Dnah1 (dynein, axonemal, heavy chain 1) - Rat Genome Database

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Gene: Dnah1 (dynein, axonemal, heavy chain 1) Rattus norvegicus
Analyze
Symbol: Dnah1
Name: dynein, axonemal, heavy chain 1
RGD ID: 621795
Description: Predicted to enable dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and minus-end-directed microtubule motor activity. Predicted to be involved in sperm axoneme assembly. Predicted to act upstream of or within cilium movement involved in cell motility; epithelial cilium movement involved in extracellular fluid movement; and inner dynein arm assembly. Predicted to be located in axoneme. Predicted to be part of inner dynein arm. Predicted to be active in sperm flagellum. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 37 and spermatogenic failure 18. Orthologous to human DNAH1 (dynein axonemal heavy chain 1); PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: axonemal beta dynein heavy chain 1; ciliary dynein heavy chain 1; Dnahc1; dynein axonemal heavy chain 1; dynein heavy chain 1, axonemal; dynein, axonemal, heavy polypeptide 1; LOC306258; RGD1311110; similar to KIAA1410 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,462,419 - 6,523,545 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,462,419 - 6,524,760 (-)EnsemblGRCr8
mRatBN7.2166,455,514 - 6,517,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,456,002 - 6,518,350 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx166,468,161 - 6,529,167 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,613,057 - 7,674,063 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,475,315 - 6,536,251 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,345,131 - 7,407,009 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,345,978 - 7,408,265 (-)Ensemblrn6Rnor6.0
Rnor_5.0167,273,266 - 7,336,037 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,693,763 - 6,754,535 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,672,026 - 8,733,031 (+)NCBICelera
RGSC_v3.1166,724,485 - 6,726,552 (-)NCBI
Cytogenetic Map16p16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (IEA,ISO,ISS)
cilium  (IEA)
dynein complex  (IBA,IEA)
extracellular region  (IEA)
inner dynein arm  (ISO)
microtubule  (IEA)
motile cilium  (IEA)
sperm flagellum  (IBA,IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification and molecular evolution of new dynein-like protein sequences in rat brain. Tanaka Y, etal., J Cell Sci 1995 May;108 ( Pt 5):1883-93.
Additional References at PubMed
PMID:11371505   PMID:24360805   PMID:27798045  


Genomics

Comparative Map Data
Dnah1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,462,419 - 6,523,545 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,462,419 - 6,524,760 (-)EnsemblGRCr8
mRatBN7.2166,455,514 - 6,517,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,456,002 - 6,518,350 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx166,468,161 - 6,529,167 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,613,057 - 7,674,063 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,475,315 - 6,536,251 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,345,131 - 7,407,009 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,345,978 - 7,408,265 (-)Ensemblrn6Rnor6.0
Rnor_5.0167,273,266 - 7,336,037 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,693,763 - 6,754,535 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,672,026 - 8,733,031 (+)NCBICelera
RGSC_v3.1166,724,485 - 6,726,552 (-)NCBI
Cytogenetic Map16p16NCBI
DNAH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,310,920 - 52,400,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,316,319 - 52,400,492 (+)Ensemblhg38GRCh38
GRCh37352,350,335 - 52,434,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,325,560 - 52,409,547 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34352,370,292 - 52,370,408NCBI
Celera352,329,658 - 52,413,835 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,412,962 - 52,497,148 (+)NCBIHuRef
CHM1_1352,302,860 - 52,387,039 (+)NCBICHM1_1
T2T-CHM13v2.0352,349,219 - 52,433,474 (+)NCBIT2T-CHM13v2.0
Dnah1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,982,332 - 31,045,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,982,332 - 31,045,853 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381431,260,375 - 31,325,891 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,260,375 - 31,323,896 (-)Ensemblmm10GRCm38
MGSCv371432,073,561 - 32,137,082 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361430,089,384 - 30,152,900 (-)NCBIMGSCv36mm8
Celera1427,518,985 - 27,582,573 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map148.3NCBI
Dnah1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,327,584 - 2,391,423 (+)Ensembl
ChiLan1.0NW_0049554302,323,928 - 2,391,470 (+)NCBIChiLan1.0ChiLan1.0
DNAH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,286,445 - 52,395,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,291,216 - 52,400,530 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,233,271 - 52,342,627 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,491,822 - 53,572,393 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,491,822 - 53,572,393 (+)EnsemblpanPan2panpan1.1
DNAH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,364,836 - 37,441,486 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,364,842 - 37,465,807 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2037,346,392 - 37,423,030 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02037,714,963 - 37,791,616 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,714,969 - 37,787,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,078,913 - 37,155,548 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,487,581 - 37,564,217 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,772,261 - 37,848,897 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dnah1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,027,586 - 170,099,756 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,170,060 - 3,238,282 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,170,060 - 3,238,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,445,498 - 34,544,148 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11334,455,154 - 34,544,147 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,676,725 - 37,757,893 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,678,132 - 13,764,988 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,683,487 - 13,764,937 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041153,136,706 - 153,219,491 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnah1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,819,019 - 4,878,438 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248224,818,972 - 4,882,076 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dnah1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1136,963,505 - 7,024,152 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dnah1
307 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:76
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000035009, ENSRNOT00000066508
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161177108157035Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 12 63 160 89 88 57 90 57 6 345 186 11 139 80 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000035009   ⟹   ENSRNOP00000032434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,462,419 - 6,524,760 (-)Ensembl
mRatBN7.2 Ensembl166,456,002 - 6,518,350 (-)Ensembl
Rnor_6.0 Ensembl167,346,032 - 7,408,265 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000066508   ⟹   ENSRNOP00000059841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,462,419 - 6,523,446 (-)Ensembl
mRatBN7.2 Ensembl166,456,002 - 6,517,036 (-)Ensembl
Rnor_6.0 Ensembl167,345,978 - 7,406,951 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113143   ⟹   ENSRNOP00000076750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,456,002 - 6,518,350 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114829   ⟹   ENSRNOP00000091035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,465,206 - 6,523,446 (-)Ensembl
mRatBN7.2 Ensembl166,456,002 - 6,517,036 (-)Ensembl
RefSeq Acc Id: NM_001033655   ⟹   NP_001028827
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,419 - 6,523,446 (-)NCBI
mRatBN7.2166,456,002 - 6,517,036 (-)NCBI
Rnor_6.0167,345,978 - 7,406,951 (-)NCBI
Rnor_5.0167,273,266 - 7,336,037 (-)NCBI
RGSC_v3.4166,693,763 - 6,754,535 (-)RGD
Celera168,672,026 - 8,733,031 (+)RGD
Sequence:
RefSeq Acc Id: XM_008770978   ⟹   XP_008769200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,463,706 - 6,523,545 (-)NCBI
mRatBN7.2166,457,282 - 6,517,103 (-)NCBI
Rnor_6.0167,347,303 - 7,407,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599982   ⟹   XP_017455471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,428 - 6,523,545 (-)NCBI
mRatBN7.2166,456,004 - 6,517,103 (-)NCBI
Rnor_6.0167,345,131 - 7,407,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599983   ⟹   XP_017455472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,428 - 6,523,531 (-)NCBI
mRatBN7.2166,456,004 - 6,517,103 (-)NCBI
Rnor_6.0167,345,131 - 7,407,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599984   ⟹   XP_017455473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,469,002 - 6,523,545 (-)NCBI
mRatBN7.2166,462,638 - 6,517,103 (-)NCBI
Rnor_6.0167,352,542 - 7,407,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094184   ⟹   XP_038950112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,428 - 6,523,545 (-)NCBI
mRatBN7.2166,456,004 - 6,517,103 (-)NCBI
RefSeq Acc Id: XM_039094185   ⟹   XP_038950113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,428 - 6,516,058 (-)NCBI
mRatBN7.2166,456,004 - 6,509,646 (-)NCBI
RefSeq Acc Id: XM_039094186   ⟹   XP_038950114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,428 - 6,503,647 (-)NCBI
mRatBN7.2166,456,004 - 6,497,232 (-)NCBI
RefSeq Acc Id: XM_063275052   ⟹   XP_063131122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,462,428 - 6,523,545 (-)NCBI
RefSeq Acc Id: XR_005494532
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,475,584 - 6,523,545 (-)NCBI
mRatBN7.2166,469,164 - 6,517,103 (-)NCBI
RefSeq Acc Id: NP_001028827   ⟸   NM_001033655
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot),   D3ZRN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769200   ⟸   XM_008770978
- Peptide Label: isoform X6
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017455472   ⟸   XM_017599983
- Peptide Label: isoform X3
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017455471   ⟸   XM_017599982
- Peptide Label: isoform X2
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot),   A0A8I6GJB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455473   ⟸   XM_017599984
- Peptide Label: isoform X8
- Sequence:
Ensembl Acc Id: ENSRNOP00000059841   ⟸   ENSRNOT00000066508
Ensembl Acc Id: ENSRNOP00000032434   ⟸   ENSRNOT00000035009
RefSeq Acc Id: XP_038950112   ⟸   XM_039094184
- Peptide Label: isoform X1
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038950113   ⟸   XM_039094185
- Peptide Label: isoform X5
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038950114   ⟸   XM_039094186
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000076750   ⟸   ENSRNOT00000113143
Ensembl Acc Id: ENSRNOP00000091035   ⟸   ENSRNOT00000114829
RefSeq Acc Id: XP_063131122   ⟸   XM_063275052
- Peptide Label: isoform X4
- UniProtKB: Q63164 (UniProtKB/Swiss-Prot)
Protein Domains
Dynein heavy chain 3 AAA+ lid   Dynein heavy chain AAA 5 extension   Dynein heavy chain AAA lid   Dynein heavy chain AAA module D4   Dynein heavy chain ATP-binding dynein motor region   Dynein heavy chain C-terminal   Dynein heavy chain coiled coil stalk   Dynein heavy chain hydrolytic ATP-binding dynein   Dynein heavy chain linker   Dynein heavy chain region D6 P-loop

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699931
Promoter ID:EPDNEW_R10454
Type:single initiation site
Name:Dnah1_1
Description:dynein, axonemal, heavy chain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0167,406,976 - 7,407,036EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621795 AgrOrtholog
BioCyc Gene G2FUF-12153 BioCyc
Ensembl Genes ENSRNOG00000026914 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000035009.7 UniProtKB/Swiss-Prot
  ENSRNOT00000066508 ENTREZGENE
  ENSRNOT00000113143.1 UniProtKB/Swiss-Prot
  ENSRNOT00000114829 ENTREZGENE
Gene3D-CATH 1.10.287.2620 UniProtKB/Swiss-Prot
  1.10.472.130 UniProtKB/Swiss-Prot
  1.10.8.1220 UniProtKB/Swiss-Prot
  1.10.8.710 UniProtKB/Swiss-Prot
  1.10.8.720 UniProtKB/Swiss-Prot
  1.20.1270.280 UniProtKB/Swiss-Prot
  1.20.140.100 UniProtKB/Swiss-Prot
  1.20.58.1120 UniProtKB/Swiss-Prot
  1.20.920.20 UniProtKB/Swiss-Prot
  1.20.920.30 UniProtKB/Swiss-Prot
  3.10.490.20 UniProtKB/Swiss-Prot
  3.20.180.20 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
  6.10.140.1060 UniProtKB/Swiss-Prot
InterPro AAA_6 UniProtKB/Swiss-Prot
  AAA_9 UniProtKB/Swiss-Prot
  AAA_lid_11 UniProtKB/Swiss-Prot
  AAA_lid_11_sf UniProtKB/Swiss-Prot
  DHC_fam UniProtKB/Swiss-Prot
  DNAH3_AAA_lid_1 UniProtKB/Swiss-Prot
  Dynein_2_C UniProtKB/Swiss-Prot
  Dynein_2_N UniProtKB/Swiss-Prot
  Dynein_AAA1S UniProtKB/Swiss-Prot
  Dynein_AAA5_ext UniProtKB/Swiss-Prot
  Dynein_C UniProtKB/Swiss-Prot
  Dynein_C_barrel UniProtKB/Swiss-Prot
  Dynein_HC_stalk UniProtKB/Swiss-Prot
  Dynein_heavy_chain_D4_dom UniProtKB/Swiss-Prot
  Dynein_heavy_D6_P-loop UniProtKB/Swiss-Prot
  Dynein_heavy_dom-2 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report rno:171339 UniProtKB/Swiss-Prot
NCBI Gene 171339 ENTREZGENE
PANTHER DYNEIN AXONEMAL HEAVY CHAIN 1 UniProtKB/Swiss-Prot
  DYNEIN HEAVY CHAIN 6, AXONEMAL-LIKE-RELATED UniProtKB/Swiss-Prot
Pfam AAA_6 UniProtKB/Swiss-Prot
  AAA_7 UniProtKB/Swiss-Prot
  AAA_8 UniProtKB/Swiss-Prot
  AAA_9 UniProtKB/Swiss-Prot
  AAA_lid_1 UniProtKB/Swiss-Prot
  AAA_lid_11 UniProtKB/Swiss-Prot
  DHC_N2 UniProtKB/Swiss-Prot
  Dynein_AAA_lid UniProtKB/Swiss-Prot
  Dynein_C UniProtKB/Swiss-Prot
  Dynein_heavy UniProtKB/Swiss-Prot
  PF12777 UniProtKB/Swiss-Prot
PhenoGen Dnah1 PhenoGen
RatGTEx ENSRNOG00000026914 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I6GJB4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRN8 ENTREZGENE, UniProtKB/TrEMBL
  DYH1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-17 Dnah1  dynein, axonemal, heavy chain 1  Dnahc1  dynein, axonemal, heavy chain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Dnahc1  dynein, axonemal, heavy chain 1  Dnah1  dynein, axonemal, heavy polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-19 Dnah1  dynein, axonemal, heavy polypeptide 1  RGD1311110_predicted  similar to KIAA1410 protein (predicted)  Data merged from RGD:1311110 737654 APPROVED
2005-01-20 Dnah1  dynein, axonemal, heavy polypeptide 1      Symbol and Name status set to approved 1299863 APPROVED
2005-01-20 RGD1311110_predicted  similar to KIAA1410 protein (predicted)  LOC306258_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306258_predicted  similar to KIAA1410 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-08-07 Dnah1  dynein, axonemal, heavy polypeptide 1      Symbol and Name status set to provisional 70820 PROVISIONAL