Zfp335 (zinc finger protein 335) - Rat Genome Database

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Gene: Zfp335 (zinc finger protein 335) Rattus norvegicus
Analyze
Symbol: Zfp335
Name: zinc finger protein 335
RGD ID: 628751
Description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; histone methyltransferase binding activity; and transcription coactivator activity. Predicted to be involved in nervous system development; positive regulation of cell population proliferation; and regulation of gene expression. Predicted to act upstream of or within several processes, including brain development; in utero embryonic development; and regulation of neurogenesis. Predicted to be part of histone methyltransferase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 10. Orthologous to human ZNF335 (zinc finger protein 335); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102554906; Nif; Nif-1; Nif1; NRC-interacting factor 1; uncharacterized LOC102554906; zinc-finger/leucine-zipper co-transducer NIF-1; Znf335
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,046,789 - 174,073,076 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3174,046,243 - 174,067,534 (-)EnsemblGRCr8
mRatBN7.23153,618,587 - 153,648,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,627,467 - 153,647,054 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3157,435,890 - 157,456,607 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,934,864 - 165,955,581 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,678,637 - 163,699,354 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,357,201 - 161,378,073 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)Ensemblrn6Rnor6.0
Rnor_5.03167,541,821 - 167,562,537 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43155,927,554 - 155,946,834 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3152,233,035 - 152,253,883 (-)NCBICelera
RGSC_v3.13155,833,581 - 155,843,252 (-)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
histone methyltransferase complex  (IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Components of the CCR4-NOT complex function as nuclear hormone receptor coactivators via association with the NRC-interacting Factor NIF-1. Garapaty S, etal., J Biol Chem. 2008 Mar 14;283(11):6806-16. doi: 10.1074/jbc.M706986200. Epub 2008 Jan 7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. NRC-interacting factor 1 is a novel cotransducer that interacts with and regulates the activity of the nuclear hormone receptor coactivator NRC. Mahajan MA, etal., Mol Cell Biol 2002 Oct;22(19):6883-94.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23178126   PMID:25573434  


Genomics

Comparative Map Data
Zfp335
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,046,789 - 174,073,076 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3174,046,243 - 174,067,534 (-)EnsemblGRCr8
mRatBN7.23153,618,587 - 153,648,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,627,467 - 153,647,054 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3157,435,890 - 157,456,607 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,934,864 - 165,955,581 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,678,637 - 163,699,354 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,357,201 - 161,378,073 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)Ensemblrn6Rnor6.0
Rnor_5.03167,541,821 - 167,562,537 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43155,927,554 - 155,946,834 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3152,233,035 - 152,253,883 (-)NCBICelera
RGSC_v3.13155,833,581 - 155,843,252 (-)NCBI
Cytogenetic Map3q42NCBI
ZNF335
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,948,660 - 45,972,203 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,948,653 - 45,972,206 (-)Ensemblhg38GRCh38
GRCh372044,577,299 - 44,600,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,010,699 - 44,034,240 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342044,010,699 - 44,034,240NCBI
Celera2041,288,749 - 41,312,289 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,318,761 - 41,342,313 (-)NCBIHuRef
CHM1_12044,479,949 - 44,503,488 (-)NCBICHM1_1
T2T-CHM13v2.02047,684,713 - 47,708,265 (-)NCBIT2T-CHM13v2.0
Zfp335
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,733,802 - 164,756,034 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,733,802 - 164,753,677 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382164,891,882 - 164,912,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,891,882 - 164,911,757 (-)Ensemblmm10GRCm38
MGSCv372164,717,392 - 164,737,250 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362164,583,082 - 164,602,803 (-)NCBIMGSCv36mm8
Celera2170,829,139 - 170,848,989 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Znf335
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,335,908 - 11,354,300 (+)Ensembl
ChiLan1.0NW_00495544511,334,742 - 11,354,584 (+)NCBIChiLan1.0ChiLan1.0
ZNF335
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,690,059 - 51,715,263 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,683,168 - 51,708,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,287,518 - 42,312,169 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,374,591 - 43,398,047 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,374,591 - 43,397,724 (-)EnsemblpanPan2panpan1.1
ZNF335
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,226,636 - 33,246,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,226,688 - 33,245,901 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2432,742,053 - 32,773,553 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02433,925,508 - 33,957,030 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,932,926 - 33,956,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,183,793 - 33,215,282 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,299,106 - 33,330,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,838,088 - 33,869,585 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf335
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,617,975 - 191,636,823 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,072,554 - 7,090,183 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,070,030 - 7,090,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF335
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,132,404 - 48,153,181 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11748,132,531 - 48,153,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,772,532 - 53,792,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF335
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,912,892 - 17,937,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,914,387 - 17,937,313 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605066,548,789 - 66,573,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf335
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,625,150 - 8,647,441 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247908,624,316 - 8,646,712 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf335
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15153,047,499 - 153,067,755 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:88
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000023521, ENSRNOT00000066944
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3166376089177728348Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat

Markers in Region
BM385093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,628,702 - 153,628,855 (+)MAPPERmRatBN7.2
Rnor_6.03161,358,439 - 161,358,591NCBIRnor6.0
Rnor_5.03167,543,059 - 167,543,211UniSTSRnor5.0
RGSC_v3.43155,928,783 - 155,928,935UniSTSRGSC3.4
Celera3152,234,273 - 152,234,425UniSTS
RH 3.4 Map31426.8UniSTS
Cytogenetic Map3q42UniSTS
RH139455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,629,917 - 153,630,051 (+)MAPPERmRatBN7.2
Rnor_6.03161,359,654 - 161,359,787NCBIRnor6.0
Rnor_5.03167,544,274 - 167,544,407UniSTSRnor5.0
RGSC_v3.43155,929,998 - 155,930,131UniSTSRGSC3.4
Celera3152,235,488 - 152,235,621UniSTS
RH 3.4 Map31424.1UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF309071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY079168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023521   ⟹   ENSRNOP00000023523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,046,790 - 174,067,534 (-)Ensembl
mRatBN7.2 Ensembl3153,627,546 - 153,647,054 (-)Ensembl
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109517   ⟹   ENSRNOP00000077500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3153,627,467 - 153,646,481 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110042   ⟹   ENSRNOP00000097203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,046,243 - 174,067,534 (-)Ensembl
mRatBN7.2 Ensembl3153,627,467 - 153,646,481 (-)Ensembl
RefSeq Acc Id: NM_001100486   ⟹   NP_001093956
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,790 - 174,067,534 (-)NCBI
mRatBN7.23153,627,466 - 153,648,213 (-)NCBI
RefSeq Acc Id: XM_039104392   ⟹   XP_038960320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,073,076 (-)NCBI
mRatBN7.23153,627,020 - 153,648,213 (-)NCBI
RefSeq Acc Id: XM_039104393   ⟹   XP_038960321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,057,344 (-)NCBI
mRatBN7.23153,627,020 - 153,638,021 (-)NCBI
RefSeq Acc Id: XM_063283171   ⟹   XP_063139241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,073,076 (-)NCBI
RefSeq Acc Id: XM_063283172   ⟹   XP_063139242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,066,242 (-)NCBI
Ensembl Acc Id: ENSRNOP00000023523   ⟸   ENSRNOT00000023521
RefSeq Acc Id: XP_038960320   ⟸   XM_039104392
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y9K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960321   ⟸   XM_039104393
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001093956   ⟸   NM_001100486
- UniProtKB: G3V893 (UniProtKB/Swiss-Prot),   Q8CIV9 (UniProtKB/Swiss-Prot),   A0A8I5Y9K3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097203   ⟸   ENSRNOT00000110042
Ensembl Acc Id: ENSRNOP00000077500   ⟸   ENSRNOT00000109517
RefSeq Acc Id: XP_063139241   ⟸   XM_063283171
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y9K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139242   ⟸   XM_063283172
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y9K3 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V893-F1-model_v2 AlphaFold G3V893 1-1336 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628751 AgrOrtholog
BioCyc Gene G2FUF-46818 BioCyc
Ensembl Genes ENSRNOG00000017290 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023521 ENTREZGENE
  ENSRNOT00000110042.1 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro Zinc_finger/UBP_domain UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
NCBI Gene 259270 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN 335 UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
  zf-C2H2_6 UniProtKB/Swiss-Prot
  zf-H2C2_5 UniProtKB/Swiss-Prot
PhenoGen Zfp335 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017290 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt A0A140TAC9_RAT UniProtKB/TrEMBL
  A0A8I5Y9K3 ENTREZGENE
  G3V893 ENTREZGENE
  Q8CIV9 ENTREZGENE
  ZN335_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q8CIV9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zfp335  zinc finger protein 335  LOC102554906  uncharacterized LOC102554906  Data merged from RGD:7694697 737654 PROVISIONAL
2013-12-18 LOC102554906  uncharacterized LOC102554906      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Zfp335  zinc finger protein 335  Nif1  zinc-finger/leucine-zipper co-transducer NIF-1  Symbol and Name updated 1299863 APPROVED
2003-02-27 Nif1  zinc-finger/leucine-zipper co-transducer NIF-1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains six Cys-2/His-2 zinc fingers, an N-terminal stretch of acidic amino acids, and a C-terminal leucine zipper-like motif 633400