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Gene: Rassf5 (Ras association domain family member 5) Rattus norvegicus

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Symbol:

Rassf5

Name:

Ras association domain family member 5

RGD ID:

621694

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within negative regulation of lymphocyte proliferation; positive regulation of protein ubiquitination; and regulation of protein localization to nucleus. Predicted to be located in cytoplasm and microtubule. Predicted to be active in nucleus. Orthologous to human RASSF5 (Ras association domain family member 5); PARTICIPATES IN non-small cell lung carcinoma pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Maxp1; new ras effector 1; Nore1; novel ras effector 1; protein interacting with guanine nucleotide exchange factor; Ras association (RalGDS/AF-6) domain family 5; Ras association (RalGDS/AF-6) domain family member 5; ras association domain-containing protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,189,768 - 45,255,277 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	45,189,804 - 45,255,277 (-)	Ensembl				GRCr8
mRatBN7.2	13	42,637,513 - 42,703,024 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	42,637,549 - 42,703,024 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	45,244,277 - 45,311,065 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	46,532,408 - 46,599,197 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	43,796,450 - 43,862,915 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	47,956,754 - 48,022,333 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	47,956,790 - 48,022,333 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,032,680 - 53,098,045 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,121,863 - 44,188,493 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	42,983,422 - 43,048,730 (-)	NCBI		Celera
RGSC_v3.1	13	44,135,904 - 44,202,536 (-)	NCBI
RH 3.4 Map	13	201.8	RGD
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Kidney Neoplasms (ISO)

lung non-small cell carcinoma (ISO)

neuroblastoma (ISO)

systemic lupus erythematosus (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (EXP,ISO)

cobalt dichloride (ISO)

crocidolite asbestos (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

DDE (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

gentamycin (EXP)

glycitein (ISO)

glycitin (ISO)

glyphosate (EXP)

hemin (ISO)

hydroquinone (ISO)

ketamine (EXP)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

methylmercury(1+) (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

ochratoxin A (ISO)

okadaic acid (ISO)

ozone (ISO)

perfluorohexanesulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

progesterone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (ISO)

Tributyltin oxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

negative regulation of cell population proliferation (ISO)

positive regulation of protein ubiquitination (ISO)

regulation of protein localization to nucleus (ISO)

signal transduction (IBA,IEA)

Cellular Component

cytoplasm (IEA)

cytoskeleton (IEA)

microtubule (IEA)

nucleus (IBA,IEA,ISO)

Molecular Function

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

non-small cell lung carcinoma pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Information Derived from GenBank Report	RGD, Sept. 2003
10.	Suppression of hydroxyurea-induced centrosome amplification by NORE1A and down-regulation of NORE1A mRNA expression in non-small cell lung carcinoma.	Shinmura K, etal., Lung Cancer. 2011 Jan;71(1):19-27. doi: 10.1016/j.lungcan.2010.04.006.
11.	The pro-apoptotic Ras effector Nore1 may serve as a Ras-regulated tumor suppressor in the lung.	Vos MD, etal., J Biol Chem 2003 Jun 13;278(24):21938-43. Epub 2003 Apr 3.

Additional References at PubMed

PMID:11978988	PMID:17517604	PMID:21194982	PMID:21938476	PMID:22173032	PMID:24165023

Genomics

Comparative Map Data

Rassf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,189,768 - 45,255,277 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	45,189,804 - 45,255,277 (-)	Ensembl				GRCr8
mRatBN7.2	13	42,637,513 - 42,703,024 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	42,637,549 - 42,703,024 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	45,244,277 - 45,311,065 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	46,532,408 - 46,599,197 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	43,796,450 - 43,862,915 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	47,956,754 - 48,022,333 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	47,956,790 - 48,022,333 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,032,680 - 53,098,045 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,121,863 - 44,188,493 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	42,983,422 - 43,048,730 (-)	NCBI		Celera
RGSC_v3.1	13	44,135,904 - 44,202,536 (-)	NCBI
RH 3.4 Map	13	201.8	RGD
Cytogenetic Map	13	q13	NCBI

RASSF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	206,507,531 - 206,589,448 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	206,507,531 - 206,589,448 (+)	Ensembl			hg38	GRCh38
GRCh37	1	206,680,864 - 206,762,780 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	204,747,502 - 204,829,239 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	179,932,333 - 180,014,065 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	177,379,199 - 177,460,931 (+)	NCBI		HuRef
CHM1_1	1	207,953,085 - 208,034,823 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	205,771,712 - 205,853,623 (+)	NCBI		T2T-CHM13v2.0

Rassf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,104,147 - 131,172,915 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,104,147 - 131,172,995 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	131,176,410 - 131,245,178 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	131,176,410 - 131,245,258 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	133,072,987 - 133,141,755 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,003,956 - 133,072,724 (-)	NCBI		MGSCv36	mm8
Celera	1	133,798,687 - 133,867,483 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	56.91	NCBI

Rassf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	42,086,081 - 42,159,204 (+)	Ensembl
ChiLan1.0	NW_004955406	42,086,081 - 42,159,204 (+)	NCBI	ChiLan1.0	ChiLan1.0

RASSF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	42,787,046 - 42,871,019 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	42,752,573 - 42,836,547 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	182,107,396 - 182,191,346 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	186,388,571 - 186,471,134 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	186,388,571 - 186,471,134 (+)	Ensembl			panPan2	panpan1.1

RASSF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,783,049 - 2,849,188 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	2,783,122 - 2,847,909 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,873,999 - 2,941,303 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,779,187 - 2,846,485 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,779,211 - 2,846,483 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,772,433 - 2,839,712 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	3,165,827 - 3,232,690 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	3,366,000 - 3,433,252 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rassf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	68,748,273 - 68,815,134 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	5,988,554 - 6,045,274 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	5,988,578 - 6,014,214 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RASSF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	67,157,167 - 67,237,365 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	67,157,167 - 67,237,366 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	73,576,896 - 73,590,604 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RASSF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	22,775,917 - 22,854,739 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	22,774,661 - 22,807,353 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	23,474,267 - 23,553,128 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rassf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	4,837,730 - 4,905,711 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	4,837,106 - 4,905,717 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rassf5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	4,567,552 - 4,631,853 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rassf5
488 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	781
Count of miRNA genes:	289
Interacting mature miRNAs:	368
Transcripts:	ENSRNOT00000008055
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH134607

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,637,598 - 42,637,750 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	47,956,840 - 47,956,991	NCBI	Rnor6.0
Rnor_5.0	13	53,032,766 - 53,032,917	UniSTS	Rnor5.0
RGSC_v3.4	13	44,121,912 - 44,122,063	UniSTS	RGSC3.4
Celera	13	42,983,471 - 42,983,622	UniSTS
Cytogenetic Map	13	q13	UniSTS

RH142382

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,639,455 - 42,639,611 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	47,958,697 - 47,958,852	NCBI	Rnor6.0
Rnor_5.0	13	53,034,623 - 53,034,778	UniSTS	Rnor5.0
RGSC_v3.4	13	44,124,274 - 44,124,429	UniSTS	RGSC3.4
Celera	13	42,985,328 - 42,985,483	UniSTS
RH 3.4 Map	13	201.8	UniSTS
Cytogenetic Map	13	q13	UniSTS

Nore1-pending

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,638,121 - 42,638,252 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	47,957,363 - 47,957,493	NCBI	Rnor6.0
Rnor_5.0	13	53,033,289 - 53,033,419	UniSTS	Rnor5.0
RGSC_v3.4	13	44,122,435 - 44,122,565	UniSTS	RGSC3.4
Celera	13	42,983,994 - 42,984,124	UniSTS
Cytogenetic Map	13	q13	UniSTS

BF386245

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,637,335 - 42,637,508 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	47,956,577 - 47,956,749	NCBI	Rnor6.0
Rnor_5.0	13	53,032,503 - 53,032,675	UniSTS	Rnor5.0
RGSC_v3.4	13	44,121,649 - 44,121,821	UniSTS	RGSC3.4
Celera	13	42,983,208 - 42,983,380	UniSTS
RH 3.4 Map	13	110.8	UniSTS
Cytogenetic Map	13	q13	UniSTS

BE120661

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	45,210,940 - 45,211,133 (+)	Marker Load Pipeline
mRatBN7.2	13	42,658,685 - 42,658,878 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	47,977,927 - 47,978,119	NCBI	Rnor6.0
Rnor_5.0	13	53,053,851 - 53,054,043	UniSTS	Rnor5.0
RGSC_v3.4	13	44,143,504 - 44,143,696	UniSTS	RGSC3.4
Celera	13	43,004,558 - 43,004,750	UniSTS
RH 3.4 Map	13	110.1	UniSTS
Cytogenetic Map	13	q13	UniSTS

AU046422

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,655,218 - 42,655,438 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	47,974,460 - 47,974,679	NCBI	Rnor6.0
Rnor_5.0	13	53,050,384 - 53,050,603	UniSTS	Rnor5.0
RGSC_v3.4	13	44,140,037 - 44,140,256	UniSTS	RGSC3.4
Celera	13	43,001,091 - 43,001,310	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF002251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008055 ⟹ ENSRNOP00000008055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	45,189,804 - 45,255,277 (-)	Ensembl
mRatBN7.2 Ensembl	13	42,637,549 - 42,703,024 (-)	Ensembl
Rnor_6.0 Ensembl	13	47,956,790 - 48,022,333 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080035 ⟹ ENSRNOP00000070574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	45,189,804 - 45,212,758 (-)	Ensembl
mRatBN7.2 Ensembl	13	42,637,549 - 42,660,592 (-)	Ensembl
Rnor_6.0 Ensembl	13	47,958,645 - 47,979,797 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095675 ⟹ ENSRNOP00000077087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	45,189,804 - 45,243,337 (-)	Ensembl
mRatBN7.2 Ensembl	13	42,637,549 - 42,691,082 (-)	Ensembl

RefSeq Acc Id:

NM_019365 ⟹ NP_062238

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,189,805 - 45,255,277 (-)	NCBI
mRatBN7.2	13	42,637,550 - 42,703,024 (-)	NCBI
Rnor_6.0	13	47,956,791 - 48,022,333 (-)	NCBI
Rnor_5.0	13	53,032,680 - 53,098,045 (-)	NCBI
RGSC_v3.4	13	44,121,863 - 44,188,493 (-)	RGD
Celera	13	42,983,422 - 43,048,730 (-)	RGD

Sequence:

show sequence

GCCTCTCCGTGGGCTCCGCCCCGCCCCGCCCCGCCCGCGGGCTGCGGGCCCTTTAAAAGCGCGC
TCGGCCGGAGCCGCCCCTTCTGTTGGTCAGGCTCTGGAGCTGCTGCCGCCTGCGGGCCTTGGCC
ATGGCGTCCCCGGCCATTGGGCAGCGTCCCTACCCGCTGCTGCTAGACCCCGAGCCGCCGCGGT
ATCTGCAGAGCCTGGGTGGCACCGAGCCGCCACCGCCCGCCCGGCCGCGTCGCTGTATCCCCAC
GGCCCTGATCTCCGCGTCCGGGGCGTCAGAGGGTCGCGGTAGCAGGAGGAATGCCCGGGGGGAC
CCGGAGCCCACGCCCCGGGACTGCCGACACGCTCGCCCTGTCCGGCCCGGTCTGCAGCAGAGAC
TGCGGCGGCGACCTGGGTCGCACCGACCCCGCGACGTGAGGAGCATCTTCGAGCAACCGCAGGA
TCCCCGCGTCTTAGCCGAGAGAGGAGAGGGACACCGTTTCGCGGAATTGGCGCTCCGGGGTGGC
CCGGGCTGGTGTGACCTGTGCGGACGAGAGGTGCTGCGGCAGGCGCTGCGCTGCGCTAATTGTA
AATTCACCTGCCACCCAGAGTGCCGCAGCCTGATCCAGCTGGACTGCAGACAGAAGGAGGGCCC
TGCCCTGGACAGACAGTCTCCAGAAAGCACCCTCACCCCAACCTTCAACAAGAATGTCTGTAAG
GCTGTGGAGGAGACACAGCACCCGCCCACCATACAGGAGATCAAGCAGAAGATTGACAGCTATA
ACAGCCGGGAGAAGCACTGCCTGGGCATGAAGTTGAGTGAAGATGGCACCTACACAGGTTTCAT
CAAAGTGCATTTGAAACTCCGCCGGCCAGTGACGGTGCCTGCTGGGATTCGGCCCCAGTCCATC
TATGATGCCATTAAGGAAGTGAACCCTGCAGCTACCACAGACAAGCGGACATCCTTCTACCTGC
CACTTGACGCCATCAAGCAGCTACACATTAGCAGCAGCACCACTGTCAGTGAGGTCATCCAGGG
GCTGCTCAAGAAATTCATGGTTGTGGACAACCCACAGAAGTTTGCCCTTTTTAAGCGGATACAC
AAAGATGGACAAGTGCTCTTCCAGAAACTCTCCATCGCTGACTGCCCTCTCTACCTTCGTCTGC
TCGCTGGTCCTGACACCGACGTGCTCAGCTTTGTGCTCAAGGAGAATGAAACCGGAGACGTAGA
GTGGGATGCCTTTTCCATTCCTGAACTCCAGAACTTCTTAACTATCCTGGAAAAAGAGGAGCAG
GACAAGATCCATCAACTGCAGAAGAAGTACAACAAATTCCGGCAGAAACTGGAGGAGGCCTTAC
GAGAGTCCCAAGGGAAGCCTGGGTAACCAGCTTACTTCCTGTCCTCTCAGTGCCCTCCAATTTA
TTTTGTTAATTATTTTGCAATGAACAGTTATTCTCAAGGCACCTCTGATGTGTCCACCTGTGCC
TGCCCAGCAGTTAACAGATGTGGCACAAAGTCTCTTCCACGAAGTGTCTGTGCAGGGTTTGATT
CCTGCTAACCCACCACACCATGGCTCTGGAGATTTTCCGTCTGGGATCAGAACTCCTGTGGAAT
GACCAGTATTTCCCCTGTTCAATCTGCTGGCTTTTCGGAAACCAAATGGTTGCCTCTCTGCTCA
CCAAACTCCAACCAATCACCAGCTGGCAAAAAGGAATGAAAGGTTTTAGAGCCTGGGTTTTTTC
TCTGGATTTAGTTCTGTTCCTTTTTCTTTTTTCTGCCACACAGAGTATATTTATGGGTCAAATG
TGGCATATTCATTTTAGCTAAGTCCTTGAAAGCAGGAAAATGCTCGTGAAAGGACTGTCGTCCT
TGCCCCCAAGGTGCCTCCTCTTCTCTTGTGCTAGACCCTCGGTCAGCCTGAGATTCCAGAAGCG
ACATCTCTCACTGCCCAGCAGGCCGCATGCTGCAAACACAGACACACACACACACATCTGTGTG
GGACTTCGGCATGTCTCTTCCAGTGTTGCTATGCTGAAATCTTAACTTAATGTTGCCATTCTTA
TGGGTTTCTACCAAAGAGAAACCAGCCATTGACTTATCAATTTTAGTTTCCTGCTGAGTCGCCA
GAAGTATTACAGCAAAGCACATCCAAGCCGCTCGTGGCCTGTGCCTGCAGTGGGGGCCTCTCCT
TGGCCTTCAGTTCCACCTCCGTCCTCCAACTTGGGCTTTAGGGTCTCCAGCTGTTGCCTGAGTA
GTAGCTTTGATTACAGTGGTAAGGTCCTCCAACTTGGGAGTCCTTTCTGGTGGGAAGCATGGTC
TGCTCACACAGCATGGGCAAACCTGTGGGCCTGACTTTCCTGGTGACTTCAGTGCCTTTTTGTT
TTCAGAGAAAAGAGCAGGGCATGTTTGCTTGTAGCTCTCCTGCTGGCTTGCCCCAGCAGGAAGT
AGGTGCTATAGAGCAAGGACAGGAGGTTTCTCAGAGCACAGGGCGACGATCACACACCTCTTTC
CCATCAAGCTTCCTGATCAGGCTTTGACTTTGAAGATTCGAAATTATTAGACTGCACTGACAGC
ATCAGATTAGGACTCCAACTCTTGACTAATTCAAACTTAAAACAAATTAGCCAGACTATACCAC
CCAGTAGCCAGGACACAAAGACGCTCAATACGGAGGGAGAAAAACTTGTCCTTTTAGAAGAAGG
CCAGTGTTCCAATCGAGCCTCCAGAGGAGACCGCTCTCATGTTGTGCTTGCCTTTCCACACCCC
TCGGGTTGTTTTAAGCCCAAGCTTCTCTGTGTAGCCTAAAAAGTTCCCTCCCAGCCCAGGCTGA
GGCCACATTGCTCCTGTCCCAGAAGAATGCCAAATCCCTGTCATTCCAAGTTTTCAGAGCTGCA
AAAGCACCATGAGCTAGCGACTCTGAGGCTGTGCATGCCATAGCCCCTGGCTCCCTGCCGCCTC
AGGCTCAGCCTTACACTCCCCTCCCTTGAGAAGTCCCCTTTCTGCTGTGTATTACAGGGACATA
CGGAAACTCATTCCCTTCATCCTGCATGTGTGTAGCATTAGGAGAAGGCATGGCTCCTGCTGCA
AACACTGTGAATGCTGCTCAGACCTCCCTCCATGGATGGCTATTTTATTTTTGAACAAGAAAAA
AAATTCATGTATATATAAAATGTATATACATATATATGTATATACACATAGAGGCATATAGCTA
TATATAAAGAAAAGGTGTTTATTCAGAAAGGGATGATCAGATTCAGACTTTAAAGCACAGTTAG
ACCCGGGACCTCTACTGAGGTTGAGCCGCTGGAAACGTGGAGTTCCTTAAGTCTCAGAGGGGTC
TAACTGCTGGTAGTGCCTTCTATGGTTGTATGGCTCTGTGGTTGGTTGTTTTGAGAATATTTTC
TTTCTAAATGTTTTTCTTATACATGGTTTTTT

hide sequence

RefSeq Acc Id:

XM_008769494 ⟹ XP_008767716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,189,768 - 45,212,835 (-)	NCBI
mRatBN7.2	13	42,637,513 - 42,660,547 (-)	NCBI
Rnor_6.0	13	47,956,754 - 47,979,789 (-)	NCBI

Sequence:

show sequence

GGGGGCGGGGAGCCAGCAGGCAGGCACAATGCTCAACACTGCAGGCGCTAGAGAACAAGGTGCG
TGGACCCCGGGGCCCCAAGCTGTGCAGGCGCTTGAAACCCCAATGAAGGAAGCACGGACTGCCT
GCCTGAGAGCAGCCTGGTAACCCACTAGAACCCGCACCTGAGCCAGAACCCGAAGGGCCCCTCG
AGCAGCCCCTGCCCCGCAGCAGTCCGATGAGCTCAGACTCGGGCGGGGCCCAATGACCGTAGAC
AGCAGCATGAGCAGCGGGTACTGCAGCCTGGATGAGGAACTGGAAGATTGCTTCTTTACGGCTA
AGACCACCTTTTTCAGGAATGTTCAGAGCAAACACTCTTCAAAGAATGTCTGTAAGGCTGTGGA
GGAGACACAGCACCCGCCCACCATACAGGAGATCAAGCAGAAGATTGACAGCTATAACAGCCGG
GAGAAGCACTGCCTGGGCATGAAGTTGAGTGAAGATGGCACCTACACAGGTTTCATCAAAGTGC
ATTTGAAACTCCGCCGGCCAGTGACGGTGCCTGCTGGGATTCGGCCCCAGTCCATCTATGATGC
CATTAAGGAAGTGAACCCTGCAGCTACCACAGACAAGCGGACATCCTTCTACCTGCCACTTGAC
GCCATCAAGCAGCTACACATTAGCAGCAGCACCACTGTCAGTGAGGTCATCCAGGGGCTGCTCA
AGAAATTCATGGTTGTGGACAACCCACAGAAGTTTGCCCTTTTTAAGCGGATACACAAAGATGG
ACAAGTGCTCTTCCAGAAACTCTCCATCGCTGACTGCCCTCTCTACCTTCGTCTGCTCGCTGGT
CCTGACACCGACGTGCTCAGCTTTGTGCTCAAGGAGAATGAAACCGGAGACGTAGAGTGGGATG
CCTTTTCCATTCCTGAACTCCAGAACTTCTTAACTATCCTGGAAAAAGAGGAGCAGGACAAGAT
CCATCAACTGCAGAAGAAGTACAACAAATTCCGGCAGAAACTGGAGGAGGCCTTACGAGAGTCC
CAAGGGAAGCCTGGGTAACCAGCTTACTTCCTGTCCTCTCAGTGCCCTCCAATTTATTTTGTTA
ATTATTTTGCAATGAACAGTTATTCTCAAGGCACCTCTGATGTGTCCACCTGTGCCTGCCCAGC
AGTTAACAGATGTGGCACAAAGTCTCTTCCACGAAGTGTCTGTGCAGGGTTTGATTCCTGCTAA
CCCACCACACCATGGCTCTGGAGATTTTCCGTCTGGGATCAGAACTCCTGTGGAATGACCAGTA
TTTCCCCTGTTCAATCTGCTGGCTTTTCGGAAACCAAATGGTTGCCTCTCTGCTCACCAAACTC
CAACCAATCACCAGCTGGCAAAAAGGAATGAAAGGTTTTAGAGCCTGGGTTTTTTCTCTGGATT
TAGTTCTGTTCCTTTTTCTTTTTTCTGCCACACAGAGTATATTTATGGGTCAAATGTGGCATAT
TCATTTTAGCTAAGTCCTTGAAAGCAGGAAAATGCTCGTGAAAGGACTGTCGTCCTTGCCCCCA
AGGTGCCTCCTCTTCTCTTGTGCTAGACCCTCGGTCAGCCTGAGATTCCAGAAGCGACATCTCT
CACTGCCCAGCAGGCCGCATGCTGCAAACACAGACACACACACACACATCTGTGTGGGACTTCG
GCATGTCTCTTCCAGTGTTGCTATGCTGAAATCTTAACTTAATGTTGCCATTCTTATGGGTTTC
TACCAAAGAGAAACCAGCCATTGACTTATCAATTTTAGTTTCCTGCTGAGTCGCCAGAAGTATT
ACAGCAAAGCACATCCAAGCCGCTCGTGGCCTGTGCCTGCAGTGGGGGCCTCTCCTTGGCCTTC
AGTTCCACCTCCGTCCTCCAACTTGGGCTTTAGGGTCTCCAGCTGTTGCCTGAGTAGTAGCTTT
GATTACAGTGGTAAGGTCCTCCAACTTGGGAGTCCTTTCTGGTGGGAAGCATGGTCTGCTCACA
CAGCATGGGCAAACCTGTGGGCCTGACTTTCCTGGTGACTTCAGTGCCTTTTTGTTTTCAGAGA
AAAGAGCAGGGCATGTTTGCTTGTAGCTCTCCTGCTGGCTTGCCCCAGCAGGAAGTAGGTGCTA
TAGAGCAAGGACAGGAGGTTTCTCAGAGCACAGGGCGACGATCACACACCTCTTTCCCATCAAA
CTTCCTGATCAGGCTTTGACTTTGAAGATTCGAAATTATTAGACTGCACTGACAGCATCAGATT
AGGACTCCAACTCTTGACTAATTCAAACTTAAAACAAATTAGCCAGACTATACCACCCAGTAGC
CAGGACACAAAGACGCTCAATATGGAGGGAGAAAAACTTGTCCTTTTAGAAGAAGGCCAGTGTT
CCAATCGAGCCTCCAGAGGAGACCGCTTTCATGTTGTGCTTGCCTTTCCACACCCCTCGGGTTG
TTTTAAGCCCAAGCTTCTCTGTGTAGCCTAAAAAGTTCCCTCCCAGCCCAGGCTGAGGCCACAT
TGCTCCTGTCCCAGAAGAATGCCAAATCCCTGTCATTCCAAGTTTTCAGAGCTGCAAAAGCACC
ATGAGCTAGCGACTCTGAGGCTGTGCATGCCATAGCCCCTGGCTCCCTGCCGCCTCAGGCTCAG
CCTTACACTCCCCTCCCTTGAGAAGTCCCCTTTCTGCTGTGTATTACAGGGACATACGGAAACT
CATTCCCTTCATCCTGCATGTGTGTAGCATTAGGAGAAGGCATGGCTCCTGCTGCAAACACTGT
GAATGCTGCTCAGACCTCCCTCCATGGATGGCTATTTTATTTTTGACAAGAAAAAAAATTCATG
TATATATAAAATGTATATACATATATATGTATATACACATAGAGGCATATAGCTATATATAAAG
AAAAGGTGTTTATTCAGAAAGGGATGATCAGATTCAGACTTTAAAGCACAGTTAGACCCAGGAC
CTCTACTGAGGTTGAGCCGCTGGAAACGTGGAGTTCCTTAAGTCTCAGAGGGGTCTAACTGCTG
GTAGTGCCTTCTATGGTTGTATGGCTCTGTGGTTGGTTGTTTTGAGAATATTTTCTTTCTAAAT
GTTTTTCTTATACATGGTTTTTTTTTTTAAATGAGTAATAAAAGCTTACTGTAAAAACAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_062238	(Get FASTA)	NCBI Sequence Viewer
	XP_008767716	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB71821	(Get FASTA)	NCBI Sequence Viewer
	EDM09831	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008055
	ENSRNOP00000008055.3
	ENSRNOP00000070574
GenBank Protein	O35141	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_062238 ⟸ NM_019365

- UniProtKB:

O35141 (UniProtKB/Swiss-Prot), A6IC16 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPAIGQRPYPLLLDPEPPRYLQSLGGTEPPPPARPRRCIPTALISASGASEGRGSRRNARGD
PEPTPRDCRHARPVRPGLQQRLRRRPGSHRPRDVRSIFEQPQDPRVLAERGEGHRFAELALRGG
PGWCDLCGREVLRQALRCANCKFTCHPECRSLIQLDCRQKEGPALDRQSPESTLTPTFNKNVCK
AVEETQHPPTIQEIKQKIDSYNSREKHCLGMKLSEDGTYTGFIKVHLKLRRPVTVPAGIRPQSI
YDAIKEVNPAATTDKRTSFYLPLDAIKQLHISSSTTVSEVIQGLLKKFMVVDNPQKFALFKRIH
KDGQVLFQKLSIADCPLYLRLLAGPDTDVLSFVLKENETGDVEWDAFSIPELQNFLTILEKEEQ
DKIHQLQKKYNKFRQKLEEALRESQGKPG

hide sequence

RefSeq Acc Id:	XP_008767716 ⟸ XM_008769494
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JY99 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVDSSMSSGYCSLDEELEDCFFTAKTTFFRNVQSKHSSKNVCKAVEETQHPPTIQEIKQKIDS YNSREKHCLGMKLSEDGTYTGFIKVHLKLRRPVTVPAGIRPQSIYDAIKEVNPAATTDKRTSFY LPLDAIKQLHISSSTTVSEVIQGLLKKFMVVDNPQKFALFKRIHKDGQVLFQKLSIADCPLYLR LLAGPDTDVLSFVLKENETGDVEWDAFSIPELQNFLTILEKEEQDKIHQLQKKYNKFRQKLEEA LRESQGKPG hide sequence

Ensembl Acc Id:

ENSRNOP00000070574 ⟸ ENSRNOT00000080035

Ensembl Acc Id:

ENSRNOP00000008055 ⟸ ENSRNOT00000008055

Ensembl Acc Id:

ENSRNOP00000077087 ⟸ ENSRNOT00000095675

Protein Domains

Phorbol-ester/DAG-type Ras-associating SARAH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35141-F1-model_v2	AlphaFold	O35141	1-413	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698794

Promoter ID:

EPDNEW_R9319

Type:

single initiation site

Name:

Rassf5_1

Description:

Ras association domain family member 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,022,250 - 48,022,310	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621694	AgrOrtholog
BioCyc Gene	G2FUF-18354	BioCyc
Ensembl Genes	ENSRNOG00000005342	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008055	ENTREZGENE
	ENSRNOT00000008055.6	UniProtKB/Swiss-Prot
	ENSRNOT00000080035	ENTREZGENE
Gene3D-CATH	1.20.5.110	UniProtKB/Swiss-Prot
	3.30.60.20	UniProtKB/Swiss-Prot
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/Swiss-Prot
InterPro	C-RASSF	UniProtKB/Swiss-Prot
	C1-like_sf	UniProtKB/Swiss-Prot
	PE/DAG-bd	UniProtKB/Swiss-Prot
	RA_dom	UniProtKB/Swiss-Prot
	RASSF5	UniProtKB/Swiss-Prot
	SARAH_dom	UniProtKB/Swiss-Prot
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot
KEGG Report	rno:54355	UniProtKB/Swiss-Prot
NCBI Gene	54355	ENTREZGENE
PANTHER	PTHR22738	UniProtKB/Swiss-Prot
	PTHR22738:SF9	UniProtKB/Swiss-Prot
Pfam	C1_1	UniProtKB/Swiss-Prot
	Nore1-SARAH	UniProtKB/Swiss-Prot
	PF00788	UniProtKB/Swiss-Prot
PhenoGen	Rassf5	PhenoGen
PROSITE	PS50200	UniProtKB/Swiss-Prot
	SARAH	UniProtKB/Swiss-Prot
	ZF_DAG_PE_1	UniProtKB/Swiss-Prot
	ZF_DAG_PE_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005342	RatGTEx
SMART	SM00109	UniProtKB/Swiss-Prot
	SM00314	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54236	UniProtKB/Swiss-Prot
	SSF57889	UniProtKB/Swiss-Prot
UniProt	A0A0G2JY99	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y5W8_RAT	UniProtKB/TrEMBL
	A6IC16	ENTREZGENE, UniProtKB/TrEMBL
	O35141	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-03	Rassf5	Ras association domain family member 5	Rassf5	Ras association (RalGDS/AF-6) domain family member 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-25	Rassf5	Ras association (RalGDS/AF-6) domain family member 5	Rassf5	Ras association (RalGDS/AF-6) domain family 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rassf5	Ras association (RalGDS/AF-6) domain family 5	Maxp1	protein interacting with guanine nucleotide exchange factor	Symbol and Name updated	1299863	APPROVED
2002-08-07	Maxp1	protein interacting with guanine nucleotide exchange factor			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - KEGG (archival)