Trpc3 (transient receptor potential cation channel, subfamily C, member 3) - Rat Genome Database

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Gene: Trpc3 (transient receptor potential cation channel, subfamily C, member 3) Mus musculus
Analyze
Symbol: Trpc3
Name: transient receptor potential cation channel, subfamily C, member 3
RGD ID: 62266
MGI Page MGI
Description: Predicted to enable calcium-activated cation channel activity; inositol 1,4,5 trisphosphate binding activity; and store-operated calcium channel activity. Predicted to be involved in several processes, including positive regulation of calcium ion transport into cytosol; positive regulation of cardiac muscle hypertrophy in response to stress; and response to ATP. Predicted to act upstream of or within calcium ion transport and monoatomic ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of cation channel complex. Predicted to be active in plasma membrane. Is expressed in several structures, including cochlea; ganglia; skeletal muscle; spinal cord; and trunk somite. Human ortholog(s) of this gene implicated in cerebellar ataxia type 41. Orthologous to human TRPC3 (transient receptor potential cation channel subfamily C member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC124333; mTrp3; Mwk; receptor-activated cation channel TRP3; short transient receptor potential channel 3; Tr; transient receptor protein 3; Trc; Trcp3; TRP-3; trp-related protein 3; Trp3; Trrp3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,674,626 - 36,744,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,674,631 - 36,744,316 (-)EnsemblGRCm39 Ensembl
GRCm38336,620,482 - 36,690,429 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,620,482 - 36,690,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,519,404 - 36,589,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36336,812,122 - 36,863,152 (-)NCBIMGSCv36mm8
Celera336,505,427 - 36,575,273 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (ISO)
1-Oleoyl-2-acetyl-sn-glycerol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (EXP)
asbestos  (ISO)
ATP  (EXP)
atrazine  (ISO)
barium(0)  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
caffeine  (EXP)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
carbachol  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlorpyrifos  (EXP)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
dimethylarsinic acid  (EXP)
doxorubicin  (ISO)
fenvalerate  (ISO)
gadolinium atom  (ISO)
gentamycin  (ISO)
GW 4064  (EXP)
ketamine  (ISO)
maneb  (EXP)
methacholine chloride  (ISO)
methoxychlor  (ISO)
methylarsonic acid  (EXP)
ozone  (EXP)
paclitaxel  (ISO)
paraquat  (EXP,ISO)
phenylephrine  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (EXP)
pyrethrins  (ISO)
rotenone  (ISO)
salvianolic acid B  (ISO)
SKF-96365 hydrochloride  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
testosterone  (ISO)
tetraphene  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (EXP)
UTP  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Tissue expression of TRPC3 and TRPC6 in hypertensive Munich Wistar Fromter rats showing proteinuria. Liu Y, etal., Am J Nephrol. 2010;31(1):36-44. doi: 10.1159/000254060. Epub 2009 Oct 30.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. A calcium-activated cation current by an alternatively spliced form of Trp3 in the heart. Ohki G, etal., J Biol Chem 2000 Dec 15;275(50):39055-60.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Enhanced expression of transient receptor potential channels in idiopathic pulmonary arterial hypertension. Yu Y, etal., Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13861-6. Epub 2004 Sep 9.
9. trp, a novel mammalian gene family essential for agonist-activated capacitative Ca2+ entry. Zhu X, etal., Cell 1996 May 31;85(5):661-71.
Additional References at PubMed
PMID:8889548   PMID:9512398   PMID:9722956   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11390792   PMID:12098215   PMID:12477932   PMID:15199180   PMID:15336983  
PMID:15611229   PMID:15728370   PMID:16141072   PMID:16141073   PMID:16446141   PMID:16460286   PMID:16484216   PMID:16516881   PMID:16602821   PMID:16873889   PMID:17480026   PMID:17553423  
PMID:17624307   PMID:18184790   PMID:18184877   PMID:18215135   PMID:18400903   PMID:18498732   PMID:18498735   PMID:18701065   PMID:18989690   PMID:19141536   PMID:19322198   PMID:19351902  
PMID:19521566   PMID:19554387   PMID:19622358   PMID:19648473   PMID:19812035   PMID:19834762   PMID:20059953   PMID:20107112   PMID:20229053   PMID:20351294   PMID:20644344   PMID:21261756  
PMID:21267068   PMID:21300867   PMID:21354153   PMID:21421818   PMID:21565173   PMID:21653882   PMID:21677750   PMID:21684255   PMID:21873635   PMID:21924222   PMID:22027011   PMID:22051675  
PMID:22188405   PMID:22207762   PMID:22411552   PMID:22674725   PMID:22721989   PMID:22724068   PMID:22895723   PMID:22989752   PMID:23095462   PMID:23115168   PMID:23131343   PMID:23233529  
PMID:23442051   PMID:23776229   PMID:23800468   PMID:23832809   PMID:23852583   PMID:24101197   PMID:24194600   PMID:24336732   PMID:24449818   PMID:24453217   PMID:24464579   PMID:24516396  
PMID:24613381   PMID:25031020   PMID:25142058   PMID:25213992   PMID:25310225   PMID:25347706   PMID:25471572   PMID:25479966   PMID:25513972   PMID:25631581   PMID:25834056   PMID:25908616  
PMID:25910575   PMID:25917213   PMID:26108359   PMID:26112884   PMID:26141232   PMID:26373801   PMID:26453517   PMID:26520460   PMID:26985029   PMID:27177420   PMID:27449657   PMID:27522668  
PMID:27626380   PMID:27833156   PMID:27861908   PMID:27899482   PMID:27904950   PMID:27979597   PMID:27991560   PMID:28012173   PMID:28034747   PMID:28105583   PMID:28181498   PMID:28186192  
PMID:28314773   PMID:28526717   PMID:28636132   PMID:28711495   PMID:28711865   PMID:28790356   PMID:28802903   PMID:29290366   PMID:29392682   PMID:29435486   PMID:29624776   PMID:30017393  
PMID:30120731   PMID:30270038   PMID:30452936   PMID:30786075   PMID:30910829   PMID:31486767   PMID:31540954   PMID:31543348   PMID:31680473   PMID:31851715   PMID:31964991   PMID:32140760  
PMID:32219126   PMID:32350291   PMID:32414784   PMID:32882106   PMID:33069962   PMID:33428139   PMID:33884443   PMID:34409942   PMID:34815492   PMID:35507377   PMID:35805125   PMID:35904193  
PMID:36029194   PMID:36257322   PMID:36433745   PMID:36569761   PMID:36592529   PMID:36642838   PMID:37031239   PMID:37511045   PMID:37628789   PMID:37977270   PMID:38425503  


Genomics

Comparative Map Data
Trpc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,674,626 - 36,744,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,674,631 - 36,744,316 (-)EnsemblGRCm39 Ensembl
GRCm38336,620,482 - 36,690,429 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,620,482 - 36,690,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,519,404 - 36,589,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36336,812,122 - 36,863,152 (-)NCBIMGSCv36mm8
Celera336,505,427 - 36,575,273 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.93NCBI
TRPC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,874,481 - 121,952,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4121,874,481 - 121,952,060 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,795,636 - 122,873,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,019,882 - 123,074,061 (-)NCBINCBI36Build 36hg18NCBI36
Build 344123,158,037 - 123,212,216NCBI
Celera4120,186,020 - 120,258,701 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4118,526,892 - 118,599,598 (-)NCBIHuRef
CHM1_14122,776,636 - 122,849,349 (-)NCBICHM1_1
T2T-CHM13v2.04125,178,529 - 125,256,098 (-)NCBIT2T-CHM13v2.0
Trpc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82121,409,436 - 121,487,095 (-)NCBIGRCr8
mRatBN7.22119,481,313 - 119,619,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2119,481,400 - 119,558,855 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2126,036,120 - 126,102,387 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,148,616 - 124,214,886 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,777,565 - 118,843,835 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02123,329,954 - 123,467,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,329,875 - 123,407,496 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,945,309 - 143,022,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,117,180 - 123,184,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12123,062,239 - 123,110,364 (-)NCBI
Celera2114,439,430 - 114,505,661 (-)NCBICelera
Cytogenetic Map2q25NCBI
Trpc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,628,890 - 18,678,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,628,951 - 18,678,525 (+)NCBIChiLan1.0ChiLan1.0
TRPC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23119,675,137 - 119,748,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14119,944,205 - 120,017,773 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04114,079,395 - 114,153,014 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14125,217,086 - 125,288,918 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,217,086 - 125,289,014 (-)Ensemblpanpan1.1panPan2
TRPC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,207,565 - 18,272,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,207,417 - 18,271,828 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,424,474 - 18,489,427 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01918,325,131 - 18,390,132 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1918,257,209 - 18,389,851 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11918,276,335 - 18,341,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01918,557,985 - 18,622,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01919,033,797 - 19,098,726 (+)NCBIUU_Cfam_GSD_1.0
Trpc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366621,129,278 - 1,171,378 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,129,611 - 102,206,946 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,129,539 - 102,206,512 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,324,967 - 109,402,046 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,160,569 - 69,233,322 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl769,158,867 - 69,231,858 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603748,122,249 - 48,196,700 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247772,153,265 - 2,232,449 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247772,154,887 - 2,232,476 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpc3
2639 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:480
Count of miRNA genes:366
Interacting mature miRNAs:396
Transcripts:ENSMUST00000029271, ENSMUST00000123220, ENSMUST00000129322, ENSMUST00000133542, ENSMUST00000146475
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
1357689Mdmsc1_mmodifier of muscularity 1 (mouse)Not determined33332720145916479Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
13441578Jobes1b_mjuvenile obesity 1b (mouse)33653414936904149Mouse

Markers in Region
Trpc3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38336,621,100 - 36,621,233UniSTSGRCm38
MGSCv37336,520,022 - 36,520,155UniSTSGRCm37
Celera336,506,048 - 36,506,181UniSTS
Cytogenetic Map3BUniSTS
cM Map318.2UniSTS
Trrp3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
cM Map318.2UniSTS
Trpc3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
Trpc3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
Trpc3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000029271   ⟹   ENSMUSP00000029271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,674,631 - 36,744,316 (-)Ensembl
GRCm38.p6 Ensembl336,620,482 - 36,690,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,674,711 - 36,675,510 (-)Ensembl
GRCm38.p6 Ensembl336,620,562 - 36,621,361 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,674,711 - 36,675,488 (-)Ensembl
GRCm38.p6 Ensembl336,620,562 - 36,621,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,692,505 - 36,694,769 (-)Ensembl
GRCm38.p6 Ensembl336,638,356 - 36,640,620 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl336,723,352 - 36,744,316 (-)Ensembl
GRCm38.p6 Ensembl336,669,203 - 36,690,167 (-)Ensembl
RefSeq Acc Id: NM_001403842   ⟹   NP_001390771
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39336,674,626 - 36,744,276 (-)NCBI
RefSeq Acc Id: NM_019510   ⟹   NP_062383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39336,674,626 - 36,744,276 (-)NCBI
GRCm38336,620,482 - 36,690,167 (-)NCBI
MGSCv37336,519,404 - 36,589,089 (-)RGD
Celera336,505,427 - 36,575,273 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_062383   ⟸   NM_019510
- Peptide Label: isoform 1
- UniProtKB: Q9QZC1 (UniProtKB/Swiss-Prot),   Q61058 (UniProtKB/Swiss-Prot),   B1ATV3 (UniProtKB/TrEMBL),   Q8CCQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000029271   ⟸   ENSMUST00000029271
RefSeq Acc Id: NP_001390771   ⟸   NM_001403842
- Peptide Label: isoform 2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QZC1-F1-model_v2 AlphaFold Q9QZC1 1-836 view protein structure

Promoters
RGD ID:6834581
Promoter ID:MM_KWN:34099
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:UC008OZS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36336,570,104 - 36,570,604 (-)MPROMDB
RGD ID:6880502
Promoter ID:EPDNEW_M3702
Type:multiple initiation site
Name:Trpc3_1
Description:Mus musculus transient receptor potential cation channel, subfamilyC, member 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38336,690,127 - 36,690,187EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109526 AgrOrtholog
Ensembl Genes ENSMUSG00000027716 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000029271 ENTREZGENE
  ENSMUST00000029271.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC3_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22065 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109526 ENTREZGENE
NCBI Gene 22065 ENTREZGENE
PANTHER PTHR10117 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10117:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpc3 PhenoGen
PRINTS TRNSRECEPTRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPCHANNEL3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ATV3 ENTREZGENE
  E6Y6Q0_MOUSE UniProtKB/TrEMBL
  Q2VPD3_MOUSE UniProtKB/TrEMBL
  Q32MT5_MOUSE UniProtKB/TrEMBL
  Q61058 ENTREZGENE
  Q8BNT8_MOUSE UniProtKB/TrEMBL
  Q8CCQ1 ENTREZGENE, UniProtKB/TrEMBL
  Q9QZC1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B1ATV3 UniProtKB/Swiss-Prot
  Q61058 UniProtKB/Swiss-Prot