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Gene: Rims4 (regulating synaptic membrane exocytosis 4) Rattus norvegicus

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Symbol:

Rims4

Name:

regulating synaptic membrane exocytosis 4

RGD ID:

628695

Description:

Predicted to enable transmembrane transporter binding activity. Involved in regulation of synapse organization. Acts upstream of or within regulation of synaptic vesicle exocytosis. Is active in glutamatergic synapse. Orthologous to human RIMS4 (regulating synaptic membrane exocytosis 4); INTERACTS WITH ammonium chloride; bisphenol A; glyphosate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

rab3-interacting molecule 4; regulating synaptic membrane exocytosis protein 4; RIM 4; RIM4 gamma; Rim4gamma; synaptic regulatory protein RIM4gamma

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RIMS4 (regulating synaptic membrane exocytosis 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Rims4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rims4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RIMS4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RIMS4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rims4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RIMS4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RIMS4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rims4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rims4 (regulating synaptic membrane exocytosis 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RAX (retina and anterior neural fold homeobox)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RIMS4 (regulating synaptic membrane exocytosis 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RIMS4 (regulating synaptic membrane exocytosis 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rims4 (regulating synaptic membrane exocytosis 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rims4 (regulating synaptic membrane exocytosis 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rims4 (regulating synaptic membrane exocytosis 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rim	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	Rim	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	unc-10	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	unc-10	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	rims2	Alliance	DIOPT (Hieranoid\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	rims4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,940,404 - 173,004,490 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	172,940,404 - 173,023,718 (-)	Ensembl				GRCr8
mRatBN7.2	3	152,520,982 - 152,585,070 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	152,524,095 - 152,584,780 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	156,332,581 - 156,392,228 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,831,527 - 164,891,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	162,575,762 - 162,635,427 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	160,237,659 - 160,301,792 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	160,241,619 - 160,301,552 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	166,431,305 - 166,490,895 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	154,782,944 - 154,843,492 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	151,175,573 - 151,235,122 (-)	NCBI		Celera
RGSC_v3.1	3	154,688,979 - 154,749,528 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethylparaben (ISO)

folic acid (ISO)

glyphosate (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

PhIP (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocytosis (IEA)

neurotransmitter secretion (NAS)

neurotransmitter transport (IEA)

regulation of membrane potential (ISO,ISS)

regulation of synapse organization (IDA,IMP)

regulation of synaptic vesicle exocytosis (IMP)

Cellular Component

glutamatergic synapse (IDA,IEP,IMP)

membrane (IEA)

presynapse (IEA)

synapse (IDA,IEA,IEP)

synaptic membrane (ISO,ISS)

Molecular Function

protein binding (ISO)

small GTPase binding (IEA)

transmembrane transporter binding (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	RIM3¿ and RIM4¿ are key regulators of neuronal arborization.	Alvarez-Baron E, etal., J Neurosci. 2013 Jan 9;33(2):824-39. doi: 10.1523/JNEUROSCI.2229-12.2013.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Rab3-interacting molecule gamma isoforms lacking the Rab3-binding domain induce long lasting currents but block neurotransmitter vesicle anchoring in voltage-dependent P/Q-type Ca2+ channels.	Uriu Y, etal., J Biol Chem. 2010 Jul 9;285(28):21750-67. doi: 10.1074/jbc.M110.101311. Epub 2010 May 7.
7.	Genomic definition of RIM proteins: evolutionary amplification of a family of synaptic regulatory proteins( small star, filled ).	Wang Y and Sudhof TC, Genomics 2003 Feb;81(2):126-37.

Genomics

Comparative Map Data

Rims4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,940,404 - 173,004,490 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	172,940,404 - 173,023,718 (-)	Ensembl				GRCr8
mRatBN7.2	3	152,520,982 - 152,585,070 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	152,524,095 - 152,584,780 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	156,332,581 - 156,392,228 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,831,527 - 164,891,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	162,575,762 - 162,635,427 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	160,237,659 - 160,301,792 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	160,241,619 - 160,301,552 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	166,431,305 - 166,490,895 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	154,782,944 - 154,843,492 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	151,175,573 - 151,235,122 (-)	NCBI		Celera
RGSC_v3.1	3	154,688,979 - 154,749,528 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

RIMS4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	44,751,808 - 44,810,546 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	44,751,808 - 44,810,546 (-)	Ensembl			hg38	GRCh38
GRCh37	20	43,380,449 - 43,439,187 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	42,813,863 - 42,872,326 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	42,813,862 - 42,872,326	NCBI
Celera	20	40,089,112 - 40,147,575 (-)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	40,121,981 - 40,180,831 (-)	NCBI		HuRef
CHM1_1	20	43,283,483 - 43,342,017 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	46,487,544 - 46,546,418 (-)	NCBI		T2T-CHM13v2.0

Rims4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	163,701,676 - 163,760,893 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	163,701,671 - 163,760,603 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	163,859,756 - 163,918,973 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	163,859,751 - 163,918,683 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	163,689,617 - 163,744,419 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	163,555,322 - 163,610,124 (-)	NCBI		MGSCv36	mm8
Celera	2	169,800,550 - 169,854,461 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	84.52	NCBI

Rims4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	12,542,818 - 12,604,355 (+)	Ensembl
ChiLan1.0	NW_004955445	12,542,824 - 12,604,355 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIMS4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	50,484,715 - 50,543,589 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	50,477,818 - 50,536,692 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	41,082,200 - 41,141,119 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	42,176,426 - 42,266,587 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	42,180,764 - 42,234,847 (-)	Ensembl			panPan2	panpan1.1

RIMS4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	32,199,068 - 32,256,474 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	32,203,410 - 32,256,480 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	31,839,817 - 31,928,051 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	32,905,312 - 32,993,662 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	32,907,289 - 32,968,231 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	32,166,872 - 32,254,873 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	32,281,598 - 32,369,791 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	32,823,164 - 32,911,484 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rims4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	192,469,376 - 192,523,550 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	7,923,013 - 7,973,299 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	7,923,019 - 7,977,193 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIMS4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	47,167,305 - 47,235,386 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	47,167,302 - 47,235,237 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	52,620,971 - 52,627,488 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIMS4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	19,001,516 - 19,058,797 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	19,001,617 - 19,058,863 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	67,669,745 - 67,727,184 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rims4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	9,658,850 - 9,721,084 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	9,654,266 - 9,720,522 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rims4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	154,057,495 - 154,117,237 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	157
Count of miRNA genes:	123
Interacting mature miRNAs:	129
Transcripts:	ENSRNOT00000014498
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

D3Uwm7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	172,967,367 - 172,967,583 (+)	Marker Load Pipeline
mRatBN7.2	3	152,547,951 - 152,548,167 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	160,264,623 - 160,264,838	NCBI	Rnor6.0
Rnor_5.0	3	166,454,110 - 166,454,325	UniSTS	Rnor5.0
RGSC_v3.4	3	154,806,774 - 154,806,989	UniSTS	RGSC3.4
RGSC_v3.4	3	154,806,773 - 154,806,989	RGD	RGSC3.4
Celera	3	151,198,387 - 151,198,602	UniSTS
RGSC_v3.1	3	154,712,809 - 154,713,025	RGD
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	9	48	150	44	36	19	15	19	6	202	93	7	126	72	90	17	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_170666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF548739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014498 ⟹ ENSRNOP00000014499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	152,524,095 - 152,584,780 (-)	Ensembl
Rnor_6.0 Ensembl	3	160,241,619 - 160,301,552 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130760 ⟹ ENSRNOP00000112613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	172,940,404 - 173,023,718 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156486 ⟹ ENSRNOP00000107446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	172,940,404 - 173,004,483 (-)	Ensembl

RefSeq Acc Id:

NM_170666 ⟹ NP_733766

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	172,940,404 - 173,004,483 (-)	NCBI
mRatBN7.2	3	152,520,982 - 152,585,070 (-)	NCBI
Rnor_6.0	3	160,241,816 - 160,301,578 (-)	NCBI
Rnor_5.0	3	166,431,305 - 166,490,895 (-)	NCBI
RGSC_v3.4	3	154,782,944 - 154,843,492 (-)	RGD
Celera	3	151,175,573 - 151,235,122 (-)	RGD

Sequence:

show sequence

ATGGAGCGCTCGCAGAGCCGCCTCAGCCTGTCCGCCTCCTTCGAGGCGCTCGCCATCTACTTCC
CGTGCATGAACTCCTTCGATGATGAGGACGCAGCAGACAGCCGGAGGCTGAAGGGTGCCATCCA
GAGAAGCACAGAGACAGGGCTGGCCGTGGAGATGCCCAGCCGGACGTTACGCCAAGCCAGCCAT
GAGTCCATCGAGGACAGCATGAATAGCTATGGCTCAGAGGGCAACCTGAACTATGGAGGAGTTT
GTCTAGCTTCGGATGCCCAGTTCAGTGACTTCCTGGGGAGCATGGGGCCAGCACAGTTTGTGGG
CCGCCAGACCCTGGCTACCACACCCATGGGGGGTGTGGAGATCGGTTTACAGGAGCGGAACGGT
CAGCTGGAGGTGGACATCATCCAGGCACGCGGGCTGACTGCCAAGCCAGGCTCGAAGACACTGC
CAGCTGCCTATATCAAGGCCTATCTGCTGGAAAATGGTGTCTGCATTGCCAAGAAGAAGACCAA
AGTGGCCCGCAAGTCACTGGACCCATTGTACAACCAGGTGCTTCTGTTTCCTGAGAGTCCCCAG
GGCAAAGTCCTGCAGGTAATTGTGTGGGGAAACTACGGACGAATGGAGCGGAAGCAGTTCATGG
GCGTGGCTCGAGTGCTGCTGGAGGAACTGGACTTGACCACCCTGGCCGTGGGTTGGTACAAGCT
CTTCCCCACCTCCTCCATGGTGGACCCAGCCACAGGTCCCCTGCTTCGGCAGGCATCCCAGCTG
TCCCTCGAGAGCACCGTGGGGCCCTGTGGCGAGCGATCTTAA

hide sequence

RefSeq Acc Id:

XM_008762471 ⟹ XP_008760693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	172,940,404 - 173,004,490 (-)	NCBI
mRatBN7.2	3	152,520,982 - 152,585,068 (-)	NCBI
Rnor_6.0	3	160,237,659 - 160,301,792 (-)	NCBI

Sequence:

show sequence

CCGCCGCCACCGCCGCGAGCACCGCGCGTCTCCCGCTCCAAGCGCCGCCAGTGTCCGGCCCTCT
GCGCCCAGGCGCCAGCCCCGCCGCCCGCCCGCGGAGCCCCGGGCCGCCGCCACCACGCCGCGCG
CCGTACTCCGCGTCAAGAATGGGGCGGCCAAGCTGCCCAAGCCGCCCGCCGCCGCGGCGGCCGA
GGCTCCTGGAGCGGGCGCGGGCATGGAGCGCTCGCAGAGCCGCCTCAGCCTGTCCGCCTCCTTC
GAGGCGCTCGCCATCTACTTCCCGTGCATGAACTCCTTCGATGATGAGGACGCAGACAGCCGGA
GGCTGAAGGGTGCCATCCAGAGAAGCACAGAGACAGGGCTGGCCGTGGAGATGCCCAGCCGGAC
GTTACGCCAAGCCAGCCATGAGTCCATCGAGGACAGCATGAATAGCTATGGCTCAGAGGGCAAC
CTGAACTATGGAGGAGTTTGTCTAGCTTCGGATGCCCAGTTCAGTGACTTCCTGGGGAGCATGG
GGCCAGCACAGTTTGTGGGCCGCCAGACCCTGGCTACCACACCCATGGGGGATGTGGAGATCGG
TTTACAGGAGCGGAACGGTCAGCTGGAGGTGGACATCATCCAGGCACGCGGGCTGACTGCCAAG
CCAGGCTCGAAGACACTGCCAGCTGCCTATATCAAGGCCTATCTGCTGGAAAATGGTGTCTGCA
TTGCCAAGAAGAAGACCAAAGTGGCCCGCAAGTCACTGGACCCGTTGTACAACCAGGTGCTTCT
GTTTCCTGAGAGTCCCCAGGGCAAAGTCCTGCAGGTAATTGTGTGGGGAAACTACGGACGAATG
GAGCGGAAGCAGTTCATGGGCGTGGCTCGAGTGCTGCTGGAGGAACTGGACTTGACCACCCTGG
CCGTGGGTTGGTACAAGCTCTTCCCCACCTCCTCCATGGTGGACCCAGCCACAGGTCCCCTGCT
TCGGCAGGCATCCCAGCTGTCCCTCGAGAGCACCGTGGGGCCCTGTGGCGAGCGATCTTAATGC
CAGGGATGGGGAGGGGCTCCCCGAGATGGCCTGGAGACCACCCAGCCCTGACCTGGGACCCCAG
GCCCAGGGGCACATTGGACATTGGAGGATGGGGTTCTTCCCCACAGTGGGGAAGCAGAATGGGG
AGACCTGCCCCCCATGGGCCCCTCCTCACTCCTTCACCTCCTACCCCTGAGACCTTCCCTTTCC
CAGTGGGTTGGCTACACTTTTGACTTGGCCGGTTTTGACCTGGTGGATGCGGCTACAATCGGAG
AAAGACTGAAGTGGCAGAGCAAACCACTCTTCCGCCCTACCCTACCCTACCCCACCCCACCCAT
TCCCCCTTTGCCTCCTTGGAAGCTCGCTGCCCAGAGCCAAGTCCAGAACCAAGCCGGCCATCTC
CATGGTGCCAATTACCAGCAAGTGTCTTTCCTGCGGCACCGGGTTCCGGCAGCTACTCCTGCCC
CAGAGCTGACGGGGCAGTTTGCAAGGATCCGGAGCCAGCTCCCAAAGGGGGTGCCCAGAGCTCC
CCACTTGAAGGGGAGCGTGGGTCTCCCTCTGCCTGCCCGTGGAAGGAGCTTTGCCGCAGCCTGT
CTGAGTCCATCCATCCATCCCCTCCTGCCTGTCCCTCTGCTGTAAGCTCTAGGAATTGGGGGCC
AGCAGAGACCAAAGGAAAGGAGGAGGTACCCAAGGCTTGGCAGGATCCCCAAGGGTCCTTGCTC
CATGGGATTGCAACAAGCTGGTCTGGAGCTCTTGGTGGACTGGAAAGGACATTGTCATCTGTGA
TATGGTGGAGGGACTAAGGGGAACCTGAGTTTCCAGAACCTTGTACGCAGGGAACAGCTCTCCT
GTGGGAGAGTGGTAGGAGCGGAGCGTTGAAGAAGCTGGAGTTAGGTATATGTGGCACCAAGGTG
AGGGTTTTCCAAACAGGAGATCCCTTCTTGTTGGATGAGATCAAAGGTCATCTTGTTATCCCTC
TGCCTCTGGGCTAGGGTCTTGGAGAGGCATTAGAGCCACTCACATTTTAGTCTGTTTAAATAAA
CCATCCCGTAGGAAGGGCAAAAGCCACTGCCCAGCCTCATCACCTTGGCTCAAGGAGAGATGGC
GTTCCAGGAGGAGGGATATAGAGCTAAAAGTTTGAGAATTGAGGCTCCAATGAGGCCTGAGTAG
CTGCCTTCCTGTGGCCCTCCCTGGGGCCTGCAGGAGCCCTTTTGCATGCGAGGGAGGACACAGT
CTGGCCCCTATAGAAGCACATTTCTATCACCCACTCCTGGGAGGCGCCCAGCAGCCAGTCCTCC
TCAGGTAGTCCCTGCTGTGTAGGGTGTAGTCCAGGTTAGCTGGGTAATTAGTGTTCACACCTGA
GGCCTGTTAGCTCAGATGTAGTCTTTTTTTCAAGCCCCAGGCTGTGAGTAGAGGGGAGGCCCCC
CAGTACATTCCAGAAGATTATAGACTCTCTCTCTAGCCTGGGCTGGATGGGCTGCCTGGCTCCC
CGGAGGCCAGCCCTTCCACCTCCTCCCTGCCTTCCTCTCTCCTCCCTTCTAAGGTTGTAGCCCT
AACTGTCCATCACTCTCAGCACTCTGGTGTAATAGACCCTCGGCCTTGATTTTCTTTACCACGC
ACTCCCGAGGGTTGCTGGGCCTTGCAGAGAGAGGCCTGGACTACATTTAGACAGAATCATTTCC
CGCCAAGGACGCCAGGACTCTGTTGAATCCCTCCTTGTTCCTGGTTCATTCACCAAGGGATTCC
TTCAACTTGGAAATTCTCATTCCCAGCCTGGCTAAGCCTGGGGTGCCCTTTAGGGTTCTGTCCA
GTTCTGGCCCCTCCCCATGCAGCTGTTGACGCTACACGGGGAGGGGCTGTGAACAGGCCCCTCT
TCTCCAATTGGTCTTCAGCGTGTCTTTGGGAGTGTCCTTGGTCAGGCCTCCTGGACAAGGGAGC
AGGGCTCTCGATGGGCTGTCTTCGAGGCCCACAGTTAGCCATCACCCCATTTTTCCAGTGTGAT
ATCCTTGCTGTTAGGTTATTACTCGCCGTTTGGGAGTATTTTGAGCCAGGAGAGCACCTCCCTC
TCCAGCTGTCATCGCTGTGGTCGTTCAGGGTCGGATGGAGCCTGGCTGTCACAGCCAGCAGGGA
GAGGCTCAGCTCCAATGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGCGAGCGCGAGAGCACGAGCGCACGAGGGAGCACTGACTCCAAAGCAATAACAAC
ACCCTGAGGTGGTCAGCAAGGCCCCTCAGAGACTTTCTTGTTTGTTCTGTGAAATCACACTCAC
CTCCTGGAGGGGTAGAGTGGGGGGGCTGGAGCCCCATTTCTTTGTACCATTGTAAGCGTGTGCC
CGAGGGGCTGTGACCACTGGGTGTGGGACCCATTTCTGTCCTCACCAAAGGACTGGACGGGGCT
TGGGGACGGGGAGTGATTTTTTTCATCCTTAGCCTCGGGGACCAACAAGCCCAGCCTGTTCCCA
CTGCTGTCTGACCCTCTGTCAACTCAAACTCTACCATCTGGAGGGGAGTCGAGAGGGTGGAGTG
GGGGGAGCCTTTCTGGTGCTGTGTCTCTAAGGGTGTTTCTTTCTTCCCTCTGGACAAAGGTCAT
GTGTAGGATTGTCGTGTAAAGAGCCATCTCCATTTTCCTTACCCAGAATGCCTCTGCATTCTGA
AGGGACAGGCCTGTGGCTCTCTAGTCCATTTGCATTAAAAAAAAAAAACAAAAGGATACCAAGG
CCCTGCCTGAGGAGAGCCATCGTGGGGTCACTGGAAGGTCCAGTGGCATTTCCACCCAGGTCTC
CCCTTCATGTCTCATGCTGAGCTGGTGCCAGGGAAGGCTGAAGGAGGACAGCATTTCTCATCCT
TTCTATTGCTTCTCTTTGGAGCCTCCTAGTGGCTCCCAGCTGTGGCAGGACAAACGGTAGCCCA
TCTGAGAGGTTAGGAAACTCAGGCCATAGCAAGCAGGAAGGGCCCTCAGCAATATGCACTGGGG
GGACAAAGCTGGGAGACCACCACTCAGGGGTGCCACCATCATCATTTCTGTCCTTTAGGCACAG
GTGGCATTGTCCTGCTTGGCTCTCTTTCCTGGGCTAGTGCCTTTTCTGGGCTTGAGTTGGGAGA
AGAGGGCGGCTGGTGGGAGGGGTACCGGGTTGGCCTGGATGTCCTGGGCTATCTCCCCAGGGAT
CATGAGCTGAAGGGTTTTATTCTGGGTCATTACCTCTTCAGGTCTAGCTGCGAGTGGGTGGGGT
GAGAAAAAAAAAAAAACAAGTTCCCTTCTGGGTTCATAGAGCGGGGGCTCAAGGAAGTCCTCTC
TAACCTTCAGAAGCACCTCATCCCATAACACCTCCCACGGCGCGTCCCCCGTGATTTCACTCTG
ACCCCCATCAGAGCCCCGAATAGCCAGGGAAGGGATGCTTGCAATTGTCAGCCTTGTTTTCAGG
AGGGAGCGAAGGTCCTGAAAGAGAAAGGTGCTTGCTCACGTTATGGCTTTGACAGAGCTAGCTC
GCTCTCCAGTGGTCCATAGCACAGGCATGCAAGCATGTAACAGAGGCAGTTAAGCAGTTCACCT
CCAGGTTCCTTCAGGCAGGAGCTTCTTGAGTACTTTGGGGTTCACGAACAGCACAGGGGCTCCC
ACATTCTCCCAAGGCAGAGCTGTTGCACCAGGCAAGGTCACCTGCATTTATTTATTGAGCAGCA
GCACTACACTAGGCCCAGAGCCTTAGACCCCTTTCCCGTCCCCTGCAATGGTTCTCTTGGCCTT
CCAAGAGGGCCTGTGTCTGCAGAACAGGACCTTGGTGGATAGAGAGTTTCTATAGGCTTACCTA
GCAAGCCCCAAGGGTTTTTTGTTTCATCAAGAGATCCTGTGTGGGCTGGGCCGGAGGCTGGAAG
TAGACGTAGGTGTTACTTCTGAGTCCTTTGTGCCGTCCTGTAAGGTGACAGGAAGGTGGGACCC
CAGAATCCTGGGGCTGGGAGCCTCCCTTCATCTACCCACCTTTCCCTGTTTCCTCTTGGGGGGC
AGGAACAGCCTGGTCCTCCAGGGAGGGAGGGATTTGGGGGCGTCTGAGTTGGAGCGGGTCACAT
GGCATTGTATTCATGACTATATAGCTCATGTTGGAAATTAAAGTTTTTGGCTTTTCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_733766	(Get FASTA)	NCBI Sequence Viewer
	XP_008760693	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAN59931	(Get FASTA)	NCBI Sequence Viewer
	EDL96557	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000107446
GenBank Protein	Q8CIX1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_733766 ⟸ NM_170666

- UniProtKB:

Q8CIX1 (UniProtKB/Swiss-Prot), F1M7Z9 (UniProtKB/TrEMBL), A6JX52 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERSQSRLSLSASFEALAIYFPCMNSFDDEDAADSRRLKGAIQRSTETGLAVEMPSRTLRQASH
ESIEDSMNSYGSEGNLNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGGVEIGLQERNG
QLEVDIIQARGLTAKPGSKTLPAAYIKAYLLENGVCIAKKKTKVARKSLDPLYNQVLLFPESPQ
GKVLQVIVWGNYGRMERKQFMGVARVLLEELDLTTLAVGWYKLFPTSSMVDPATGPLLRQASQL
SLESTVGPCGERS

hide sequence

RefSeq Acc Id:	XP_008760693 ⟸ XM_008762471
- Peptide Label:	isoform X1
- UniProtKB:	Q8CIX1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MERSQSRLSLSASFEALAIYFPCMNSFDDEDADSRRLKGAIQRSTETGLAVEMPSRTLRQASHE SIEDSMNSYGSEGNLNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQ LEVDIIQARGLTAKPGSKTLPAAYIKAYLLENGVCIAKKKTKVARKSLDPLYNQVLLFPESPQG KVLQVIVWGNYGRMERKQFMGVARVLLEELDLTTLAVGWYKLFPTSSMVDPATGPLLRQASQLS LESTVGPCGERS hide sequence

Ensembl Acc Id:

ENSRNOP00000014499 ⟸ ENSRNOT00000014498

Ensembl Acc Id:

ENSRNOP00000112613 ⟸ ENSRNOT00000130760

Ensembl Acc Id:

ENSRNOP00000107446 ⟸ ENSRNOT00000156486

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CIX1-F1-model_v2	AlphaFold	Q8CIX1	1-269	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628695	AgrOrtholog
BioCyc Gene	G2FUF-46889	BioCyc
Ensembl Genes	ENSRNOG00000010868	Ensembl
	ENSRNOG00000074704	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000156486	ENTREZGENE
Gene3D-CATH	2.60.40.150	UniProtKB/Swiss-Prot
InterPro	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	Rim-like	UniProtKB/Swiss-Prot
KEGG Report	rno:266976	UniProtKB/Swiss-Prot
NCBI Gene	266976	ENTREZGENE
PANTHER	PTHR12157	UniProtKB/Swiss-Prot
	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS 4	UniProtKB/Swiss-Prot
Pfam	PF00168	UniProtKB/Swiss-Prot
PhenoGen	Rims4	PhenoGen
PROSITE	PS50004	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010868	RatGTEx
	ENSRNOG00000074704	RatGTEx
SMART	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot
UniProt	A0ABK0LNM6_RAT	UniProtKB/TrEMBL
	A0ABK0LY74_RAT	UniProtKB/TrEMBL
	A6JX52	ENTREZGENE, UniProtKB/TrEMBL
	F1M7Z9	ENTREZGENE
	Q8CIX1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-04-22	Rims4	regulating synaptic membrane exocytosis 4	Rim4gamma	synaptic regulatory protein RIM4gamma	Symbol and Name updated to reflect Human and Mouse nomenclature	625702	APPROVED
2003-02-27	Rim4gamma	synaptic regulatory protein RIM4gamma			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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