	45,252,921 - 45,281,138 (-)	NCBI
Rnor_6.0	15	51,859,004 - 51,887,219 (-)	NCBI
Rnor_5.0	15	55,585,158 - 55,618,036 (-)	NCBI

Sequence:

show sequence

GGCTCAGGTGGCTGTGGAGGCCATGTCAGTCCTTGACCCAAGGCCGTGCTGGAGGTGTGCAGGC
AGCGGACAAAAGGGGAAGGAGGTCCCTCTTGAACAAGAGGGCATGCAGGAGACAGAGCATGGCA
TACTGACCAGGGCTGCACTATCTGGGACAATGTTAACTGGCTCTAATATGCCACTGCAAGCTGC
CCAGGGTCAGAGCCTTAGAGCCTAAGAAGTTCACTGCTGGTGAGGGGGATGGCCAGGATTCCCG
GAGTGGGAAGATCTTCAACTTCGTCTTTGGACAACAAAGAAGACAGTGAAAGTGATGTGGCCCT
TCTTAGTCCCAAGGACCCTGACAGAGTACACACGAAGGAGCAGCTGGCACATCCTGTGTCCTCC
AACCTTGACCCAAGCATGCAAGGCCTCCCTGCTGGGCTCAGCCTGGATGATTTCATCCCTGGCC
ACCTCCGGGCCCATATAGGTGCATCTTCCCGGGGGACAAGGGTGCCTGTGATCCGGAATGGTGG
CTCCAACACCCTTAATTTCCAGTTTCATGACCCTGCACCCAGGACTGTGTGCAACGGCTGTCCC
CCGCCCAGGAGAGATGGTTCCCAGCATCCAGACCCAGCATGGTATCAGACCTGGCCAGGCCCTG
GGAGTCAGCCCTCTGTGAGCCCTAAGCAGCCTGCCCCCCAGAATGCCCAGAACTGGTCAGCCAC
ATGGACCAAGGACAGCAAGCGGCGGGACAAGCGCTGGGTGAAGTACGAGGGAATCGGGCCCGTG
GATGAGAGCGGCATGCCCATTGCCCCCCGATCAAGTGTCGACAGCCCCAGAGACTGGTATCGGA
GAATGTTCCAGCAAATTCACCGGAAAATGCCAGACCTGCAGCTGGACTGGACCTTGGAAGACCC
ACCCAAAGTGGTTTCCTCACGTGCCTCTTCTGCAGACCCCAGGCATCCAGGGCCCCAACAAAGA
CCTGCCTCCAGGCCTGGCACAACTGGGACTTCGAGCGGAAGAAACTGGAACCACTCTGAAGAGA
CATCTAGAAATACCTTGAACTATAATCTTGGACCATCCTCAAGGCTTCATGCCTCAAATCAGGT
GCCTAGACATCGAGAGAAAGTAGAGAATGTCTGGACAGAAGACTCCTGGAACCAGTTTCTGCAC
GAACTAGAAACTGGGCATAAGCCCAAGAAATCACTGGTGGATGACCCTGTTGAGAAACCTGCAC
AGCCCATTGAGGTCCTGCTAGAGAGAGAACTGGCCAAGCTGAGCGCAGAGCTGGACAAGGACCT
GCGGGCCATTGAGACCCGCCTGCCATCCCCCAAGAACTCTCAGGCTCCACGACGGCCCCTTGAG
CAGCCCGGCCCGGAGCAGCAGCCCTCCGCCCGACTGTCCTCAGCCTGGAGGCCCAACTCACCGC
ATGCACCTTACTTCGGTTCCTCCCGACCCCTGAGCCCCCACAGAATGGCAGATGGAGGAGGAAG
CCCCTTTCTGGGACGTAGAGATTTTGTCTACCCTTCCTCAGCCCGAGAGCCTAGTGCCTCTGAA
AGGGGTAGCAGCCCTGCGAGGAAGGAGGAGAAGAAGAGGAAGGCTGCCCGGCTCAAGTTTGACT
TCCAGGCGCAGTCCCCCAAGGAGCTGACTCTGCAGAAGGGTGACATTGTCTATATCCATAAAGA
AGTGGACAAGAACTGGCTGGAGGGGGAACACCATGGCCGACTGGGCATCTTCCCAGCTAATTAT
GTGGAGGTTCTGCCTGCAGATGAGATTCCCAAGCCCATCAAGCCGCCCACATACCAGGTGCTGG
AGTATGGAGATGCTGTAGCCCAGTATACCTTCAAGGGAGACCTGGATGTGGAGCTGTCCTTCCG
AAAGGGGGAACGCATCTGCCTGATCCGCAAAGTGAATGAACATTGGTACGAGGGGCGCATCACG
GGCACGGGACGCCAAGGCATCTTCCCTGCCAGCTACGTGCAGATAAACCGGGAGCCCCGGCTCA
GGCTCTGCGACGATAGTCCCCAGCTCCCTACATCACCTCACCTGACAACCACTGCTCATCTAGG
CAGCCACTCCCAACCCTCCTCAATACCTGTGGACCCCACTGACTGGGGAGGTCGGACCTCCCCC
CGACGCTCTGCCTTCCCCTTCCCCATCACCCTTCAGGAGCCCAGATCCCAACCCCAGAGTCTCA
GTACCCCTGGACCAACCCTGTCCCATCCACGAGGCACCAGCCATCCCACAAACCTGGGGTCCTC
CTCCCTAAACACCACAGAGATACACTGGACTCCGTACCGGGCCATGTACCAGTACAGACCCCAG
AATGAAGATGAGCTGGAACTTCGTGAGGGAGACCGTGTGGATGTCATGCAGCAGTGTGATGATG
GCTGGTTTGTGGGTGTCTCCCGGAGAACTCAGAAATTTGGGACATTCCCTGGAAATTATGTAGC
CCCGGTGTGAATGGTCTCCATGGCAGTATGGAGCCAACGAGGATCGGGTGGGGAGCAGTAGCAC
TATGGGAGGGAGAGAGGCCCTCCATATCCTCCTCCCCCAGGACCTATGCTCCCAGCTTCTGCAG
AAACCCCAGCAACTTTTCCTCCAAGCCTCCTTGAAGTCCCCTGGACTGATTCCCACCCGCAAGT
CACAGGCATTCCTTTGACAGCCCCCTTCACCGCCCCTCAAATACAGACATCTGCTTTCATGTGG
AGACTGTCTCCAGGCCTTATTGAGACCAGACCCCCCCAAGCCTCCACCCCCCCCCCAGCATTTC
CCCTAATGGGGACTGGCTCTCGCTTCACCCCCATGGGGTTCCTCTAATAAGGACCAGCCTCCTA
CCCTGGTGAAGACCAAAGGCCTCCTCCAGTTTCTCACCAGCTTGCCTGCTACCACTTTGCCTTC
TGGCCTCCAGCTGGGCCTGCAAGCAAGGTGGGGAACACCTCCTCAGTCTTCAAGGCCTAGTGAG
AGACTTTGCCTCAAGGCCTCAGGGCCTACTGGGCCCCTGGGTAGGGCCTCCACATATACCTTAC
CCACTGAGGCACACAACTGCCCTGGCCTATCAGAAGATTTATTTACAGGGAGACAAGCTTGCTG
TCCCAGTTCCCAGCTCTTCCCGGTGTCCTGGTCCCCTCTGGAAGAGAATGTAAAATAAACGTGG
GCACCAGGGA

hide sequence

RefSeq Acc Id:

XM_039093073 ⟹ XP_038949001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,662,639 - 51,699,161 (-)	NCBI
mRatBN7.2	15	45,252,921 - 45,280,380 (-)	NCBI

RefSeq Acc Id:

XM_039093074 ⟹ XP_038949002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,662,639 - 51,683,594 (-)	NCBI
mRatBN7.2	15	45,252,921 - 45,278,728 (-)	NCBI

RefSeq Acc Id:

XM_063274057 ⟹ XP_063130127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,662,639 - 51,699,161 (-)	NCBI

RefSeq Acc Id:

XM_063274058 ⟹ XP_063130128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,662,639 - 51,699,161 (-)	NCBI

RefSeq Acc Id:

XM_063274060 ⟹ XP_063130130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,672,389 - 51,699,161 (-)	NCBI

RefSeq Acc Id:

XM_063274061 ⟹ XP_063130131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,673,766 - 51,699,161 (-)	NCBI

RefSeq Acc Id:

XR_005493698

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,672,679 - 51,699,161 (-)	NCBI
mRatBN7.2	15	45,262,962 - 45,280,380 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005762	(Get FASTA)	NCBI Sequence Viewer
	XP_006252304	(Get FASTA)	NCBI Sequence Viewer
	XP_038949001	(Get FASTA)	NCBI Sequence Viewer
	XP_038949002	(Get FASTA)	NCBI Sequence Viewer
	XP_063130127	(Get FASTA)	NCBI Sequence Viewer
	XP_063130128	(Get FASTA)	NCBI Sequence Viewer
	XP_063130130	(Get FASTA)	NCBI Sequence Viewer
	XP_063130131	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83666	(Get FASTA)	NCBI Sequence Viewer
	AAN63631	(Get FASTA)	NCBI Sequence Viewer
	EDM02208	(Get FASTA)	NCBI Sequence Viewer
	EDM02209	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012056.4
	ENSRNOP00000076812.1
	ENSRNOP00000095020.1

RefSeq Acc Id:

NP_001005762 ⟸ NM_001005762

- UniProtKB:

Q5XIL4 (UniProtKB/TrEMBL), A6HTJ5 (UniProtKB/TrEMBL), A0A8I5Y5L8 (UniProtKB/TrEMBL), F7EV37 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARIPGVGRSSTSSLDNKEDSESDVALLSPKDPDRVHTKEQLAHPVSSNLDPSMQGLPAGLSLD
DFIPGHLRAHIGASSRGTRVPVIRNGGSNTLNFQFHDPAPRTVCNGCPPPRRDGSQHPDPAWYQ
TWPGPGSQPSVSPKQPAPQNAQNWSATWTKDSKRRDKRWVKYEGIGPVDESGMPIAPRSSVDSP
RDWYRRMFQQIHRKMPDLQLDWTLEDPPKVVSSRASSADPRHPGPQQRPASRPGTTGTSSGRNW
NHSEETSRNTLNYNLGPSSRLHASNQVPRHREKVENVWTEDSWNQFLHELETGHKPKKSLVDDP
VEKPAQPIEVLLERELAKLSAELDKDLRAIETRLPSPKNSQAPRRPLEQPGPEQQPSARLSSAW
RPNSPHAPYFGSSRPLSPHRMADGGGSPFLGRRDFVYPSSAREPSASERGSSPARKEEKKRKAA
RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPADEIPKPIKPP
TYQVLEYGDAVAQYTFKGDLDVELSFRKGERICLIRKVNEHWYEGRITGTGRQGIFPASYVQIN
REPRLRLCDDSPQLPTSPHLTTTAHLGSHSQPSSIPVDPTDWGGRTSPRRSAFPFPITLQEPRS
QPQSLSTPGPTLSHPRGTSHPTNLGSSSLNTTEIHWTPYRAMYQYRPQNEDELELREGDRVDVM
QQCDDGWFVGVSRRTQKFGTFPGNYVAPV

hide sequence

RefSeq Acc Id:	XP_006252304 ⟸ XM_006252242
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIL4 (UniProtKB/TrEMBL), A6HTJ5 (UniProtKB/TrEMBL), A0A8I5Y5L8 (UniProtKB/TrEMBL), F7EV37 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARIPGVGRSSTSSLDNKEDSESDVALLSPKDPDRVHTKEQLAHPVSSNLDPSMQGLPAGLSLD DFIPGHLRAHIGASSRGTRVPVIRNGGSNTLNFQFHDPAPRTVCNGCPPPRRDGSQHPDPAWYQ TWPGPGSQPSVSPKQPAPQNAQNWSATWTKDSKRRDKRWVKYEGIGPVDESGMPIAPRSSVDSP RDWYRRMFQQIHRKMPDLQLDWTLEDPPKVVSSRASSADPRHPGPQQRPASRPGTTGTSSGRNW NHSEETSRNTLNYNLGPSSRLHASNQVPRHREKVENVWTEDSWNQFLHELETGHKPKKSLVDDP VEKPAQPIEVLLERELAKLSAELDKDLRAIETRLPSPKNSQAPRRPLEQPGPEQQPSARLSSAW RPNSPHAPYFGSSRPLSPHRMADGGGSPFLGRRDFVYPSSAREPSASERGSSPARKEEKKRKAA RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPADEIPKPIKPP TYQVLEYGDAVAQYTFKGDLDVELSFRKGERICLIRKVNEHWYEGRITGTGRQGIFPASYVQIN REPRLRLCDDSPQLPTSPHLTTTAHLGSHSQPSSIPVDPTDWGGRTSPRRSAFPFPITLQEPRS QPQSLSTPGPTLSHPRGTSHPTNLGSSSLNTTEIHWTPYRAMYQYRPQNEDELELREGDRVDVM QQCDDGWFVGVSRRTQKFGTFPGNYVAPV hide sequence

Ensembl Acc Id:

ENSRNOP00000012056 ⟸ ENSRNOT00000012056

RefSeq Acc Id:	XP_038949001 ⟸ XM_039093073
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5Y5L8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949002 ⟸ XM_039093074
- Peptide Label:	isoform X3
- UniProtKB:	A6HTJ6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000076812 ⟸ ENSRNOT00000114102

Ensembl Acc Id:

ENSRNOP00000095020 ⟸ ENSRNOT00000113720

RefSeq Acc Id:	XP_063130128 ⟸ XM_063274058
- Peptide Label:	isoform X1
- UniProtKB:	A6HTJ5 (UniProtKB/TrEMBL), F7EV37 (UniProtKB/TrEMBL), Q5XIL4 (UniProtKB/TrEMBL), A0A8I5Y5L8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130127 ⟸ XM_063274057
- Peptide Label:	isoform X1
- UniProtKB:	A6HTJ5 (UniProtKB/TrEMBL), F7EV37 (UniProtKB/TrEMBL), Q5XIL4 (UniProtKB/TrEMBL), A0A8I5Y5L8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130130 ⟸ XM_063274060
- Peptide Label:	isoform X4
- UniProtKB:	Q8CJ75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130131 ⟸ XM_063274061
- Peptide Label:	isoform X5

Protein Domains

SH3 SoHo

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIL4-F1-model_v2	AlphaFold	Q5XIL4	1-733	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699806

Promoter ID:

EPDNEW_R10329

Type:

multiple initiation site

Name:

Sorbs3_1

Description:

sorbin and SH3 domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	51,890,909 - 51,890,969	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628900	AgrOrtholog
BioCyc Gene	G2FUF-13234	BioCyc
Ensembl Genes	ENSRNOG00000008829	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012056.5	UniProtKB/TrEMBL
	ENSRNOT00000113720.1	UniProtKB/TrEMBL
	ENSRNOT00000114102.1	UniProtKB/TrEMBL
Gene3D-CATH	SH3 Domains	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135547	IMAGE-MGC_LOAD
InterPro	Endophilin_SH3RF	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	Sorb	UniProtKB/TrEMBL
	Vinexin_SH3_1	UniProtKB/TrEMBL
	Vinexin_SH3_2	UniProtKB/TrEMBL
	Vinexin_SH3_3	UniProtKB/TrEMBL
KEGG Report	rno:282843	UniProtKB/TrEMBL
MGC_CLONE	MGC:94509	IMAGE-MGC_LOAD
NCBI Gene	282843	ENTREZGENE
PANTHER	PTHR14167:SF54	UniProtKB/TrEMBL
	SH3 DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	SH3_1	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
	Sorb	UniProtKB/TrEMBL
PhenoGen	Sorbs3	PhenoGen
PRINTS	SH3DOMAIN	UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/TrEMBL
	SOHO	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008829	RatGTEx
SMART	SH3	UniProtKB/TrEMBL
	Sorb	UniProtKB/TrEMBL
Superfamily-SCOP	SH3	UniProtKB/TrEMBL
UniProt	A0A8I5Y5L8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ANW9_RAT	UniProtKB/TrEMBL
	A6HTJ5	ENTREZGENE, UniProtKB/TrEMBL
	A6HTJ6	ENTREZGENE, UniProtKB/TrEMBL
	F7EV37	ENTREZGENE, UniProtKB/TrEMBL
	Q5XIL4	ENTREZGENE
	Q8CJ75	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q5XIL4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Sorbs3	sorbin and SH3 domain containing 3	Sh3d4	SH3 domain protein 4	Symbol and Name updated	1299863	APPROVED
2005-01-20	Sh3d4	SH3 domain protein 4			Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Sh3d4	SH3 domain protein 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar