Olr59 (olfactory receptor 59) - Rat Genome Database

Name: Olr59
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Olr59 (olfactory receptor 59) Rattus norvegicus

Analyze

Symbol:

Olr59

Name:

olfactory receptor 59

RGD ID:

628858

Description:

Predicted to enable nuclear steroid receptor activity and olfactory receptor activity. Predicted to be involved in several processes, including cellular response to lipid; melanocyte proliferation; and regulation of blood pressure. Predicted to be located in early endosome membrane. Predicted to be active in plasma membrane. Orthologous to human OR51E2 (olfactory receptor family 51 subfamily E member 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

G-protein coupled receptor RA1c; olfactory receptor 51E2; olfactory receptor 78; Olfr78; Or51e2; RA1c

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	166,604,972 - 166,639,634 (-)	NCBI		GRCr8
mRatBN7.2	1	157,193,051 - 157,227,707 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	157,193,080 - 157,211,179 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	165,161,159 - 165,167,063 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	172,341,256 - 172,347,160 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	165,257,509 - 165,263,413 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	167,906,030 - 167,940,688 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	167,906,061 - 167,911,961 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	174,082,179 - 174,088,103 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	160,607,895 - 160,613,826 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	160,686,911 - 160,692,841 (+)	NCBI
Celera	1	155,246,673 - 155,252,571 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (EXP)

delta beta-thalassemia (ISO)

Experimental Liver Cirrhosis (EXP)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',5-triiodo-L-thyronine (EXP)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

alpha-ionone (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

beta-ionone (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

butanal (ISO)

C60 fullerene (EXP)

CGP 52608 (ISO)

clofibrate (EXP)

clofibric acid (EXP)

clothianidin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (EXP)

dextran sulfate (ISO)

dichloroacetic acid (ISO)

doramapimod (EXP)

ethanol (EXP)

fulvestrant (ISO)

furan (EXP)

glycidol (EXP)

indole-3-methanol (EXP)

L-ethionine (EXP)

lead diacetate (EXP)

methamphetamine (EXP)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

nefazodone (EXP)

nitrofen (EXP)

omeprazole (EXP)

p-toluidine (EXP)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (EXP)

pirinixic acid (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

propanal (ISO)

resveratrol (ISO)

sodium dichromate (EXP)

streptozocin (EXP)

taurine (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (EXP)

valdecoxib (EXP)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IEA,ISO,ISS)

cell migration (IEA,ISO,ISS)

cellular response to fatty acid (IEA,ISO,ISS)

detection of chemical stimulus involved in sensory perception of smell (IEA)

melanocyte differentiation (IEA,ISO,ISS)

melanocyte proliferation (IEA,ISO,ISS)

positive regulation of blood pressure (IEA,ISO,ISS)

positive regulation of renin secretion into blood stream (IEA,ISO,ISS)

steroid hormone mediated signaling pathway (IEA,ISO,ISS)

Cellular Component

early endosome membrane (IEA,ISO,ISS)

intracellular organelle (ISO)

plasma membrane (IBA,IEA,ISO,ISS)

Molecular Function

G protein-coupled receptor activity (IEA)

nuclear steroid receptor activity (IEA,ISO,ISS)

olfactory receptor activity (IBA,IEA,ISO,ISS)

signaling receptor activity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Identification of a novel G-protein coupled receptor expressed in distinct brain regions and a defined olfactory zone.	Raming K, etal., Receptors Channels 1998;6(2):141-51.
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15057822	PMID:19389702	PMID:23401498	PMID:27226631	PMID:28299817	PMID:29249973

Genomics

Comparative Map Data

Olr59
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	166,604,972 - 166,639,634 (-)	NCBI		GRCr8
mRatBN7.2	1	157,193,051 - 157,227,707 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	157,193,080 - 157,211,179 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	165,161,159 - 165,167,063 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	172,341,256 - 172,347,160 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	165,257,509 - 165,263,413 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	167,906,030 - 167,940,688 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	167,906,061 - 167,911,961 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	174,082,179 - 174,088,103 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	160,607,895 - 160,613,826 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	160,686,911 - 160,692,841 (+)	NCBI
Celera	1	155,246,673 - 155,252,571 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

OR51E2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	4,680,171 - 4,697,853 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	4,680,171 - 4,697,854 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	4,701,401 - 4,719,083 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	4,657,977 - 4,675,648 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	4,657,976 - 4,675,645	NCBI
Celera	11	4,825,597 - 4,843,274 (-)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	4,359,998 - 4,377,674 (-)	NCBI		HuRef
CHM1_1	11	4,701,368 - 4,719,040 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	4,745,678 - 4,763,359 (-)	NCBI		T2T-CHM13v2.0

Or51e2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	102,389,928 - 102,408,678 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	102,387,718 - 102,408,678 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	102,740,721 - 102,759,471 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	102,738,511 - 102,759,471 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	109,889,235 - 109,907,985 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	102,614,552 - 102,633,216 (-)	NCBI		MGSCv36	mm8
Celera	7	103,103,681 - 103,122,431 (-)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	54.83	NCBI

LOC100976603
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	7,138,238 - 7,142,968 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	7,094,963 - 7,099,679 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	4,853,325 - 4,871,457 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	4,518,482 - 4,536,596 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	4,520,050 - 4,521,012 (-)	Ensembl	panpan1.1		panPan2

OR51E2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	27,078,888 - 27,081,746 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	27,080,476 - 27,081,438 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	26,863,707 - 26,864,678 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	27,320,592 - 27,321,563 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	27,319,009 - 27,336,965 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	27,086,028 - 27,086,998 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	27,329,663 - 27,330,634 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	27,219,790 - 27,220,761 (-)	NCBI		UU_Cfam_GSD_1.0

LOC100625684
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	5,432,611 - 5,433,573 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	5,431,098 - 5,434,483 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103247947
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	62,172,573 - 62,180,085 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	62,177,553 - 62,178,515 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	63,746,770 - 63,764,029 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Olr59
316 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	93
Interacting mature miRNAs:	100
Transcripts:	ENSRNOT00000025097
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	115585465	172949803	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
2313060	Bss71	Bone structure and strength QTL 71	2.6	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	1	118944747	163944747	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	121767634	166767634	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121833674	166833674	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	168883176	Rat
9685799	Bp375	Blood pressure QTL 375			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
9685802	Bp376	Blood pressure QTL 376			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	126540680	171540680	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	131763437	159756369	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	136745990	163747690	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383668	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
634315	Niddm45	Non-insulin dependent diabetes mellitus QTL 45	7.16		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	144267916	172949660	Rat
61379	Bp44	Blood pressure QTL 44	19.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144267916	174133260	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
1582204	Livw1	Liver weight QTL 1	3.6	0.0003	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	1	155422851	172949803	Rat
4889419	Cstrr2	Cold stress response QTL 2		0.05	urine catecholamine amount (VT:0010502)	absolute change in urine norepinephrine level (CMO:0001634)	1	155866514	158592016	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	156677124	176484451	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat

Markers in Region

RH141453

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	157,193,803 - 157,194,012 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	167,906,783 - 167,906,991	NCBI	Rnor6.0
Rnor_5.0	1	174,082,925 - 174,083,133	UniSTS	Rnor5.0
RGSC_v3.4	1	160,612,872 - 160,613,080	UniSTS	RGSC3.4
Celera	1	155,247,419 - 155,247,627	UniSTS
RH 3.4 Map	1	1283.9	UniSTS
Cytogenetic Map	1	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			7	7		7			6	2
Low	3	29	7	7	6	7	6	7	27	22	19	9	6
Below cutoff		8	20	9	8	9	2	4	15	9	13	2	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_173293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF079864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025097 ⟹ ENSRNOP00000025097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	157,193,080 - 157,211,179 (-)	Ensembl
Rnor_6.0 Ensembl	1	167,906,061 - 167,911,961 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115264 ⟹ ENSRNOP00000092126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	157,193,080 - 157,201,337 (-)	Ensembl

RefSeq Acc Id:

NM_173293 ⟹ NP_775415

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	166,604,979 - 166,610,903 (-)	NCBI
mRatBN7.2	1	157,193,058 - 157,198,982 (-)	NCBI
Rnor_6.0	1	167,906,037 - 167,911,961 (-)	NCBI
Rnor_5.0	1	174,082,179 - 174,088,103 (-)	NCBI
RGSC_v3.4	1	160,607,895 - 160,613,826 (+)	RGD
Celera	1	155,246,673 - 155,252,571 (-)	RGD

Sequence:

show sequence

GGCACGAGCTTTACTTATGTCACAGGCATAATAAAACATGACTTCATTATATAAGGGGCTATGC
TTAAACTGAAAGAGAAGTAGGAGAGAGTTATGGAGATGTGAATGGACCTATTTTGAGCTGTGAG
GCTACATTTTAAGGTACCTACTTAGATTATAAGCCTGATGTGAACTCCAAGAGTTCAATAATCA
TGACTATTCATACACCTTGCCTGCTGTGTCTAGCAGATCAAATGAGGAAACACTAACCTTGCGG
CTGACTGTAGAAATTAGATCAATTTAGAGGAGTGGGAACACATGTTTGTTATCAAGAGACTACC
ATGTGTCATTGTGGGAATAGGAGCAGAGACCTTGGTCCTTTGAGATTGCTTTCTTAGACATAAA
AGGGGGACGCTGGTGAGAGAAGCACACAAGTAGACATGATTATTTCACTCCTCTGTCTGCCAGA
TCCCTAGAGCATCAGCTGGTGTTCCAGCAGCTTGTTCCCCGAGCCTCCTGAGTAGCATTATAGA
GAGGTCTGTTCCAGAAAGCGAAAGCCAGATCCAGCTGCCCTCCTGGAGCAGAACAACACAATTT
CCAGGCTGTCCCTGTGGCCTCTCCCTCTTCCAGTCTGCCCCACTTGGTGTCAGCGATGAGCTCC
TGCAACTTCACTCACGCCACCTTCATGCTTATCGGTATTCCAGGACTGGAGGAAGCTCACTTTT
GGTTTGGCTTCCCCCTACTTTCCATGTACGCTGTAGCATTGTTTGGAAATTGCATTGTGGTCTT
CATCGTGAGGACAGAGCGGAGCCTGCATGCGCCCATGTATCTTTTTCTCTGCATGCTGGCAGCT
ATTGATCTGGCTTTGTCCACCTCTACAATGCCCAAGATTCTCGCCCTCTTTTGGTTTGACTCCC
GGGAGATTACTTTTGATGCCTGTCTCGCCCAGATGTTCTTCATTCACGCTCTCTCAGCAATTGA
ATCTACCATCTTGCTGGCCATGGCCTTTGACCGGTATGTGGCTATCTGCCACCCACTGCGTCAC
GCTGCTGTGCTCAACAATACAGTAACAGTCCAAATCGGCATGGTGGCTCTGGTCCGGGGATCCC
TATTCTTTTTCCCACTCCCACTGCTGATCAAGCGACTGGCCTTCTGCCACTCCAATGTGCTCTC
CCACTCCTATTGTGTTCACCAGGATGTGATGAAGTTGGCCTATACAGACACATTGCCCAATGTA
GTCTATGGTCTAACTGCCATTCTGCTAGTCATGGGTGTAGATGTCATGTTCATCTCCTTGTCCT
ATTTCCTGATTATACGAGCAGTTCTGCAATTGCCTTCCAAGTCTGAGCGAGCTAAGGCATTTGG
AACCTGTGTGTCACACATTGGTGTAGTCCTGGCTTTCTATGTCCCACTCATTGGCCTGTCAGTA
GTGCACCGTTTTGGAAACAGCCTGGATCCCATTGTGCATGTTCTCATGGGCGATGTCTACCTGC
TGCTGCCTCCTGTGATCAATCCCATCATCTACGGTGCTAAGACCAAACAGATCAGAACACGGGT
GCTGGCTATGTTCAAGATCAGTTGTGACAAGGACATTGAAGCTGGAGGAAACACGTGACCCTTA
CCGTTCTATCACCCTTGTCCTACATGGCTTAATATAATGATTAATAATTCATCACACCGGCCTA
ACTCCAGTCACCCAAAAGCACATTAGTGCTTTAACTGAATGGGACAGTGAACTAAAGTATGGTT
TATCTTCATCATGGATACAATGTGAAATATCTATCATGTGTTTTAAAGCTTGTGCTATAAAATG
AGACCCATTGATAATACTAAATGAAACAACTAGGATTTGTGATTTAAACTAATTGTTTGTGATT
TGAATGAGATATGTTGAAATTACTAGCAACTTTTTTTATTCCNACTTCCTTTGTTGTAAAGCTA
TCTGTAATGTTTAACTTCTGAATTGTGGAACATGGAGCTGACAGTATGGTAGCCAAGGGTTTCC
TCACTCATTTCAATGCTATTATTCACTACCCAGGAACATTTATGAGCTCTAAATAATATGGCTC
ATGAATGTATCATGTAACGTGTTCCAGTCCCTGCGTTAAGTACTTTTCAGACTTTCTGTGATCT
TGCTCTTTTCCCAAGGAAGATACCATTGTTGCCTGCCACAACATGTGACAAAGACTTTAATGAG
TAAAGAAACTTTCTTGAATGTTCTGTGCCAAGATTTTAAATTAAATTGGATAATTGAATACATT
TGCTTTACCACCATGTTATATTGCTTCCTGTTTAACATCTGCCATCTATTTCCTCTGCCTATTA
CAAATCCTGCTTTCTCTCTGCCGTGTGCTAGCATGGACGTCTTTGTGTTTGTGGTAAGTGATTA
ACCCTGTCCTGGTGGAGGGCAACAAACTGTTCAGCATGACAGAGTAGCTGCTTCTTCTCATATG
AACAGAGGAGATTTAAATTTTTTAGTCTCTTACATATCCTTGATTGTGTCCTCTTTGTATTGTG
TCCTGTAGCTGTCAAATCTCTTAAATGTATAACATAAGATATTGCCTGATTCTTGACTTAGGTA
TCAAACAACATAATAATTTATCTTAAAATGTTCAGTATTATTTTTACTGTTTTAATGTTCATAA
GTAATGTTGGGAGACATGAGTGATTTCCCCCAGTCCTCTTTACCAACAGTGCAAAGGGCCTGCC
AGGTATGGGTTGCACAACTATAAAGATGTTGAATGAACTTATGTAGAATATTCCCTTTGTATTG
AGTGGATGATGAAAATGTTCTTAGATTAGGGTATTAATGACACCTACAAAATAATGTTAATATA
TTCGATGTACGCATAATGCTTAAAATGCTGAGATTTATGTAGTATGTATCTGCCACAATAAAAA
ATCATTTAAAATAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008759669 ⟹ XP_008757891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	166,604,972 - 166,623,199 (-)	NCBI
mRatBN7.2	1	157,193,051 - 157,211,327 (-)	NCBI
Rnor_6.0	1	167,906,030 - 167,926,030 (-)	NCBI

Sequence:

show sequence

GGGGGTGAAGATACACAAAGAGTAAGTATATATGAAAATGCCATAAAGAATCCTGCCACTGCGT
GCATGATGGCATACACTCTTAATCCCAGCACTCAGGAGACAGAGGAAGCTAAATCTCTACGCTT
TGAAGATAATGTAGTCTACCTAGCAAATTCCAGGTCAGTCAGAGACACACAGTGAGGCCCCATC
CTGGGGTGGGGGAGGGGCTACTTTGTAAGGGAATTTTGAAACAAGTATTAGGTCCCACTCAAGT
CTGTCTACTGCTCTTGACTTACGTACTCCTTTTGTGATTTCCAAAGGCAGCAAAGAGGGTGGCA
AGCCCTTTGTATGCAGCCTTCTCTTCAGTTCTTCATTTATTAGGATGCATGTGAAAATATGGAG
TCAACCCAAACCACTTCATCTAAAAGCTTTTAACTTTCATCACATATGCAAAGCTACCTTTGAC
ATGTAAAATATCAATTCAGATTCTAAGTATTAAAATATGGCCCTCTTTGGGAGATATTATTCTG
TCCACAAAACCCTTGGCACAGTATCTTAGACATATAATGCCCAGGTTTATTATTGTTTTTATAA
CGTTAGAAAACTAAAGTACCTCAGAACAATACATTTTGGTGGTGAAAATATTTGGTGGGAAGCA
AATAGAAAAGGGCGACGAGGCAGCTGATGTTATGCCAGTAGAACAGCAGAAGACTTGGTAGACG
TGGCACTTGGGGAGAAGATGAAAAACAACCAGATTCTATCAACGTCCGCAACTCTCGATAGAAT
TTGTCAATGTAATGGATGCAGGATGTAAGCGAGGGAAATCAGGAATAACTTAAGGATCTATAAA
TCCAGAAATGGCCCTGAGTTGGTAGGACTGCAGGAACAACTAAAGAAGCCATGTGTATAACCAA
TTAATGAATAATGCGTAGTAAGTACTGAGGGGGTCAGTAGTCAGCTCACCGTAGATCGCATCAC
TAACCAAAGACAACTCCTACCTCCCCTGATCCCTTAACATAATATTCCCGTGATTTAAACACAG
TACATATGCCCCCAAAATCATCCTAGTTATTCCCTCACCTTGCCACTTCAGGTATCAAAATAAG
AAAGCAGGTAAAAGTATGGAAAAGTAAACAAAAAGGTATTTATTTGCTGTGTGCCTAAATTAAG
GACTGAGATGTTTTACCACTATGTATACAAAGCACCTGCTTCTAAGAGAATTTTGATGCTGATT
ATCATGTGACTGTTAGCCTGTCTCTCTTCTAAATTAGAAGTTTAGGCAGTGGGTCTATGTTCTT
TTCTTTTTACTAATCTCTGGGACTTCCAGAATAGTTAGAACATACAGTGTCATTATGAAATCTA
TACGCGTGGATGAATGTACAAGTTATTTCCTAATCTTAAGAGGTAGCTACTTCACTAGTGCATT
CCCAGTAAGCTAATGATCCAGTGTTACTGTGAATAACGCCAGACTCTAGGGGGTTAAAACATTG
CAGAACGAAGTAAACATATTCTCATAGCAGGAGATGTTTTAAGCATATGCTATTTCAATTTCAA
ATTCACCTCAATGGCTTGCTAATGGTTATGGCATTTTTGAGGTGGTGAAGTTTCCCTAAATTGG
ATTGTGGTGATGGTTCCTGCATAATTTTGTGATTTTTTTTAAAACTATTGAGTTATACATTATA
AATGAGTCAATTATATAATAGGTGTGCTATATCTCAATAAAGCTTTAATTTAAAAAGCTTTCCG
ATGAAATAGCTCAAAGACAAAACTTTACAACAGCTCATAAAGCATGTAGGCATAATCACATCCT
GTGAGAGATATAAAAAGCTTGTATCAGGCAAGTGAAGTCCTCTGGGAGTGTCTGCACCCTAGAG
GCGCAGTGAATTAGCACTGCCCTGGGAACTAGTCCCTGGGCTCCGTGCTGATCTCCAAACAAGC
CGAATAAGTCTCACCTTAAGCTGGACCCTCCTCTGGAATCTGAAGCTCCCTCCACCGTCAGAGT
TAGCCTGAGAGGGACTCACTGCTGCTGGATGGGCTCTATCCCTAGAGCATCAGCTGGTGTTCCA
GCAGCTTGTTCCCCGAGCCTCCTGAGTAGCATTATAGAGAGGTCTGTTCCAGAAAGCGAAAGCC
AGATCCAGCTGCCCTCCTGGAGCAGAACAACACAATTTCCAGGCTGTTCCTGTGGCCTCTCCCT
CTTCCAGTCTGCCCCACTTGGTGTCAGCGATGAGCTCCTGCAACTTCACTCACGCCACCTTCAT
GCTTATCGGTATTCCAGGACTGGAGGAAGCTCACTTTTGGTTTGGCTTCCCCCTACTTTCCATG
TACGCTGTAGCATTGTTTGGAAATTGCATTGTGGTCTTCATCGTGAGGACAGAGCGGAGCCTGC
ATGCGCCCATGTATCTTTTTCTCTGCATGCTGGCAGCTATTGATCTGGCTTTGTCCACCTCTAC
AATGCCCAAGATTCTCGCCCTCTTTTGGTTTGACTCCCGGGAGATTACTTTTGATGCCTGTCTC
ACCCAGATGTTCTTCATTCACGCTCTCTCAGCAATTGAATCTACCATCTTGCTGGCCATGGCCT
TTGACCGGTATGTGGCTATCTGCCACCCACTGCGTCACGCTGCTGTGCTCAACAATACAGTAAC
AGTCCAAATCGGCATGGTGGCTCTGGTCCGGGGATCCCTATTCTTTTTCCCACTCCCACTGCTG
ATCAAGCGACTGGCCTTCTGCCACTCCAATGTGCTCTCCCACTCCTATTGTGTTCACCAGGATG
TGATGAAGTTGGCCTATACAGACACATTGCCCAATGTAGTCTATGGTCTAACTGCCATTCTGCT
AGTCATGGGTGTAGATGTCATGTTCATCTCCTTGTCCTATTTCCTGATTATACGAGCAGTTCTG
CAATTGCCTTCCAAGTCTGAGCGAGCTAAGGCATTTGGAACCTGTGTGTCACACATTGGTGTAG
TCCTGGCTTTCTATGTCCCACTCATTGGCCTGTCAGTAGTGCACCGTTTTGGAAACAGCCTGGA
TCCCATTGTGCATGTTCTCATGGGCGATGTCTACCTGCTGCTGCCTCCTGTGATCAATCCCATC
ATCTACGGTGCTAAGACCAAACAGATCAGAACACGGGTGCTGGCTATGTTCAAGATCAGTTGTG
ACAAGGACATTGAAGCTGGAGGAAACACGTGACCCTTACCGTTCTATCACCCTTGTCCTACATG
GCTTAATATAATGATTAATAATTCATCACACCGGCCTAACTCCAGTCACCCAAAAGCACATTAG
TGCTTTAACCTGAATGGGACAGTGAACTAAAGTATGGTTTATCTTCATCATGGATACAATGTGA
AATATCTATCATGTGTTTTAAAGCTTGTGCTATAAAATGAGACCCATTGATAATACTAAATGAA
ACAACTAGGATTTGTGATTTAAACTAATTGTTTGTGATTTGAATGAGATATGTTGAAATTACTA
GCAACTTTTTTTATTCCTACTTCCTTTGTTGTAAAGCTATCTGTAATGTTTAACTTCTGAATTG
TGGAACATGGAGCTGACAGTATGGTAGCCAAGGGTTTCCTCACTCATTTCAATGCTATTATTGA
CTACCCAGGAACATATATGAGCTCTAAATAATATGGCTCATGAATGTATCATGTAATGTGTTCC
AGTCCCTGCGTTAAGTGCTTTTCAGACTTTCTGTGATCTTGCTCTTTTCCCAAGGAAGATACCA
CTGTTGCCTGCCACAACATGTGACAAAGACTTTAATGAGTAAAGAAACTTTCTTGAATGTTCTG
TGCCAAGATTTTAAATTAAATTGGATAATTGAATACATTTGCTTTACCACCATGTTATATTGCT
TCCTGTTTAACATCTGCCATCTATTTCCTCTGCCTATTACAAATCCTGCTTTCTCTCTGCCGTG
TGCTAGCATGGACGTCTTTGTGTTTGTGGTAAGTGATTAACCCTGTCCTGGTGGAGGGCAACAA
ACTGTTCAGCATGACAGAGTAGCTGCTTCTTCTCATATGAACAGAGGAGATTTAAATTTTTTAG
TCTCTTACATATCCTTGATTGTGTCCTCTTTGTATTGTGTCCTGTAGCTGTCAAATCTCTTAAA
TGTATAACATAAGATATTGTCTGATTCTTGACTTAGGTATCAAACAACATAATAATTTATCTTA
AAATGTTCAGTATTATTTTTACTGTTTTAATGTTCATAAGTAATGTTGGGAGACATGAGTGATT
TCCCCCAGTCCTCTTTACCAACAGTGCAAAGGGCCTGCCAGGTATGGGTTGCACAACTATAAAG
ATGTTGAATGAACTTATGTAGAATATTCCCTTTGTATTGAGTGGATGATGAAAATATTCTTAGA
TTAGGTTATTAATGACACCTACAAAATAATGTTAATATATTCGATGTATGCATAATGCTTAAAA
TGCTGAGATTTATGTAGTATGTATCTGCCACAATAAAAAATTATTTAAAATAATGTAAAA

hide sequence

RefSeq Acc Id:

XM_008759670 ⟹ XP_008757892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	166,604,972 - 166,616,141 (-)	NCBI
mRatBN7.2	1	157,193,051 - 157,204,769 (-)	NCBI
Rnor_6.0	1	167,906,030 - 167,917,110 (-)	NCBI

Sequence:

show sequence

GGCATCTTCTGGCACTATGAAAAGCACCCAGCAGGGGGAAGCTTCTAGATCCCTAGAGCATCAG
CTGGTGTTCCAGCAGCTTGTTCCCCGAGCCTCCTGAGTAGCATTATAGAGAGGTCTGTTCCAGA
AAGCGAAAGCCAGATCCAGCTGCCCTCCTGGAGCAGAACAACACAATTTCCAGGCTGTTCCTGT
GGCCTCTCCCTCTTCCAGTCTGCCCCACTTGGTGTCAGCGATGAGCTCCTGCAACTTCACTCAC
GCCACCTTCATGCTTATCGGTATTCCAGGACTGGAGGAAGCTCACTTTTGGTTTGGCTTCCCCC
TACTTTCCATGTACGCTGTAGCATTGTTTGGAAATTGCATTGTGGTCTTCATCGTGAGGACAGA
GCGGAGCCTGCATGCGCCCATGTATCTTTTTCTCTGCATGCTGGCAGCTATTGATCTGGCTTTG
TCCACCTCTACAATGCCCAAGATTCTCGCCCTCTTTTGGTTTGACTCCCGGGAGATTACTTTTG
ATGCCTGTCTCACCCAGATGTTCTTCATTCACGCTCTCTCAGCAATTGAATCTACCATCTTGCT
GGCCATGGCCTTTGACCGGTATGTGGCTATCTGCCACCCACTGCGTCACGCTGCTGTGCTCAAC
AATACAGTAACAGTCCAAATCGGCATGGTGGCTCTGGTCCGGGGATCCCTATTCTTTTTCCCAC
TCCCACTGCTGATCAAGCGACTGGCCTTCTGCCACTCCAATGTGCTCTCCCACTCCTATTGTGT
TCACCAGGATGTGATGAAGTTGGCCTATACAGACACATTGCCCAATGTAGTCTATGGTCTAACT
GCCATTCTGCTAGTCATGGGTGTAGATGTCATGTTCATCTCCTTGTCCTATTTCCTGATTATAC
GAGCAGTTCTGCAATTGCCTTCCAAGTCTGAGCGAGCTAAGGCATTTGGAACCTGTGTGTCACA
CATTGGTGTAGTCCTGGCTTTCTATGTCCCACTCATTGGCCTGTCAGTAGTGCACCGTTTTGGA
AACAGCCTGGATCCCATTGTGCATGTTCTCATGGGCGATGTCTACCTGCTGCTGCCTCCTGTGA
TCAATCCCATCATCTACGGTGCTAAGACCAAACAGATCAGAACACGGGTGCTGGCTATGTTCAA
GATCAGTTGTGACAAGGACATTGAAGCTGGAGGAAACACGTGACCCTTACCGTTCTATCACCCT
TGTCCTACATGGCTTAATATAATGATTAATAATTCATCACACCGGCCTAACTCCAGTCACCCAA
AAGCACATTAGTGCTTTAACCTGAATGGGACAGTGAACTAAAGTATGGTTTATCTTCATCATGG
ATACAATGTGAAATATCTATCATGTGTTTTAAAGCTTGTGCTATAAAATGAGACCCATTGATAA
TACTAAATGAAACAACTAGGATTTGTGATTTAAACTAATTGTTTGTGATTTGAATGAGATATGT
TGAAATTACTAGCAACTTTTTTTATTCCTACTTCCTTTGTTGTAAAGCTATCTGTAATGTTTAA
CTTCTGAATTGTGGAACATGGAGCTGACAGTATGGTAGCCAAGGGTTTCCTCACTCATTTCAAT
GCTATTATTGACTACCCAGGAACATATATGAGCTCTAAATAATATGGCTCATGAATGTATCATG
TAATGTGTTCCAGTCCCTGCGTTAAGTGCTTTTCAGACTTTCTGTGATCTTGCTCTTTTCCCAA
GGAAGATACCACTGTTGCCTGCCACAACATGTGACAAAGACTTTAATGAGTAAAGAAACTTTCT
TGAATGTTCTGTGCCAAGATTTTAAATTAAATTGGATAATTGAATACATTTGCTTTACCACCAT
GTTATATTGCTTCCTGTTTAACATCTGCCATCTATTTCCTCTGCCTATTACAAATCCTGCTTTC
TCTCTGCCGTGTGCTAGCATGGACGTCTTTGTGTTTGTGGTAAGTGATTAACCCTGTCCTGGTG
GAGGGCAACAAACTGTTCAGCATGACAGAGTAGCTGCTTCTTCTCATATGAACAGAGGAGATTT
AAATTTTTTAGTCTCTTACATATCCTTGATTGTGTCCTCTTTGTATTGTGTCCTGTAGCTGTCA
AATCTCTTAAATGTATAACATAAGATATTGTCTGATTCTTGACTTAGGTATCAAACAACATAAT
AATTTATCTTAAAATGTTCAGTATTATTTTTACTGTTTTAATGTTCATAAGTAATGTTGGGAGA
CATGAGTGATTTCCCCCAGTCCTCTTTACCAACAGTGCAAAGGGCCTGCCAGGTATGGGTTGCA
CAACTATAAAGATGTTGAATGAACTTATGTAGAATATTCCCTTTGTATTGAGTGGATGATGAAA
ATATTCTTAGATTAGGTTATTAATGACACCTACAAAATAATGTTAATATATTCGATGTATGCAT
AATGCTTAAAATGCTGAGATTTATGTAGTATGTATCTGCCACAATAAAAAATTATTTAAAATAA
TGTAAAA

hide sequence

RefSeq Acc Id:

XM_008759671 ⟹ XP_008757893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	166,604,972 - 166,639,634 (-)	NCBI
mRatBN7.2	1	157,193,051 - 157,227,707 (-)	NCBI
Rnor_6.0	1	167,906,030 - 167,940,688 (-)	NCBI

Sequence:

show sequence

TGCAGCAAATTTTTTAGAATCCTGGGCAACCCTAAGTCCCATGAAATGTCTGCCTTCAACTAGA
CTGAGTTCTCCAAATGAGTACATAACCTTCCACTTTTATGAACTTTGATCCCTAGAGCATCAGC
TGGTGTTCCAGCAGCTTGTTCCCCGAGCCTCCTGAGTAGCATTATAGAGAGGTCTGTTCCAGAA
AGCGAAAGCCAGATCCAGCTGCCCTCCTGGAGCAGAACAACACAATTTCCAGGCTGTTCCTGTG
GCCTCTCCCTCTTCCAGTCTGCCCCACTTGGTGTCAGCGATGAGCTCCTGCAACTTCACTCACG
CCACCTTCATGCTTATCGGTATTCCAGGACTGGAGGAAGCTCACTTTTGGTTTGGCTTCCCCCT
ACTTTCCATGTACGCTGTAGCATTGTTTGGAAATTGCATTGTGGTCTTCATCGTGAGGACAGAG
CGGAGCCTGCATGCGCCCATGTATCTTTTTCTCTGCATGCTGGCAGCTATTGATCTGGCTTTGT
CCACCTCTACAATGCCCAAGATTCTCGCCCTCTTTTGGTTTGACTCCCGGGAGATTACTTTTGA
TGCCTGTCTCACCCAGATGTTCTTCATTCACGCTCTCTCAGCAATTGAATCTACCATCTTGCTG
GCCATGGCCTTTGACCGGTATGTGGCTATCTGCCACCCACTGCGTCACGCTGCTGTGCTCAACA
ATACAGTAACAGTCCAAATCGGCATGGTGGCTCTGGTCCGGGGATCCCTATTCTTTTTCCCACT
CCCACTGCTGATCAAGCGACTGGCCTTCTGCCACTCCAATGTGCTCTCCCACTCCTATTGTGTT
CACCAGGATGTGATGAAGTTGGCCTATACAGACACATTGCCCAATGTAGTCTATGGTCTAACTG
CCATTCTGCTAGTCATGGGTGTAGATGTCATGTTCATCTCCTTGTCCTATTTCCTGATTATACG
AGCAGTTCTGCAATTGCCTTCCAAGTCTGAGCGAGCTAAGGCATTTGGAACCTGTGTGTCACAC
ATTGGTGTAGTCCTGGCTTTCTATGTCCCACTCATTGGCCTGTCAGTAGTGCACCGTTTTGGAA
ACAGCCTGGATCCCATTGTGCATGTTCTCATGGGCGATGTCTACCTGCTGCTGCCTCCTGTGAT
CAATCCCATCATCTACGGTGCTAAGACCAAACAGATCAGAACACGGGTGCTGGCTATGTTCAAG
ATCAGTTGTGACAAGGACATTGAAGCTGGAGGAAACACGTGACCCTTACCGTTCTATCACCCTT
GTCCTACATGGCTTAATATAATGATTAATAATTCATCACACCGGCCTAACTCCAGTCACCCAAA
AGCACATTAGTGCTTTAACCTGAATGGGACAGTGAACTAAAGTATGGTTTATCTTCATCATGGA
TACAATGTGAAATATCTATCATGTGTTTTAAAGCTTGTGCTATAAAATGAGACCCATTGATAAT
ACTAAATGAAACAACTAGGATTTGTGATTTAAACTAATTGTTTGTGATTTGAATGAGATATGTT
GAAATTACTAGCAACTTTTTTTATTCCTACTTCCTTTGTTGTAAAGCTATCTGTAATGTTTAAC
TTCTGAATTGTGGAACATGGAGCTGACAGTATGGTAGCCAAGGGTTTCCTCACTCATTTCAATG
CTATTATTGACTACCCAGGAACATATATGAGCTCTAAATAATATGGCTCATGAATGTATCATGT
AATGTGTTCCAGTCCCTGCGTTAAGTGCTTTTCAGACTTTCTGTGATCTTGCTCTTTTCCCAAG
GAAGATACCACTGTTGCCTGCCACAACATGTGACAAAGACTTTAATGAGTAAAGAAACTTTCTT
GAATGTTCTGTGCCAAGATTTTAAATTAAATTGGATAATTGAATACATTTGCTTTACCACCATG
TTATATTGCTTCCTGTTTAACATCTGCCATCTATTTCCTCTGCCTATTACAAATCCTGCTTTCT
CTCTGCCGTGTGCTAGCATGGACGTCTTTGTGTTTGTGGTAAGTGATTAACCCTGTCCTGGTGG
AGGGCAACAAACTGTTCAGCATGACAGAGTAGCTGCTTCTTCTCATATGAACAGAGGAGATTTA
AATTTTTTAGTCTCTTACATATCCTTGATTGTGTCCTCTTTGTATTGTGTCCTGTAGCTGTCAA
ATCTCTTAAATGTATAACATAAGATATTGTCTGATTCTTGACTTAGGTATCAAACAACATAATA
ATTTATCTTAAAATGTTCAGTATTATTTTTACTGTTTTAATGTTCATAAGTAATGTTGGGAGAC
ATGAGTGATTTCCCCCAGTCCTCTTTACCAACAGTGCAAAGGGCCTGCCAGGTATGGGTTGCAC
AACTATAAAGATGTTGAATGAACTTATGTAGAATATTCCCTTTGTATTGAGTGGATGATGAAAA
TATTCTTAGATTAGGTTATTAATGACACCTACAAAATAATGTTAATATATTCGATGTATGCATA
ATGCTTAAAATGCTGAGATTTATGTAGTATGTATCTGCCACAATAAAAAATTATTTAAAATAAT
GTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_775415	(Get FASTA)	NCBI Sequence Viewer
	XP_008757891	(Get FASTA)	NCBI Sequence Viewer
	XP_008757892	(Get FASTA)	NCBI Sequence Viewer
	XP_008757893	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD12761	(Get FASTA)	NCBI Sequence Viewer
	EDM18165	(Get FASTA)	NCBI Sequence Viewer
	EDM18166	(Get FASTA)	NCBI Sequence Viewer
	EDM18167	(Get FASTA)	NCBI Sequence Viewer
	EDM18168	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025097
	ENSRNOP00000025097.2
	ENSRNOP00000092126
	ENSRNOP00000092126.1
	ENSRNOP00065044281
	ENSRNOP00065044286
GenBank Protein	O88628	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_775415 ⟸ NM_173293

- UniProtKB:

O88628 (UniProtKB/Swiss-Prot), G3V8E6 (UniProtKB/TrEMBL), A6I763 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSCNFTHATFMLIGIPGLEEAHFWFGFPLLSMYAVALFGNCIVVFIVRTERSLHAPMYLFLCM
LAAIDLALSTSTMPKILALFWFDSREITFDACLAQMFFIHALSAIESTILLAMAFDRYVAICHP
LRHAAVLNNTVTVQIGMVALVRGSLFFFPLPLLIKRLAFCHSNVLSHSYCVHQDVMKLAYTDTL
PNVVYGLTAILLVMGVDVMFISLSYFLIIRAVLQLPSKSERAKAFGTCVSHIGVVLAFYVPLIG
LSVVHRFGNSLDPIVHVLMGDVYLLLPPVINPIIYGAKTKQIRTRVLAMFKISCDKDIEAGGNT

hide sequence

RefSeq Acc Id:	XP_008757893 ⟸ XM_008759671
- Peptide Label:	isoform X1
- UniProtKB:	O88628 (UniProtKB/Swiss-Prot), G3V8E6 (UniProtKB/TrEMBL), A6I763 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSCNFTHATFMLIGIPGLEEAHFWFGFPLLSMYAVALFGNCIVVFIVRTERSLHAPMYLFLCM LAAIDLALSTSTMPKILALFWFDSREITFDACLTQMFFIHALSAIESTILLAMAFDRYVAICHP LRHAAVLNNTVTVQIGMVALVRGSLFFFPLPLLIKRLAFCHSNVLSHSYCVHQDVMKLAYTDTL PNVVYGLTAILLVMGVDVMFISLSYFLIIRAVLQLPSKSERAKAFGTCVSHIGVVLAFYVPLIG LSVVHRFGNSLDPIVHVLMGDVYLLLPPVINPIIYGAKTKQIRTRVLAMFKISCDKDIEAGGNT hide sequence

RefSeq Acc Id:	XP_008757891 ⟸ XM_008759669
- Peptide Label:	isoform X1
- UniProtKB:	O88628 (UniProtKB/Swiss-Prot), G3V8E6 (UniProtKB/TrEMBL), A6I763 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSCNFTHATFMLIGIPGLEEAHFWFGFPLLSMYAVALFGNCIVVFIVRTERSLHAPMYLFLCM LAAIDLALSTSTMPKILALFWFDSREITFDACLTQMFFIHALSAIESTILLAMAFDRYVAICHP LRHAAVLNNTVTVQIGMVALVRGSLFFFPLPLLIKRLAFCHSNVLSHSYCVHQDVMKLAYTDTL PNVVYGLTAILLVMGVDVMFISLSYFLIIRAVLQLPSKSERAKAFGTCVSHIGVVLAFYVPLIG LSVVHRFGNSLDPIVHVLMGDVYLLLPPVINPIIYGAKTKQIRTRVLAMFKISCDKDIEAGGNT hide sequence

RefSeq Acc Id:	XP_008757892 ⟸ XM_008759670
- Peptide Label:	isoform X1
- UniProtKB:	O88628 (UniProtKB/Swiss-Prot), G3V8E6 (UniProtKB/TrEMBL), A6I763 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSCNFTHATFMLIGIPGLEEAHFWFGFPLLSMYAVALFGNCIVVFIVRTERSLHAPMYLFLCM LAAIDLALSTSTMPKILALFWFDSREITFDACLTQMFFIHALSAIESTILLAMAFDRYVAICHP LRHAAVLNNTVTVQIGMVALVRGSLFFFPLPLLIKRLAFCHSNVLSHSYCVHQDVMKLAYTDTL PNVVYGLTAILLVMGVDVMFISLSYFLIIRAVLQLPSKSERAKAFGTCVSHIGVVLAFYVPLIG LSVVHRFGNSLDPIVHVLMGDVYLLLPPVINPIIYGAKTKQIRTRVLAMFKISCDKDIEAGGNT hide sequence

RefSeq Acc Id:

ENSRNOP00000025097 ⟸ ENSRNOT00000025097

RefSeq Acc Id:

ENSRNOP00000092126 ⟸ ENSRNOT00000115264

Protein Domains

G-protein coupled receptors family 1 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O88628-F1-model_v2	AlphaFold	O88628	1-320	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628858	AgrOrtholog
BioCyc Gene	G2FUF-58220	BioCyc
Ensembl Genes	ENSRNOG00000018606	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00065031222	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025097.6	UniProtKB/TrEMBL
	ENSRNOT00000115264	ENTREZGENE
	ENSRNOT00000115264.1	UniProtKB/TrEMBL
	ENSRNOT00065053843	UniProtKB/Swiss-Prot
	ENSRNOT00065053848	UniProtKB/Swiss-Prot
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:170816	UniProtKB/Swiss-Prot
NCBI Gene	170816	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR 51E2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 56B1-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Olr59	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018606	RatGTEx
	ENSRNOG00065031222	RatGTEx
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6I763	ENTREZGENE, UniProtKB/TrEMBL
	A6I764_RAT	UniProtKB/TrEMBL
	G3V8E6	ENTREZGENE, UniProtKB/TrEMBL
	O51E2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-03-01	Olr59	olfactory receptor 59	Olfr78	olfactory receptor 78	Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Olfr78	olfactory receptor 78			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in distinct regions of the brain and olfactory epithelium	633438

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD