Advanced Search (OLGA)

Gene: Abi2 (abl-interactor 2) Rattus norvegicus

Analyze

Symbol:

Abi2

Name:

abl-interactor 2

RGD ID:

628771

Description:

Predicted to enable identical protein binding activity; signaling adaptor activity; and ubiquitin protein ligase binding activity. Predicted to contribute to small GTPase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; lens fiber cell morphogenesis; and regulation of plasma membrane bounded cell projection organization. Predicted to act upstream of or within several processes, including camera-type eye development; dendrite development; and learning or memory. Predicted to be located in several cellular components, including actin filament; dendrite; and filopodium tip. Predicted to be part of SCAR complex. Predicted to be active in several cellular components, including adherens junction; glutamatergic synapse; and postsynaptic actin cytoskeleton. Orthologous to human ABI2 (abl interactor 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

abl interactor 2; rCG22366-like; thyroid hormone responsive protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABI2 (abl interactor 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Abi2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Abi2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABI2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABI2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abi2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABI2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABI2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abi2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Abi2 (abl interactor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Abi2 (abl interactor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Abi2 (abl interactor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ABI2 (abl interactor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ABI2 (abl interactor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abi2a (abl-interactor 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abi2a (abl-interactor 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	abi2b (abl-interactor 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Abi	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Abi	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Caenorhabditis elegans (roundworm):	abi-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	abi-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abi2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abi2	Alliance	DIOPT (OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	69,321,072 - 69,490,630 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	69,321,150 - 69,490,597 (+)	Ensembl				GRCr8
mRatBN7.2	9	61,827,186 - 61,905,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,827,139 - 61,905,699 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	70,329,109 - 70,407,619 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,444,680 - 75,523,198 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,763,381 - 73,841,891 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	67,234,612 - 67,284,504 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	67,234,303 - 67,282,600 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	67,048,998 - 67,098,841 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	59,028,651 - 59,079,887 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	59,284,973 - 59,332,321 (+)	NCBI		Celera
RGSC_v3.1	9	59,175,632 - 59,226,860 (+)	NCBI
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,5-hexanedione (EXP)

2-butoxyethanol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

5-fluorouracil (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

carbendazim (EXP)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclophosphamide (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

irinotecan (ISO)

ivermectin (ISO)

lithium chloride (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (EXP,ISO)

paracetamol (ISO)

paraquat (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

camera-type eye development (ISO)

cell migration (ISO)

cell projection morphogenesis (IBA)

dendrite development (ISO)

learning or memory (ISO)

lens fiber cell morphogenesis (ISO)

mitophagy (ISO)

neuron migration (IBA,ISO)

peptidyl-tyrosine phosphorylation (ISO)

positive regulation of Arp2/3 complex-mediated actin nucleation (ISO)

positive regulation of lamellipodium assembly (ISO)

postsynapse organization (ISO)

postsynaptic actin cytoskeleton organization (ISO)

Rac protein signal transduction (ISO)

regulation of dendritic spine morphogenesis (ISO)

zonula adherens assembly (ISO)

Cellular Component

actin filament (ISO)

actin-based cell projection (IBA)

adherens junction (ISO)

cytoskeleton (IEA)

cytosol (ISO)

dendrite (ISO)

dendritic spine (ISO)

filopodium (IEA)

filopodium tip (ISO)

glutamatergic synapse (ISO)

lamellipodium (IBA,IEA,ISO)

nucleoplasm (ISO)

postsynaptic actin cytoskeleton (ISO)

SCAR complex (IBA,ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

signaling adaptor activity (IBA,ISO)

small GTPase binding (ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Cloning and characterization of a complementary DNA for a thyroid hormone-responsive protein in mature rat cerebral tissue.	Shah GN, etal., Biochem J 1997 Oct 15;327 ( Pt 2):617-23.

Additional References at PubMed

PMID:7590236	PMID:11516653	PMID:12477932	PMID:15572692	PMID:17101133	PMID:18632609	PMID:19523119	PMID:21107423	PMID:25416956	PMID:28131823	PMID:29892012

Genomics

Comparative Map Data

Abi2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	69,321,072 - 69,490,630 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	69,321,150 - 69,490,597 (+)	Ensembl				GRCr8
mRatBN7.2	9	61,827,186 - 61,905,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,827,139 - 61,905,699 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	70,329,109 - 70,407,619 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,444,680 - 75,523,198 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,763,381 - 73,841,891 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	67,234,612 - 67,284,504 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	67,234,303 - 67,282,600 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	67,048,998 - 67,098,841 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	59,028,651 - 59,079,887 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	59,284,973 - 59,332,321 (+)	NCBI		Celera
RGSC_v3.1	9	59,175,632 - 59,226,860 (+)	NCBI
Cytogenetic Map	9	q32	NCBI

ABI2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	203,328,394 - 203,432,169 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	203,328,252 - 203,447,728 (+)	Ensembl			hg38	GRCh38
GRCh37	2	204,193,117 - 204,296,892 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	203,901,248 - 204,005,137 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	204,018,667 - 204,117,837	NCBI
Celera	2	197,986,427 - 198,051,711 (+)	NCBI		Celera
Cytogenetic Map	2	q33.2	NCBI
HuRef	2	196,040,502 - 196,144,417 (+)	NCBI		HuRef
CHM1_1	2	204,199,587 - 204,303,476 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	203,810,332 - 203,914,077 (+)	NCBI		T2T-CHM13v2.0

Abi2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	60,444,927 - 60,521,104 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	60,448,778 - 60,520,317 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	60,405,768 - 60,481,945 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	60,409,619 - 60,481,158 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	60,466,642 - 60,538,002 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	60,354,344 - 60,425,704 (+)	NCBI		MGSCv36	mm8
Celera	1	60,950,060 - 60,997,005 (+)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.47	NCBI

Abi2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	11,451,851 - 11,562,696 (-)	Ensembl
ChiLan1.0	NW_004955457	11,451,851 - 11,562,692 (-)	NCBI	ChiLan1.0	ChiLan1.0

ABI2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	105,931,093 - 106,035,513 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	105,949,078 - 106,050,507 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	90,561,708 - 90,663,072 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	208,701,637 - 208,802,305 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	208,702,092 - 208,797,499 (+)	Ensembl			panPan2	panpan1.1

ABI2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	12,162,815 - 12,278,505 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	12,162,392 - 12,282,395 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	13,045,728 - 13,165,154 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	12,098,548 - 12,218,098 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	12,098,507 - 12,214,606 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	12,055,942 - 12,175,414 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	12,025,827 - 12,145,021 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	12,019,907 - 12,139,569 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Abi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	160,346,621 - 160,466,671 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936631	30,199 - 98,511 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936631	30,109 - 101,748 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABI2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	106,776,631 - 106,900,333 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	106,776,627 - 106,903,889 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	118,142,372 - 118,186,661 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABI2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	89,074,333 - 89,314,144 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	89,075,798 - 89,181,235 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	110,196,329 - 110,307,099 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abi2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	12,998,315 - 13,091,370 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624765	12,971,867 - 13,091,446 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Abi2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	134,533,085 - 134,682,719 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Abi2
1290 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	766
Count of miRNA genes:	305
Interacting mature miRNAs:	405
Transcripts:	ENSRNOT00000050179
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	57460497	78547958	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	68875497	73185088	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

RH138713

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,903,283 - 61,903,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	67,283,759 - 67,283,997	NCBI	Rnor6.0
Rnor_5.0	9	67,098,096 - 67,098,334	UniSTS	Rnor5.0
RGSC_v3.4	9	59,079,142 - 59,079,380	UniSTS	RGSC3.4
Celera	9	59,331,576 - 59,331,814	UniSTS
RH 3.4 Map	9	508.7	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH138748

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,901,850 - 61,901,982 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	67,282,323 - 67,282,454	NCBI	Rnor6.0
Rnor_5.0	9	67,096,660 - 67,096,791	UniSTS	Rnor5.0
RGSC_v3.4	9	59,077,705 - 59,077,836	UniSTS	RGSC3.4
Celera	9	59,330,202 - 59,330,333	UniSTS
RH 3.4 Map	9	507.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

BE117293

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,894,918 - 61,895,086 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	67,275,397 - 67,275,564	NCBI	Rnor6.0
Rnor_5.0	9	67,089,734 - 67,089,901	UniSTS	Rnor5.0
Celera	9	59,323,493 - 59,323,660	UniSTS
RH 3.4 Map	9	497.2	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001393698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_173143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U94904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050179 ⟹ ENSRNOP00000050008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,158 - 69,400,379 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,827,139 - 61,902,723 (+)	Ensembl
Rnor_6.0 Ensembl	9	67,234,303 - 67,282,600 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096759 ⟹ ENSRNOP00000078640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,205 - 69,399,706 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,827,284 - 61,905,699 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111854 ⟹ ENSRNOP00000082875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,205 - 69,399,706 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,827,284 - 61,905,699 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113763 ⟹ ENSRNOP00000078426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,205 - 69,399,706 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,827,284 - 61,905,699 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117396 ⟹ ENSRNOP00000080678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,158 - 69,398,230 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,827,340 - 61,904,010 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119284 ⟹ ENSRNOP00000090595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,150 - 69,431,599 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,827,284 - 61,905,699 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123655 ⟹ ENSRNOP00000106890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,150 - 69,419,750 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139680 ⟹ ENSRNOP00000112288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,150 - 69,431,599 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149612 ⟹ ENSRNOP00000112364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,150 - 69,490,597 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162455 ⟹ ENSRNOP00000099822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,321,158 - 69,398,022 (+)	Ensembl

RefSeq Acc Id:

NM_001393698 ⟹ NP_001380627

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,205 - 69,399,706 (+)	NCBI
mRatBN7.2	9	61,827,186 - 61,905,703 (+)	NCBI

RefSeq Acc Id:

NM_173143 ⟹ NP_775166

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,205 - 69,399,706 (+)	NCBI
mRatBN7.2	9	61,827,186 - 61,905,703 (+)	NCBI
Rnor_6.0	9	67,234,612 - 67,284,504 (+)	NCBI
Rnor_5.0	9	67,048,998 - 67,098,841 (+)	NCBI
RGSC_v3.4	9	59,028,651 - 59,079,887 (+)	RGD
Celera	9	59,284,973 - 59,332,321 (+)	NCBI

Sequence:

show sequence

CCAAAGCGTACACCACTCAATCCTTAGCAAGTGTTGCATATCTGATAAACACCTTGGCCAACAA
TGTCCTACAGATGGCTGGATATTCAGGCATCGCAGTTACGGAGAATGGAATCTTCAATCAACCA
TATTTCACAAACAGTTGATATTCATAAAGAGAAAGTGGCAAGAAGAGAAATTGGTATTTTGACT
ACCAATAAAAACACTTCAAGGACCCATAAGATTATTGCACCAGCCAGCCTTGAGCGGCCAGTCC
GTTATATTCGAAAACCTATTGACTACACAATTTTAGATGACATTGGACATGGCGTAAAGGTGAG
TACCCAGAATATGAAGATGGGTGGACTGCCACGTACAACACCTCCAACTCAGAAGCCCCCAAGT
CCCCCTATGTCAGGGAAGGGGACACTTGGGCGGCACTCCCCCTATCGAACACTGGAGCCAGTGC
GTCCTCCAGTGGTACCAAATGATTACGTACCTAGCCCAACCCGTAATATGGCTCCCTCGCAGCA
GAGCCCTGTGAGGACAGCTTCTGTGAATCAAAGAAATCGAACTTACAGCAGTGGGAGCAGTGGA
GGAAGCCACCCAAGTAGTCGGAGCAGCAGTCGGGAGAACAGCGGAAGTGGTAGTGTGGGGGTTC
CCATCGCTGTTCCTACTCCGTCTCCTCCTAGCGTCTTTCCAGGTCATCCTGTTCAGTTCTACAG
CATGAATAGGCCTGCCTCTCGCCATACGCCACCCACAATAGGGGGCTCATTGCCCTATAGACGC
CCTCCTTCCATAACTTCACAAACAAGCCTTCAGAATCAGATGAATGGAGGTCCTTTTTATAACC
AGAATCCAGTTTCAGATACACCACCTCCACCACCTCCTGTGGATGAGCCAGTGTTCGATGAGTC
CCCACCTCCACCACCTCCTCCAGAGGACTCAGAAGAGGAGGAAGCAGCTGTGGTTGAGTACAGC
GATCCTTACGCCGAAGAGGACCCACCATGGGCACCAAGGTCTTACTTGGAAAAGGTCGTGGCAA
TCTATGATTATACGAAAGACAAGGAGGATGAGCTGTCCTTTCAGGAAGGAGCCATTATCTATGT
CATCAAGAAGAACGATGATGGTTGGTATGAGGGAGTTATGAATGGAGTGACTGGGCTCTTCCCT
GGGAATTACGTTGAGTCCCATCATGCATTATTCGGAGTAAAGCCCAGCACAGCCGTGCTTCTTG
TTCATGGCTCAGGTATTCCCAGATTAGCTAGAGGCCCTGGGAATTCCCTCCCAGGAAATATGAT
GAAGCATACAAATGATAAAGTTACTCTTTTTATTACTGTTTTGGTTTATCCCCTAGTATCAAAA
CCTGAAAGCCAAGTCTCGAACAAGTGGAACTTCTTGGGTCACTTTGCATTATGCCTATCTAGAT
TGAAAAATGCCATTTCTCAGTCACGGAAAGGCACTACCAACATCGAACATATAGCTAAAATATA
TAGGACCAAGACTAACTTGAGAAAAAAATCTGGGATCTTCTCAGGAATACTGTACACCCTTGGA
TTTCTCTGTCCTGCAGAATCTGAGACATTGGATGCTCATTGCCTCTGCTTTGGGGCTAACCTCA
TGGCCTGGTGGACACCCTTGCCCTTTACTTTCAGTATATGGAGAGGTTGGTTCCAGTGTTTAAA
TACTTTATTTAACTACTTTTGGATTGCTTAAAAAGGCTGTTTTTCTTCTTTAACACTGTAAATC
CTGTGTTCTCTTAGCACTGGAGTGCTAGGTGAGTTAATCCCGAACTCCCTTGCATCCTGTCCTG
TTTGTAGATTATAAGGATGACAAAATGTGAGTCTCCAAACATTCCCAGGGTTGTTACCAGTTTG
ATTTTAATGCACTGTTGCATGAGACTGCATTGCTGATAGCAGCCAGTAAAACCGATGTGAAATG
TGGTAGGTACTTCAAGTACTGAGGTGAGCTTGCTGGACACAAAGGTTCCTAAGGAGCTCCAAGC
CTTGAGGCACTGTTTCAGAGTAGAGCCTAGGAAATCAGACCAGCTATTACTGTTCTTTTGATAT
TTAAACACCCCCCCCCACCTCTTTTAAGAAGAGACTAGTTGTAAGTCTCTGACAGTCACTGGAC
TGGGAATGAAAGGCTGCTACTGTGCTCTTGGACCATTATCAATGGCAGTGTTAGCTGATGCCAT
TTTGCTTCTCTCAGCCTATAGAAAAATCAAGTATCCTCCTGATTTGAAGTGATTAGACTTTAAA
GTAGCCACTCCTCGTAATAGTCTGAACCTTGTGAGTCAGAGTAAAGAGTTTACTGGAAAAGACT
AATATGGATAAAATACTTACCAGTCACACTGATGAAAACCAGTCTGTATTTGAAACAATTGGCA
TCCCCTCATCTACTGAAAAGAAGAGGAAGCAAAGCTGTTGTGATTCAGATGCAGGCCTTGCACA
TCTGTCTAGCGAGTCTAGAAGAACAAGTGTTGTAGATGCGAGAAGAAAGGCAGGCTGTAAGGAC
GCGCTAATACTCCACTCGTAGATCTGTTATCTGAGCCTGAGGCTTCAGTCTGTGGCAAGTCTCA
TACCCAAACAGTGTCCTTCTCAAGACCCTTTTTGCTTTAAGGTTGTAGGTTTTGTTTGTTTCAG
ACACGGTGCTCTTCTGCTTCTGCTTAGCCTCTCAAATATTAGGACTACAAGGAGGACCCTACAC
CAGGAGCAGGATTTTTGGTTTTAATACACGTTGCATGCACATCAGCAGCTATTACACTTTTAGA
CTTTTTCTAAATGCTTTGGATTTTTCTTTAATTTGCTTCTAGTGCACTTTTCACTTCATGGTTT
TTGTTAGGTCATCTTGACTGTCTTCAGGATATGGCCCTGAAGCCCTCTGAACCTTTAGCTCCAT
TATGGATATAAGCAAGAGTGTATATGAACATTTAACTCTGAGTGTATTGGTACATGGAAACTTG
TGAAAATAGCTATACTAATTATTTATTTAAGTAGCCTTTTGCTGAACAAGCTTAGGGATTGATA
AGACATTGGAAACCCAGCCAACAGTTAGCTTTTTGTAGTCACAGAAACAACTGGTGGTAGGCAC
TGGAACACAGCTCACCTTCTGAACCTCTGCTGAATTAGGGTTTGCAGGAAACACGTGTGCAATC
CTTTGTGCTGAAGATGTGCGCTGGGGGTGATCCATGGGACAGGTGACCCCACTTGATCCATGGG
ACAGGTGACCCCACTCCTTGTATTATTGAGTACTGATGTGATTTTAAAAACAAAACACAGAATA
CGGTCTGTTGGCCTTTTTTCCACCCATTTTAAACTTTAGCAATTTTTTTTGAAATCTATGAATT
GTCAAGGAAGGATACTCTGAACAATGAGCCAGGCCTACAGGTAATTGGAGCCTTTTAATGTATG
TAATATTTTATAGATTGCATGCTATTAATACTGTGAGGTTATTTCCTGTTTTATTGTAAATTTT
CCCACTTATTTGCCCATTAACAAAAATATGGTTGATATTAGGAATTTTAAACAAATGTTGAAAC
TTTCTGACCAGATTGCAAGGCAGTTTACCGAGACACAGGTACTGAGGGCTCTGGTCAATCCTGA
AATGTCTGACTCTGTGCACAGTTTCTTTACCCTTTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063266748 ⟹ XP_063122818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,123 - 69,490,630 (+)	NCBI

RefSeq Acc Id:

XM_063266749 ⟹ XP_063122819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,124 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266750 ⟹ XP_063122820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,127 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266751 ⟹ XP_063122821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266752 ⟹ XP_063122822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266754 ⟹ XP_063122824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,128 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266755 ⟹ XP_063122825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,125 - 69,490,630 (+)	NCBI

RefSeq Acc Id:

XM_063266756 ⟹ XP_063122826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,126 - 69,433,338 (+)	NCBI

RefSeq Acc Id:

XM_063266757 ⟹ XP_063122827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266758 ⟹ XP_063122828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266759 ⟹ XP_063122829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,072 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266760 ⟹ XP_063122830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266761 ⟹ XP_063122831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266762 ⟹ XP_063122832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,128 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266763 ⟹ XP_063122833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,127 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266765 ⟹ XP_063122835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,126 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266766 ⟹ XP_063122836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,128 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266767 ⟹ XP_063122837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,127 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266768 ⟹ XP_063122838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,126 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266769 ⟹ XP_063122839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266770 ⟹ XP_063122840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266771 ⟹ XP_063122841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,127 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266772 ⟹ XP_063122842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,106 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266773 ⟹ XP_063122843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266774 ⟹ XP_063122844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,490,630 (+)	NCBI

RefSeq Acc Id:

XM_063266776 ⟹ XP_063122846

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266777 ⟹ XP_063122847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,078 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266778 ⟹ XP_063122848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266779 ⟹ XP_063122849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266780 ⟹ XP_063122850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266781 ⟹ XP_063122851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,132 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266782 ⟹ XP_063122852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,131 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266783 ⟹ XP_063122853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,073 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266784 ⟹ XP_063122854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,127 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266785 ⟹ XP_063122855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,125 - 69,490,630 (+)	NCBI

RefSeq Acc Id:

XM_063266787 ⟹ XP_063122857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266788 ⟹ XP_063122858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266789 ⟹ XP_063122859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,132 - 69,433,338 (+)	NCBI

RefSeq Acc Id:

XM_063266790 ⟹ XP_063122860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,131 - 69,433,338 (+)	NCBI

RefSeq Acc Id:

XM_063266791 ⟹ XP_063122861

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266792 ⟹ XP_063122862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,130 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266793 ⟹ XP_063122863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,123 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266794 ⟹ XP_063122864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,131 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266795 ⟹ XP_063122865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,124 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266796 ⟹ XP_063122866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,132 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266797 ⟹ XP_063122867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,129 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266798 ⟹ XP_063122868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,128 - 69,399,706 (+)	NCBI

RefSeq Acc Id:

XM_063266799 ⟹ XP_063122869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,321,123 - 69,399,706 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001380627	(Get FASTA)	NCBI Sequence Viewer
	NP_775166	(Get FASTA)	NCBI Sequence Viewer
	XP_063122818	(Get FASTA)	NCBI Sequence Viewer
	XP_063122819	(Get FASTA)	NCBI Sequence Viewer
	XP_063122820	(Get FASTA)	NCBI Sequence Viewer
	XP_063122821	(Get FASTA)	NCBI Sequence Viewer
	XP_063122822	(Get FASTA)	NCBI Sequence Viewer
	XP_063122824	(Get FASTA)	NCBI Sequence Viewer
	XP_063122825	(Get FASTA)	NCBI Sequence Viewer
	XP_063122826	(Get FASTA)	NCBI Sequence Viewer
	XP_063122827	(Get FASTA)	NCBI Sequence Viewer
	XP_063122828	(Get FASTA)	NCBI Sequence Viewer
	XP_063122829	(Get FASTA)	NCBI Sequence Viewer
	XP_063122830	(Get FASTA)	NCBI Sequence Viewer
	XP_063122831	(Get FASTA)	NCBI Sequence Viewer
	XP_063122832	(Get FASTA)	NCBI Sequence Viewer
	XP_063122833	(Get FASTA)	NCBI Sequence Viewer
	XP_063122835	(Get FASTA)	NCBI Sequence Viewer
	XP_063122836	(Get FASTA)	NCBI Sequence Viewer
	XP_063122837	(Get FASTA)	NCBI Sequence Viewer
	XP_063122838	(Get FASTA)	NCBI Sequence Viewer
	XP_063122839	(Get FASTA)	NCBI Sequence Viewer
	XP_063122840	(Get FASTA)	NCBI Sequence Viewer
	XP_063122841	(Get FASTA)	NCBI Sequence Viewer
	XP_063122842	(Get FASTA)	NCBI Sequence Viewer
	XP_063122843	(Get FASTA)	NCBI Sequence Viewer
	XP_063122844	(Get FASTA)	NCBI Sequence Viewer
	XP_063122846	(Get FASTA)	NCBI Sequence Viewer
	XP_063122847	(Get FASTA)	NCBI Sequence Viewer
	XP_063122848	(Get FASTA)	NCBI Sequence Viewer
	XP_063122849	(Get FASTA)	NCBI Sequence Viewer
	XP_063122850	(Get FASTA)	NCBI Sequence Viewer
	XP_063122851	(Get FASTA)	NCBI Sequence Viewer
	XP_063122852	(Get FASTA)	NCBI Sequence Viewer
	XP_063122853	(Get FASTA)	NCBI Sequence Viewer
	XP_063122854	(Get FASTA)	NCBI Sequence Viewer
	XP_063122855	(Get FASTA)	NCBI Sequence Viewer
	XP_063122857	(Get FASTA)	NCBI Sequence Viewer
	XP_063122858	(Get FASTA)	NCBI Sequence Viewer
	XP_063122859	(Get FASTA)	NCBI Sequence Viewer
	XP_063122860	(Get FASTA)	NCBI Sequence Viewer
	XP_063122861	(Get FASTA)	NCBI Sequence Viewer
	XP_063122862	(Get FASTA)	NCBI Sequence Viewer
	XP_063122863	(Get FASTA)	NCBI Sequence Viewer
	XP_063122864	(Get FASTA)	NCBI Sequence Viewer
	XP_063122865	(Get FASTA)	NCBI Sequence Viewer
	XP_063122866	(Get FASTA)	NCBI Sequence Viewer
	XP_063122867	(Get FASTA)	NCBI Sequence Viewer
	XP_063122868	(Get FASTA)	NCBI Sequence Viewer
	XP_063122869	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC53493	(Get FASTA)	NCBI Sequence Viewer
	AAH97273	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050008
	ENSRNOP00000050008.7
	ENSRNOP00000078426
	ENSRNOP00000078426.2
	ENSRNOP00000078640
	ENSRNOP00000078640.2
	ENSRNOP00000080678
	ENSRNOP00000080678.2
	ENSRNOP00000082875
	ENSRNOP00000082875.2
	ENSRNOP00000090595.2
	ENSRNOP00000099822
	ENSRNOP00000099822.1
	ENSRNOP00000106890.1
	ENSRNOP00000112288.1
	ENSRNOP00000112364
	ENSRNOP00000112364.1

RefSeq Acc Id:	NP_775166 ⟸ NM_173143
- Peptide Label:	isoform 1
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYRWLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPASLERPV RYIRKPIDYTILDDIGHGVKVSTQNMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPYRTLEPV RPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRTYSSGSSGGSHPSSRSSSRENSGSGSVGV PIAVPTPSPPSVFPGHPVQFYSMNRPASRHTPPTIGGSLPYRRPPSITSQTSLQNQMNGGPFYN QNPVSDTPPPPPPVDEPVFDESPPPPPPPEDSEEEEAAVVEYSDPYAEEDPPWAPRSYLEKVVA IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESHHALFGVKPSTAVLL VHGSGIPRLARGPGNSLPGNMMKHTNDKVTLFITVLVYPLVSKPESQVSNKWNFLGHFALCLSR LKNAISQSRKGTTNIEHIAKIYRTKTNLRKKSGIFSGILYTLGFLCPAESETLDAHCLCFGANL MAWWTPLPFTFSIWRGWFQCLNTLFNYFWIA hide sequence

Ensembl Acc Id:

ENSRNOP00000050008 ⟸ ENSRNOT00000050179

Ensembl Acc Id:

ENSRNOP00000078640 ⟸ ENSRNOT00000096759

Ensembl Acc Id:

ENSRNOP00000082875 ⟸ ENSRNOT00000111854

Ensembl Acc Id:

ENSRNOP00000078426 ⟸ ENSRNOT00000113763

Ensembl Acc Id:

ENSRNOP00000090595 ⟸ ENSRNOT00000119284

Ensembl Acc Id:

ENSRNOP00000080678 ⟸ ENSRNOT00000117396

RefSeq Acc Id:	NP_001380627 ⟸ NM_001393698
- Peptide Label:	isoform 2
- UniProtKB:	A6IPC7 (UniProtKB/TrEMBL), F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122829 ⟸ XM_063266759
- Peptide Label:	isoform X11
- UniProtKB:	A6IPC6 (UniProtKB/TrEMBL), F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122853 ⟸ XM_063266783
- Peptide Label:	isoform X33
- UniProtKB:	A6IPC8 (UniProtKB/TrEMBL), F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122847 ⟸ XM_063266777
- Peptide Label:	isoform X27
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122842 ⟸ XM_063266772
- Peptide Label:	isoform X23
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122818 ⟸ XM_063266748
- Peptide Label:	isoform X1
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122863 ⟸ XM_063266793
- Peptide Label:	isoform X42

RefSeq Acc Id:	XP_063122869 ⟸ XM_063266799
- Peptide Label:	isoform X48

RefSeq Acc Id:	XP_063122819 ⟸ XM_063266749
- Peptide Label:	isoform X2
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122865 ⟸ XM_063266795
- Peptide Label:	isoform X44
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122825 ⟸ XM_063266755
- Peptide Label:	isoform X7
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122855 ⟸ XM_063266785
- Peptide Label:	isoform X35
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122826 ⟸ XM_063266756
- Peptide Label:	isoform X8
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122838 ⟸ XM_063266768
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122835 ⟸ XM_063266765
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122820 ⟸ XM_063266750
- Peptide Label:	isoform X3
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122833 ⟸ XM_063266763
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122841 ⟸ XM_063266771
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122837 ⟸ XM_063266767
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122854 ⟸ XM_063266784
- Peptide Label:	isoform X34

RefSeq Acc Id:	XP_063122824 ⟸ XM_063266754
- Peptide Label:	isoform X6
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122832 ⟸ XM_063266762
- Peptide Label:	isoform X14
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122836 ⟸ XM_063266766
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122868 ⟸ XM_063266798
- Peptide Label:	isoform X47

RefSeq Acc Id:	XP_063122844 ⟸ XM_063266774
- Peptide Label:	isoform X25
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122828 ⟸ XM_063266758
- Peptide Label:	isoform X10
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122840 ⟸ XM_063266770
- Peptide Label:	isoform X21
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122843 ⟸ XM_063266773
- Peptide Label:	isoform X24
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122857 ⟸ XM_063266787
- Peptide Label:	isoform X36
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122848 ⟸ XM_063266778
- Peptide Label:	isoform X28
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122821 ⟸ XM_063266751
- Peptide Label:	isoform X4
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122831 ⟸ XM_063266761
- Peptide Label:	isoform X13
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122822 ⟸ XM_063266752
- Peptide Label:	isoform X5
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122867 ⟸ XM_063266797
- Peptide Label:	isoform X46

RefSeq Acc Id:	XP_063122827 ⟸ XM_063266757
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZLD3 (UniProtKB/TrEMBL), F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122839 ⟸ XM_063266769
- Peptide Label:	isoform X20
- UniProtKB:	A0A8I5ZQU4 (UniProtKB/TrEMBL), F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122846 ⟸ XM_063266776
- Peptide Label:	isoform X26
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122830 ⟸ XM_063266760
- Peptide Label:	isoform X12
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122849 ⟸ XM_063266779
- Peptide Label:	isoform X29
- UniProtKB:	A0A8I5ZKW2 (UniProtKB/TrEMBL), A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122858 ⟸ XM_063266788
- Peptide Label:	isoform X37
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122861 ⟸ XM_063266791
- Peptide Label:	isoform X40

RefSeq Acc Id:	XP_063122850 ⟸ XM_063266780
- Peptide Label:	isoform X30
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122862 ⟸ XM_063266792
- Peptide Label:	isoform X41

RefSeq Acc Id:	XP_063122860 ⟸ XM_063266790
- Peptide Label:	isoform X39
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122852 ⟸ XM_063266782
- Peptide Label:	isoform X32
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122864 ⟸ XM_063266794
- Peptide Label:	isoform X43
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122859 ⟸ XM_063266789
- Peptide Label:	isoform X38
- UniProtKB:	F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122851 ⟸ XM_063266781
- Peptide Label:	isoform X31
- UniProtKB:	A0A8I5ZVR4 (UniProtKB/TrEMBL), F1LYA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122866 ⟸ XM_063266796
- Peptide Label:	isoform X45
- UniProtKB:	A0A8I6AC48 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106890 ⟸ ENSRNOT00000123655

Ensembl Acc Id:

ENSRNOP00000112364 ⟸ ENSRNOT00000149612

Ensembl Acc Id:

ENSRNOP00000112288 ⟸ ENSRNOT00000139680

Ensembl Acc Id:

ENSRNOP00000099822 ⟸ ENSRNOT00000162455

Protein Domains

SH3 t-SNARE coiled-coil homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LYA6-F1-model_v2	AlphaFold	F1LYA6	1-534	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628771	AgrOrtholog
BioCyc Gene	G2FUF-27380	BioCyc
Ensembl Genes	ENSRNOG00000017707	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050179	ENTREZGENE
	ENSRNOT00000050179.7	UniProtKB/TrEMBL
	ENSRNOT00000096759	ENTREZGENE
	ENSRNOT00000096759.2	UniProtKB/TrEMBL
	ENSRNOT00000111854	ENTREZGENE
	ENSRNOT00000111854.2	UniProtKB/TrEMBL
	ENSRNOT00000113763	ENTREZGENE
	ENSRNOT00000113763.2	UniProtKB/TrEMBL
	ENSRNOT00000117396	ENTREZGENE
	ENSRNOT00000117396.2	UniProtKB/TrEMBL
	ENSRNOT00000119284.2	UniProtKB/TrEMBL
	ENSRNOT00000123655.1	UniProtKB/TrEMBL
	ENSRNOT00000139680.1	UniProtKB/TrEMBL
	ENSRNOT00000149612	ENTREZGENE
	ENSRNOT00000149612.1	UniProtKB/TrEMBL
	ENSRNOT00000162455	ENTREZGENE
	ENSRNOT00000162455.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.1620	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7453520	IMAGE-MGC_LOAD
InterPro	ABI	UniProtKB/TrEMBL
	Abi2_SH3	UniProtKB/TrEMBL
	ABI3_SH3	UniProtKB/TrEMBL
	Abl-interactor_HHR_dom	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/TrEMBL
MGC_CLONE	MGC:114249	IMAGE-MGC_LOAD
NCBI Gene	286928	ENTREZGENE
PANTHER	PTHR10460	UniProtKB/TrEMBL
	PTHR10460:SF26	UniProtKB/TrEMBL
Pfam	Abi_HHR	UniProtKB/TrEMBL
	SH3_1	UniProtKB/TrEMBL
PhenoGen	Abi2	PhenoGen
PRINTS	PRICHEXTENSN	UniProtKB/TrEMBL
	SH3DOMAIN	UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/TrEMBL
	T_SNARE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017707	RatGTEx
SMART	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SH3	UniProtKB/TrEMBL
UniProt	A0A8I5ZKW2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZLD3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQU4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZVR4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AC48	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L5F0_RAT	UniProtKB/TrEMBL
	A0ABK0LQI8_RAT	UniProtKB/TrEMBL
	A0ABK0M086_RAT	UniProtKB/TrEMBL
	A0ABK0M9G4_RAT	UniProtKB/TrEMBL
	A6IPC6	ENTREZGENE, UniProtKB/TrEMBL
	A6IPC7	ENTREZGENE, UniProtKB/TrEMBL
	A6IPC8	ENTREZGENE, UniProtKB/TrEMBL
	F1LYA6	ENTREZGENE, UniProtKB/TrEMBL
	O35823_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Abi2	abl-interactor 2	LOC100365983	rCG22366-like	Data merged from RGD:2318006	1643240	APPROVED
2010-05-05	LOC100365983	rCG22366-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-01-09	Abi2	abl-interactor 2	LOC301448	hypothetical LOC301448	Data merged from RGD:1584993	1643240	APPROVED
2006-11-19	LOC301448	hypothetical LOC301448			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	Abi2	abl-interactor 2			Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Abi2	abl-interactor 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	enriched in neuronal cells, cerebral tissue	631967
gene_homology	shows 83% amino acid sequence similarity with human Abi2	631967
gene_protein	68 kDa	631967
gene_regulation	induced by thyroxine	631967

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message