Cnn1 (calponin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cnn1 (calponin 1) Rattus norvegicus
Analyze
Symbol: Cnn1
Name: calponin 1
RGD ID: 621883
Description: Enables actin binding activity. Predicted to be involved in actin filament organization and negative regulation of vascular associated smooth muscle cell proliferation. Predicted to be located in cytoskeleton. Predicted to be active in actin cytoskeleton. Orthologous to human CNN1 (calponin 1); INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: basic calponin; calponin 1 smooth muscle; calponin 1, basic, smooth muscle; calponin 1, smooth muscle; calponin H1, smooth muscle; calponin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,908,437 - 28,917,099 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,908,330 - 28,919,482 (+)EnsemblGRCr8
mRatBN7.2820,632,434 - 20,641,097 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,632,338 - 20,641,098 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,661,337 - 24,670,331 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,958,475 - 22,967,472 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,861,968 - 20,870,646 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0823,113,083 - 23,121,748 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,113,048 - 23,121,761 (+)Ensemblrn6Rnor6.0
Rnor_5.0823,167,867 - 23,176,532 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,210,524 - 21,221,024 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera822,022,653 - 22,031,180 (+)NCBICelera
RGSC_v3.1821,210,526 - 21,221,024 (+)NCBI
Cytogenetic Map8q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trimethylbenzene  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
25-hydroxycholesterol  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (ISO)
9-cis-retinoic acid  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
amphibole asbestos  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
brequinar  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP)
diquat  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
folpet  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
glucose  (ISO)
graphene oxide  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoflavones  (EXP)
L-ascorbic acid  (EXP,ISO)
leflunomide  (ISO)
methylmercury chloride  (ISO)
Monobutylphthalate  (ISO)
Muraglitazar  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
nitrofen  (EXP)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (EXP)
resveratrol  (ISO)
roflumilast  (ISO)
SB 203580  (ISO)
sevoflurane  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
undecane  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vitamin K  (EXP)
warfarin  (EXP)
XL147  (ISO)
zaragozic acid A  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The molecular basis for the autoregulation of calponin by isoform-specific C-terminal tail sequences. Burgstaller G, etal., J Cell Sci 2002 May 15;115(Pt 10):2021-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. cDNA cloning and mRNA expression of calponin and SM22 in rat aorta smooth muscle cells. Nishida W, etal., Gene 1993 Aug 25;130(2):297-302.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Isolation of gene markers of differentiated and proliferating vascular smooth muscle cells. Shanahan CM, etal., Circ Res 1993 Jul;73(1):193-204.
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8616889   PMID:12716472   PMID:14620880   PMID:15489334   PMID:16428310   PMID:17078028   PMID:17487264   PMID:18566890   PMID:20181831   PMID:21423176   PMID:22049796   PMID:22199370  
PMID:23557080   PMID:25108144   PMID:26315405   PMID:27531060   PMID:28374979   PMID:28457943   PMID:30339939  


Genomics

Comparative Map Data
Cnn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,908,437 - 28,917,099 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,908,330 - 28,919,482 (+)EnsemblGRCr8
mRatBN7.2820,632,434 - 20,641,097 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,632,338 - 20,641,098 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,661,337 - 24,670,331 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,958,475 - 22,967,472 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,861,968 - 20,870,646 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0823,113,083 - 23,121,748 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,113,048 - 23,121,761 (+)Ensemblrn6Rnor6.0
Rnor_5.0823,167,867 - 23,176,532 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,210,524 - 21,221,024 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera822,022,653 - 22,031,180 (+)NCBICelera
RGSC_v3.1821,210,526 - 21,221,024 (+)NCBI
Cytogenetic Map8q13NCBI
CNN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,538,851 - 11,550,323 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,538,767 - 11,550,323 (+)Ensemblhg38GRCh38
GRCh371911,649,666 - 11,661,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,510,579 - 11,522,138 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341911,510,578 - 11,522,138NCBI
Celera1911,544,322 - 11,555,881 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,224,160 - 11,235,718 (+)NCBIHuRef
CHM1_11911,649,645 - 11,661,204 (+)NCBICHM1_1
T2T-CHM13v2.01911,666,362 - 11,677,836 (+)NCBIT2T-CHM13v2.0
Cnn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,010,501 - 22,020,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,010,512 - 22,020,926 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38922,099,221 - 22,109,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,099,216 - 22,109,630 (+)Ensemblmm10GRCm38
MGSCv37921,903,697 - 21,913,665 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36921,849,683 - 21,860,032 (+)NCBIMGSCv36mm8
Celera919,368,227 - 19,378,195 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map98.3NCBI
Cnn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,394,724 - 2,401,778 (+)Ensembl
ChiLan1.0NW_0049554952,394,724 - 2,401,236 (+)NCBIChiLan1.0ChiLan1.0
CNN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,451,391 - 16,462,914 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,450,099 - 15,461,943 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,084,862 - 11,096,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,796,523 - 11,807,680 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,796,523 - 11,807,680 (+)EnsemblpanPan2panpan1.1
CNN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,830,859 - 49,837,432 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,831,265 - 49,837,385 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2049,701,977 - 49,708,548 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02050,349,147 - 50,355,718 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,349,149 - 50,355,683 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,559,474 - 49,566,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,985,630 - 49,992,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,228,604 - 50,235,177 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cnn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,775,112 - 208,784,025 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,572,839 - 1,579,613 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,572,839 - 1,579,594 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,183,364 - 70,190,752 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1270,183,370 - 70,190,756 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,536,430 - 70,544,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,461,140 - 10,470,813 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,461,263 - 10,470,862 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660749,379,569 - 9,390,583 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,283,817 - 3,290,401 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248283,283,830 - 3,290,274 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cnn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1818,349,443 - 18,359,215 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cnn1
66 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:254
Count of miRNA genes:153
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000029577
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat

Markers in Region
RH131049  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,640,686 - 20,640,898 (+)MAPPERmRatBN7.2
Rnor_6.0823,121,338 - 23,121,549NCBIRnor6.0
Rnor_5.0823,176,122 - 23,176,333UniSTSRnor5.0
RGSC_v3.4821,220,614 - 21,220,825UniSTSRGSC3.4
Celera822,030,770 - 22,030,981UniSTS
RH 3.4 Map8181.7UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 136 91 90 59 32 59 6 288 132 10 112 73 92 31 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000029577   ⟹   ENSRNOP00000029782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,908,392 - 28,917,602 (+)Ensembl
mRatBN7.2 Ensembl820,632,410 - 20,641,098 (+)Ensembl
Rnor_6.0 Ensembl823,113,048 - 23,121,761 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096004   ⟹   ENSRNOP00000085657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,908,392 - 28,916,336 (+)Ensembl
mRatBN7.2 Ensembl820,632,338 - 20,640,334 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106276   ⟹   ENSRNOP00000080119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,908,330 - 28,919,482 (+)Ensembl
mRatBN7.2 Ensembl820,632,415 - 20,641,098 (+)Ensembl
RefSeq Acc Id: NM_031747   ⟹   NP_113935
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,908,437 - 28,917,099 (+)NCBI
mRatBN7.2820,632,434 - 20,641,097 (+)NCBI
Rnor_6.0823,113,083 - 23,121,748 (+)NCBI
Rnor_5.0823,167,867 - 23,176,532 (+)NCBI
RGSC_v3.4821,210,524 - 21,221,024 (+)RGD
Celera822,022,653 - 22,031,180 (+)RGD
Sequence:
RefSeq Acc Id: NP_113935   ⟸   NM_031747
- UniProtKB: Q08290 (UniProtKB/Swiss-Prot),   A6JNY4 (UniProtKB/TrEMBL),   A0A8L2QH34 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029782   ⟸   ENSRNOT00000029577
Ensembl Acc Id: ENSRNOP00000080119   ⟸   ENSRNOT00000106276
Ensembl Acc Id: ENSRNOP00000085657   ⟸   ENSRNOT00000096004
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08290-F1-model_v2 AlphaFold Q08290 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695805
Promoter ID:EPDNEW_R6328
Type:single initiation site
Name:Cnn1_1
Description:calponin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0823,113,064 - 23,113,124EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621883 AgrOrtholog
BioCyc Gene G2FUF-31389 BioCyc
Ensembl Genes ENSRNOG00000027736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029577 ENTREZGENE
  ENSRNOT00000106276.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5598777 IMAGE-MGC_LOAD
InterPro Calponin-like UniProtKB/Swiss-Prot
  Calponin/LIMCH1 UniProtKB/Swiss-Prot
  Calponin_repeat UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  SM22_calponin UniProtKB/Swiss-Prot
KEGG Report rno:65204 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72389 IMAGE-MGC_LOAD
NCBI Gene 65204 ENTREZGENE
PANTHER CALPONIN UniProtKB/Swiss-Prot
  TRANSGELIN-3 UniProtKB/Swiss-Prot
Pfam Calponin UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PhenoGen Cnn1 PhenoGen
PRINTS CALPONIN UniProtKB/Swiss-Prot
  SM22CALPONIN UniProtKB/Swiss-Prot
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot
  CALPONIN_2 UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000027736 RatGTEx
SMART SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot
UniProt A0A8I6GD56_RAT UniProtKB/TrEMBL
  A0A8L2QH34 ENTREZGENE, UniProtKB/TrEMBL
  A6JNY3_RAT UniProtKB/TrEMBL
  A6JNY4 ENTREZGENE, UniProtKB/TrEMBL
  A6JNY5_RAT UniProtKB/TrEMBL
  A6JNY6_RAT UniProtKB/TrEMBL
  CNN1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Cnn1  calponin 1  Cnn1  calponin 1, basic, smooth muscle  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Cnn1  calponin 1, basic, smooth muscle  Cnn1  calponin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Cnn1  calponin 1    Calponin 1  Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Cnn1        Symbol and Name status set to provisional 70820 PROVISIONAL