Advanced Search (OLGA)

Gene: Rnf34 (ring finger protein 34) Rattus norvegicus

Analyze

Symbol:

Rnf34

Name:

ring finger protein 34

RGD ID:

628636

Description:

Enables ubiquitin protein ligase activity. Involved in regulation of postsynaptic neurotransmitter receptor internalization. Is active in GABA-ergic synapse; postsynaptic specialization; and presynapse. Orthologous to human RNF34 (ring finger protein 34); INTERACTS WITH 2,4-dinitrotoluene; ammonium chloride; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E3 ubiquitin-protein ligase RNF34; MGC93980; Momo; ring finger protein 34, E3 ubiquitin protein ligase; RING finger protein MOMO; RING-type E3 ubiquitin transferase RNF34

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF34 (ring finger protein 34)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rnf34 (ring finger protein 34)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RNF34 (ring finger protein 34)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf34b (ring finger protein 34b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf34b (ring finger protein 34b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	rnf34a (ring finger protein 34a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf34a (ring finger protein 34a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17019	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17019	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf34	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf34	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	39,364,461 - 39,385,391 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	39,355,578 - 39,385,340 (-)	Ensembl				GRCr8
mRatBN7.2	12	33,703,655 - 33,724,606 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	33,703,673 - 33,724,586 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	34,882,808 - 34,902,193 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	35,494,172 - 35,513,557 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	34,545,596 - 34,566,473 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,164,290 - 39,185,209 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,164,290 - 39,185,168 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	41,057,289 - 41,078,204 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	34,805,137 - 34,826,016 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	35,382,479 - 35,403,370 (-)	NCBI		Celera
RGSC_v3.1	12	34,668,524 - 34,689,404 (-)	NCBI
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colonic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP,ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dieldrin (EXP)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

irinotecan (ISO)

isoflurane (ISO)

L-methionine (ISO)

leflunomide (ISO)

nickel atom (ISO)

nickel dichloride (EXP)

paracetamol (EXP,ISO)

PhIP (ISO)

quercetin (ISO)

resveratrol (ISO)

sevoflurane (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

cellular response to cold (IEA,ISO)

negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (IBA,IEA,ISO,ISS)

negative regulation of signal transduction by p53 class mediator (IEA,ISO,ISS)

nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway (IEA,ISO,ISS)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA,IEA,ISO,ISS)

protein K48-linked ubiquitination (IEA,ISO,ISS)

protein ubiquitination (IEA,ISO,ISS)

regulation of oxygen metabolic process (IEA,ISO,ISS)

regulation of postsynaptic neurotransmitter receptor internalization (IDA,IMP)

ubiquitin-dependent protein catabolic process (IEA,ISO,ISS)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (IEA)

endomembrane system (IEA)

GABA-ergic synapse (IDA,IMP)

nuclear body (IEA,ISO)

nuclear speck (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO,ISS)

plasma membrane (IBA,IEA,ISO,ISS)

postsynaptic specialization (IDA)

presynapse (IDA)

Molecular Function

metal ion binding (IEA)

p53 binding (IEA,ISO)

phosphatidylinositol phosphate binding (IEA,ISO,ISS)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IBA,IDA,IEA,ISO,ISS)

ubiquitin protein ligase binding (IEA,ISO)

ubiquitin-protein transferase activity (IDA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	A palmitoylated RING finger ubiquitin ligase and its homologue in the brain membranes.	Araki K, etal., J Neurochem 2003 Aug;86(3):749-62.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Ring finger protein 34 (RNF34) interacts with and promotes gamma-aminobutyric acid type-A receptor degradation via ubiquitination of the gamma2 subunit.	Jin H, etal., J Biol Chem. 2014 Oct 17;289(42):29420-36. doi: 10.1074/jbc.M114.603068. Epub 2014 Sep 5.
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15069192	PMID:15489334	PMID:17121812	PMID:18382127	PMID:22064484	PMID:25012219	PMID:28902127

Genomics

Comparative Map Data

Rnf34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	39,364,461 - 39,385,391 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	39,355,578 - 39,385,340 (-)	Ensembl				GRCr8
mRatBN7.2	12	33,703,655 - 33,724,606 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	33,703,673 - 33,724,586 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	34,882,808 - 34,902,193 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	35,494,172 - 35,513,557 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	34,545,596 - 34,566,473 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,164,290 - 39,185,209 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,164,290 - 39,185,168 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	41,057,289 - 41,078,204 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	34,805,137 - 34,826,016 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	35,382,479 - 35,403,370 (-)	NCBI		Celera
RGSC_v3.1	12	34,668,524 - 34,689,404 (-)	NCBI
Cytogenetic Map	12	q16	NCBI

RNF34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	121,400,118 - 121,424,348 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	121,400,078 - 121,430,623 (+)	Ensembl			hg38	GRCh38
GRCh37	12	121,837,921 - 121,862,151 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	120,322,285 - 120,346,538 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	120,300,621 - 120,324,875	NCBI
Celera	12	121,475,573 - 121,499,826 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	118,847,675 - 118,871,945 (+)	NCBI		HuRef
CHM1_1	12	121,806,339 - 121,830,742 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	121,366,860 - 121,415,781 (+)	NCBI		T2T-CHM13v2.0

Rnf34
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	122,988,270 - 123,007,008 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	122,988,111 - 123,009,354 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	122,850,112 - 122,868,945 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	122,850,048 - 122,871,291 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	123,300,197 - 123,318,954 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	123,110,805 - 123,129,562 (+)	NCBI		MGSCv36	mm8
Celera	5	119,936,301 - 119,955,549 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	62.62	NCBI

Rnf34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	6,891,546 - 6,905,139 (-)	Ensembl
ChiLan1.0	NW_004955482	6,889,112 - 6,905,139 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNF34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	129,466,369 - 129,509,485 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	129,462,743 - 129,505,859 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	118,998,436 - 119,022,823 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	122,373,125 - 122,396,579 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	122,373,172 - 122,402,693 (+)	Ensembl			panPan2	panpan1.1

RNF34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	7,746,460 - 7,767,967 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	7,744,924 - 7,767,892 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	7,905,034 - 7,932,810 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	7,997,181 - 8,024,945 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	8,001,662 - 8,024,896 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	7,928,632 - 7,956,393 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	8,015,897 - 8,043,664 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	7,971,921 - 7,999,702 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rnf34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	156,560,433 - 156,577,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	2,901,512 - 2,919,018 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	2,901,386 - 2,918,976 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	31,206,674 - 31,229,484 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	31,202,030 - 31,229,529 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RNF34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	116,777,294 - 116,800,816 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	116,777,419 - 116,800,035 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	128,233,321 - 128,257,267 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	21,904,667 - 21,920,778 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	21,904,652 - 21,920,579 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rnf34
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	30,962,381 - 30,982,783 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rnf34
187 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	258
Count of miRNA genes:	184
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000001799
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

RH128319

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	33,703,873 - 33,704,064 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	39,164,491 - 39,164,681	NCBI	Rnor6.0
Rnor_5.0	12	41,057,490 - 41,057,680	UniSTS	Rnor5.0
RGSC_v3.4	12	34,805,338 - 34,805,528	UniSTS	RGSC3.4
Celera	12	35,382,680 - 35,382,870	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	91	59	6	355	191	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY157968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001799 ⟹ ENSRNOP00000001799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	39,364,461 - 39,385,340 (-)	Ensembl
mRatBN7.2 Ensembl	12	33,703,676 - 33,724,569 (-)	Ensembl
Rnor_6.0 Ensembl	12	39,164,290 - 39,185,168 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103449 ⟹ ENSRNOP00000080689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	39,364,461 - 39,384,406 (-)	Ensembl
mRatBN7.2 Ensembl	12	33,703,673 - 33,724,586 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141188 ⟹ ENSRNOP00000100687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	39,355,578 - 39,385,340 (-)	Ensembl

RefSeq Acc Id:

NM_001004075 ⟹ NP_001004075

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,364,461 - 39,385,340 (-)	NCBI
mRatBN7.2	12	33,703,673 - 33,724,554 (-)	NCBI
Rnor_6.0	12	39,164,290 - 39,185,168 (-)	NCBI
Rnor_5.0	12	41,057,289 - 41,078,204 (-)	NCBI
RGSC_v3.4	12	34,805,137 - 34,826,016 (-)	RGD
Celera	12	35,382,479 - 35,403,370 (-)	RGD

Sequence:

show sequence

TCGCCGCCTTAGAAGGAAGGAGGTCCGTTGTGTGAGCAGTCTGCTATGGTGCTGAGTTCCCGGG
TAGAGCCGACCGAGCCGAGGCGGTCGCGGCCATGAAGGCGGGTGCTACCTCTATGTGGGCTTCA
TGCTGTGGACTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGAGGCCAGCAGGCAGGATTCC
CAGGAAGCACTGGTCCATTCAGGTTTACACCGAGTTCTGACTTTCCTACCTACCCACCAGCAGC
TACAGAAGGACCCAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCAGTCTTTAGAAAGAAG
CACGTCTGCTGTGACTGCAAGAAGGACTTTTGCTCCCTTTGTTCGGTCTCACAAGAAAACCTCC
GCAGATGCTCTACATGTCACCTACTCCAAGAGACAGCCTTCCAGCGCCCTCAGTTGATGAGACT
AAAAGTGAAGGACCTGCGGCAGTATCTGCTCCTCAGAAACGTACCGACCGACACTTGTCGCGAG
AAGGAGGACTTAGTGGATCTAGTGCTGTGCCATCGTGGACTGGGCTCGGGGGATGGCCTGGACT
CAAGGAGTCTCAGTTCCTCAAGATCCCAGACTTCTAGTTTTTTTACACAATCCTATTTTTCAAA
TTATACACCCCCCTCTGCTACTGTGTCCTCCTTCCAGGGAGAGCTGATGGACAGAGAGGGCACC
TTCAGGTCAGAAGTTCTCACACAGGTACAAAGTGAATTAGCTTCAGCAAACACGGATGATGAGG
ATGGGGAGGAAGATGACGACGATGATGACGATGACGACGACGAGGATGACGATGAACAAGAAGA
AAACTTAGAGGAACAGAACCCGGGGCTCTCTAAGAAGAAGGCGAGAGCTTCCCTGTCCGACCTG
TCAAGCCTTGAAGAGGTGGAAGGGATGAGCGTGCGCCAGCTGAAGGAAATCCTGGCTCGGAATT
TTGTCAACTATTCTGGCTGCTGTGAAAAGTGGGAGCTGGTGGAGAAAGTCAACCGGCTGTACAA
GGAGAATGAGGAAAACCAAAAGTCATATGGTGAGCGGATGCAACTTCAGGATGAGGAAGACGAC
AGCCTGTGCCGAATCTGCATGGATGCGGTCATTGACTGTGTCCTGCTGGAGTGTGGGCACATGG
TCACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCAGGCAGTATGTGGTTCG
AGCTGTGCATGTTTTCAAGTCCTGAAATTGAGGCCCCTACAGTGGGACACTCACATGACCCCAA
ACATTTCAGTGCACTAAAGGGACTGGAAACTTACTGTTCTAAGGCAGAAGCTATTTTTTAAAAT
TATTTTCATGACCAACTGGGGACAGAAAGTTCATCCTAAGTCTTAGAAACCTGGGCTGTGCCAT
AGGCCCGTCAACCGTGGACACATGGCTTCCCAGGTTCTGCTGAGTTCTGTCACTTGTCTCCCCT
GAGCACTAGGTGAAGCCAGACTGTTCAGTGTGGGTGTGGAGGCCACTCGCCTGTCTCTTACTTT
ACCTTTATCCTGTGTTTGACACTTTTGTTCTCTGAACTGAGCTCACTGTTCGTGACTGGGCTAG
TGTGGGCTCTCCTGAGCCGTAGCTGCTCGGAATGTTCACCTAATTAGCCATGTATATTCTAAAT
GCTAATACTTAATGAATGTACGTTTCAACATTATTGCTATTTCTGCATTTAAACATAATTGGGA
GACAACTGACATTCTATAGTCCACTGCCCGGGCCTTAGACTAAACGTCCATTTTTGTTTGGGTA
CAGCTTTTAATAGCAAGGGCTGCATCTAGCTTCTTATCTTAGAAGTGTATGTGTGCTAAATTCT
TTATTAATATGTAATCAATTTACAATGTTTTGTATAGTGAAGGTGTATTTTTAGTGCTACCTGC
TAGTAATTTCAACTTTAGGAATAAAATTAAATTAAAAGGCAAAAAAAAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_006249360 ⟹ XP_006249422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,364,461 - 39,384,210 (-)	NCBI
mRatBN7.2	12	33,703,756 - 33,722,284 (-)	NCBI
Rnor_6.0	12	39,164,290 - 39,182,431 (-)	NCBI
Rnor_5.0	12	41,057,289 - 41,078,204 (-)	NCBI

Sequence:

show sequence

AAAGAAAAAGAAAAAGGATATGACTCCTCCTGGGTGTGGAGAAATTTACTGTGGATAAAAGGTA
GAGCATAGCCAGAGGCAGGGACATCTGGGAGAGTCCACATGACCAAACTGAGCTGGACACAAAG
GAGAGGGGATGGAAGGCCAGAAAACCGGATGCATCAGCAAAGAGGCTCACAGGCGGGTGCTACC
TCTATGTGGGCTTCATGCTGTGGACTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGAGGCC
AGCAGGCAGGATTCCCAGGAAGCACTGGTCCATTCAGGTTTACACCGAGTTCTGACTTTCCTAC
CTACCCACCAGCAGCTACAGAAGGACCCAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCA
GTCTTTAGAAAGAAGCACGTCTGCTGTGACTGCAAGAAGGACTTTTGCTCCCTTTGTTCGGTCT
CACAAGAAAACCTCCGCAGATGCTCTACATGTCACCTACTCCAAGAGACAGCCTTCCAGCGCCC
TCAGTTGATGAGACTAAAAGTGAAGGACCTGCGGCAGTATCTGCTCCTCAGAAACGTACCGACC
GACACTTGTCGCGAGAAGGAGGACTTAGTGGATCTAGTGCTGTGCCATCGTGGACTGGGCTCGG
GGGATGGCCTGGACTCAAGGAGTCTCAGTTCCTCAAGATCCCAGACTTCTAGTTTTTTTACACA
ATCCTATTTTTCAAATTATACACCCCCCTCTGCTACTGTGTCCTCCTTCCAGGGAGAGCTGATG
GACAGAGAGGGCACCTTCAGGTCAGAAGTTCTCACACAGGTACAAAGTGAATTAGCTTCAGCAA
ACACGGATGATGAGGATGGGGAGGAAGATGACGACGATGATGACGATGACGACGACGAGGATGA
CGATGAACAAGAAGAAAACTTAGAGGAACAGAACCCGGGGCTCTCTAAGAAGAAGGCGAGAGCT
TCCCTGTCCGACCTGTCAAGCCTTGAAGAGGTGGAAGGGATGAGCGTGCGCCAGCTGAAGGAAA
TCCTGGCTCGGAATTTTGTCAACTATTCTGGCTGCTGTGAAAAGTGGGAGCTGGTGGAGAAAGT
CAACCGGCTGTACAAGGAGAATGAGGAAAACCAAAAGTCATATGGTGAGCGGATGCAACTTCAG
GATGAGGAAGACGACAGCCTGTGCCGAATCTGCATGGATGCGGTCATTGACTGTGTCCTGCTGG
AGTGTGGGCACATGGTCACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCAG
GCAGTATGTGGTTCGAGCTGTGCATGTTTTCAAGTCCTGAAATTGAGGCCCCTACAGTGGGACA
CTCACATGACCCCAAACATTTCAGTGCACTAAAGGGACTGGAAACTTACTGTTCTAAGGCAGAA
GCTATTTTTTAAAATTATTTTCATGACCAACTGGGGACAGAAAGTTCATCCTAAGTCTTAGAAA
CCTGGGCTGTGCCATAGGCCCGTCAACCGTGGACACATGGCTTCCCAGGTTCTGCTGAGTTCTG
TCACTTGTCTCCCCTGAGCACTAGGTGAAGCCAGACTGTTCAGTGTGGGTGTGGAGGCCACTCG
CCTGTCTCTTACTTTACCTTTATCCTGTGTTTGACACTTTTGTTCTCTGAACTGAGCTCACTGT
TCGTGACTGGGCTAGTGTGGGCTCTCCTGAGCCGTAGCTGCTCGGAATGTTCACCTAATTAGCC
ATGTATATTCTAAATGCTAATACTTAATGAATGTACGTTTCAACATTATTGCTATTTCTGCATT
TAAACATAATTGGGAGACAACTGACATTCTATAGTCCACTGCCCGGGCCTTAGACTAAACGTCC
ATTTTTGTTTGGGTACAGCTTTTAATAGCAAGGGCTGCATCTAGCTTCTTATCTTAGAAGTGTA
TGTGTGCTAAATTCTTTATTAATATGTAATCAATTTACAATGTTTTGTATAGTGAAGGTGTATT
TTTAGTGCTACCTGCTAGTAATTTCAACTTTAGGAATAAAATTAAATTAAAAGGC

hide sequence

RefSeq Acc Id:

XM_006249361 ⟹ XP_006249423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,364,461 - 39,385,391 (-)	NCBI
mRatBN7.2	12	33,703,655 - 33,724,606 (-)	NCBI
Rnor_6.0	12	39,164,290 - 39,185,209 (-)	NCBI
Rnor_5.0	12	41,057,289 - 41,078,204 (-)	NCBI

Sequence:

show sequence

CTTACGTAGGGACGCTCAGTCGGTCTCGGGAGGCGCCGCATTCGCCGCCTTAGAAGGAAGGAGG
TCCGTTGTGTGAGCAGTCTGCTATGGTGCTGAGTTCCCGGGTAGAGCCGACCGAGCCGAGGCGG
TCGCGGCCATGAAGGGTTCGATTCATCTCGTGGACGAAGTGTATTGGCTTGGGGCTGCTAGGTT
AACGACCTTTTACAAAGTGTCAAAGATTTACTGCGGACGATTGAAAAGAGCGTCAAGTAGAGAA
AATCAGCAAGTGTTTTGTCCAAGTCCTTCATTGTATTAGTCAAGGAGTAGAGGCGGGTGCTACC
TCTATGTGGGCTTCATGCTGTGGACTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGAGGCC
AGCAGGCAGGATTCCCAGGAAGCACTGGTCCATTCAGGTTTACACCGAGTTCTGACTTTCCTAC
CTACCCACCAGCAGCTACAGAAGGACCCAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCA
GTCTTTAGAAAGAAGCACGTCTGCTGTGACTGCAAGAAGGACTTTTGCTCCCTTTGTTCGGTCT
CACAAGAAAACCTCCGCAGATGCTCTACATGTCACCTACTCCAAGAGACAGCCTTCCAGCGCCC
TCAGTTGATGAGACTAAAAGTGAAGGACCTGCGGCAGTATCTGCTCCTCAGAAACGTACCGACC
GACACTTGTCGCGAGAAGGAGGACTTAGTGGATCTAGTGCTGTGCCATCGTGGACTGGGCTCGG
GGGATGGCCTGGACTCAAGGAGTCTCAGTTCCTCAAGATCCCAGACTTCTAGTTTTTTTACACA
ATCCTATTTTTCAAATTATACACCCCCCTCTGCTACTGTGTCCTCCTTCCAGGGAGAGCTGATG
GACAGAGAGGGCACCTTCAGGTCAGAAGTTCTCACACAGGTACAAAGTGAATTAGCTTCAGCAA
ACACGGATGATGAGGATGGGGAGGAAGATGACGACGATGATGACGATGACGACGACGAGGATGA
CGATGAACAAGAAGAAAACTTAGAGGAACAGAACCCGGGGCTCTCTAAGAAGAAGGCGAGAGCT
TCCCTGTCCGACCTGTCAAGCCTTGAAGAGGTGGAAGGGATGAGCGTGCGCCAGCTGAAGGAAA
TCCTGGCTCGGAATTTTGTCAACTATTCTGGCTGCTGTGAAAAGTGGGAGCTGGTGGAGAAAGT
CAACCGGCTGTACAAGGAGAATGAGGAAAACCAAAAGTCATATGGTGAGCGGATGCAACTTCAG
GATGAGGAAGACGACAGCCTGTGCCGAATCTGCATGGATGCGGTCATTGACTGTGTCCTGCTGG
AGTGTGGGCACATGGTCACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCAG
GCAGTATGTGGTTCGAGCTGTGCATGTTTTCAAGTCCTGAAATTGAGGCCCCTACAGTGGGACA
CTCACATGACCCCAAACATTTCAGTGCACTAAAGGGACTGGAAACTTACTGTTCTAAGGCAGAA
GCTATTTTTTAAAATTATTTTCATGACCAACTGGGGACAGAAAGTTCATCCTAAGTCTTAGAAA
CCTGGGCTGTGCCATAGGCCCGTCAACCGTGGACACATGGCTTCCCAGGTTCTGCTGAGTTCTG
TCACTTGTCTCCCCTGAGCACTAGGTGAAGCCAGACTGTTCAGTGTGGGTGTGGAGGCCACTCG
CCTGTCTCTTACTTTACCTTTATCCTGTGTTTGACACTTTTGTTCTCTGAACTGAGCTCACTGT
TCGTGACTGGGCTAGTGTGGGCTCTCCTGAGCCGTAGCTGCTCGGAATGTTCACCTAATTAGCC
ATGTATATTCTAAATGCTAATACTTAATGAATGTACGTTTCAACATTATTGCTATTTCTGCATT
TAAACATAATTGGGAGACAACTGACATTCTATAGTCCACTGCCCGGGCCTTAGACTAAACGTCC
ATTTTTGTTTGGGTACAGCTTTTAATAGCAAGGGCTGCATCTAGCTTCTTATCTTAGAAGTGTA
TGTGTGCTAAATTCTTTATTAATATGTAATCAATTTACAATGTTTTGTATAGTGAAGGTGTATT
TTTAGTGCTACCTGCTAGTAATTTCAACTTTAGGAATAAAATTAAATTAAAAGGC

hide sequence

RefSeq Acc Id:

XM_063271103 ⟹ XP_063127173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,364,461 - 39,385,391 (-)	NCBI

RefSeq Acc Id:

XM_063271104 ⟹ XP_063127174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,364,461 - 39,385,391 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004075	(Get FASTA)	NCBI Sequence Viewer
	XP_006249422	(Get FASTA)	NCBI Sequence Viewer
	XP_006249423	(Get FASTA)	NCBI Sequence Viewer
	XP_063127173	(Get FASTA)	NCBI Sequence Viewer
	XP_063127174	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79044	(Get FASTA)	NCBI Sequence Viewer
	AAN60073	(Get FASTA)	NCBI Sequence Viewer
	EDM13663	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001799
	ENSRNOP00000001799.4
	ENSRNOP00000080689
GenBank Protein	Q6AYH3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004075 ⟸ NM_001004075

- UniProtKB:

Q8CIP0 (UniProtKB/Swiss-Prot), Q6AYH3 (UniProtKB/Swiss-Prot), A6J174 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKAGATSMWASCCGLLNEVMGTGAVRGQQAGFPGSTGPFRFTPSSDFPTYPPAATEGPNIVCKA
CGLSFSVFRKKHVCCDCKKDFCSLCSVSQENLRRCSTCHLLQETAFQRPQLMRLKVKDLRQYLL
LRNVPTDTCREKEDLVDLVLCHRGLGSGDGLDSRSLSSSRSQTSSFFTQSYFSNYTPPSATVSS
FQGELMDREGTFRSEVLTQVQSELASANTDDEDGEEDDDDDDDDDDEDDDEQEENLEEQNPGLS
KKKARASLSDLSSLEEVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYG
ERMQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS

hide sequence

RefSeq Acc Id:

XP_006249423 ⟸ XM_006249361

- Peptide Label:

isoform X2

- Sequence:

show sequence

MWASCCGLLNEVMGTGAVRGQQAGFPGSTGPFRFTPSSDFPTYPPAATEGPNIVCKACGLSFSV
FRKKHVCCDCKKDFCSLCSVSQENLRRCSTCHLLQETAFQRPQLMRLKVKDLRQYLLLRNVPTD
TCREKEDLVDLVLCHRGLGSGDGLDSRSLSSSRSQTSSFFTQSYFSNYTPPSATVSSFQGELMD
REGTFRSEVLTQVQSELASANTDDEDGEEDDDDDDDDDDEDDDEQEENLEEQNPGLSKKKARAS
LSDLSSLEEVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYGERMQLQD
EEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS

hide sequence

RefSeq Acc Id:	XP_006249422 ⟸ XM_006249360
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G4W4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTKLSWTQRRGDGRPENRMHQQRGSQAGATSMWASCCGLLNEVMGTGAVRGQQAGFPGSTGPFR FTPSSDFPTYPPAATEGPNIVCKACGLSFSVFRKKHVCCDCKKDFCSLCSVSQENLRRCSTCHL LQETAFQRPQLMRLKVKDLRQYLLLRNVPTDTCREKEDLVDLVLCHRGLGSGDGLDSRSLSSSR SQTSSFFTQSYFSNYTPPSATVSSFQGELMDREGTFRSEVLTQVQSELASANTDDEDGEEDDDD DDDDDDEDDDEQEENLEEQNPGLSKKKARASLSDLSSLEEVEGMSVRQLKEILARNFVNYSGCC EKWELVEKVNRLYKENEENQKSYGERMQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGK RMSECPICRQYVVRAVHVFKS hide sequence

Ensembl Acc Id:

ENSRNOP00000001799 ⟸ ENSRNOT00000001799

Ensembl Acc Id:

ENSRNOP00000080689 ⟸ ENSRNOT00000103449

RefSeq Acc Id:	XP_063127174 ⟸ XM_063271104
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G4W4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127173 ⟸ XM_063271103
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G4W4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100687 ⟸ ENSRNOT00000141188

Protein Domains

RING-type SAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYH3-F1-model_v2	AlphaFold	Q6AYH3	1-381	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698638

Promoter ID:

EPDNEW_R9161

Type:

initiation region

Name:

Rnf34_1

Description:

ring finger protein 34

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	39,185,158 - 39,185,218	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628636	AgrOrtholog
BioCyc Gene	G2FUF-19277	BioCyc
Ensembl Genes	ENSRNOG00000001331	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001799	ENTREZGENE
	ENSRNOT00000001799.6	UniProtKB/Swiss-Prot
	ENSRNOT00000103449	ENTREZGENE
Gene3D-CATH	1.10.720.140	UniProtKB/Swiss-Prot
	1.10.720.30	UniProtKB/Swiss-Prot
	3.30.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7115027	IMAGE-MGC_LOAD
InterPro	CARP1_2_FYVE	UniProtKB/Swiss-Prot
	CARP1_FYVE	UniProtKB/Swiss-Prot
	RING-FYVE_E3_ubiquitin-ligase	UniProtKB/Swiss-Prot
	RNF34L-like_HeH	UniProtKB/Swiss-Prot
	SAP_dom_sf	UniProtKB/Swiss-Prot
	Znf_FYVE_PHD	UniProtKB/Swiss-Prot
	Znf_RING	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
KEGG Report	rno:282845	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93980	IMAGE-MGC_LOAD
NCBI Gene	282845	ENTREZGENE
PANTHER	CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING	UniProtKB/Swiss-Prot
	E3 UBIQUITIN-PROTEIN LIGASE RNF34	UniProtKB/Swiss-Prot
Pfam	FYVE_CARP1-2	UniProtKB/Swiss-Prot
	RNF34L-like_3rd	UniProtKB/Swiss-Prot
	SAP_RNF34_RFFL	UniProtKB/Swiss-Prot
	zf-C3HC4_3	UniProtKB/Swiss-Prot
PhenoGen	Rnf34	PhenoGen
PROSITE	ZF_RING_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001331	RatGTEx
SMART	RING	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
	SSF57903	UniProtKB/Swiss-Prot
	SSF68906	UniProtKB/Swiss-Prot
UniProt	A0A8I6G4W4	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LID5_RAT	UniProtKB/TrEMBL
	A6J174	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYH3	ENTREZGENE
	Q8CIP0	ENTREZGENE
	RNF34_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q8CIP0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-16	Rnf34	ring finger protein 34	Rnf34	ring finger protein 34, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-15	Rnf34	ring finger protein 34, E3 ubiquitin protein ligase	Rnf34	ring finger protein 34	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rnf34	ring finger protein 34			Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Rnf34	ring finger protein 34			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains two zinc finger motifs and a RING finger domain	708308
gene_expression	expressed in brain	708308

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD