Kcnj13 (potassium inwardly-rectifying channel, subfamily J, member 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Kcnj13 (potassium inwardly-rectifying channel, subfamily J, member 13) Rattus norvegicus
Analyze
Symbol: Kcnj13
Name: potassium inwardly-rectifying channel, subfamily J, member 13
RGD ID: 621661
Description: Predicted to enable potassium channel activity. Predicted to contribute to inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of membrane potential. Predicted to be located in membrane. Predicted to be part of monoatomic ion channel complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 16 and snowflake vitreoretinal degeneration. Orthologous to human KCNJ13 (potassium inwardly rectifying channel subfamily J member 13); INTERACTS WITH ammonium chloride; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inward rectifier K(+) channel Kir7.1; inward rectifier potassium channel 13; Kir7.1; potassium channel, inwardly rectifying subfamily J member 13; potassium channel, inwardly rectifying subfamily J, member 13; potassium inwardly-rectifying channel,subfamily J, member 13; potassium voltage-gated channel subfamily J member 13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Kcnj13em1Mcwi
Genetic Models: SS-Kcnj13em1Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,509,228 - 95,528,400 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl995,510,877 - 95,520,817 (-)EnsemblGRCr8
mRatBN7.2988,063,003 - 88,071,112 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,063,003 - 88,071,112 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx996,487,431 - 96,495,537 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,623,514 - 101,631,620 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,991,249 - 99,999,358 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd999,129,078 - 99,137,176 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive994,978,975 - 94,987,073 (-)NCBILyon_Normotensive
Lyon_Hypertensive995,103,182 - 95,111,280 (-)NCBILyon_Hypertensive
F344_StmMcwi997,093,958 - 97,102,056 (-)NCBIF344_StmMcwi
Rnor_6.0994,486,719 - 94,495,333 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,487,224 - 94,495,333 (-)Ensemblrn6Rnor6.0
Rnor_5.0994,208,941 - 94,224,828 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4986,206,927 - 86,216,659 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera985,473,896 - 85,482,003 (-)NCBICelera
RGSC_v3.1986,390,345 - 86,400,078 (-)NCBI
Cytogenetic Map9q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The epithelial inward rectifier channel Kir7.1 displays unusual K+ permeation properties. Doring F, etal., J Neurosci 1998 Nov 1;18(21):8625-36.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Inwardly rectifying K+ channel Kir7.1 is highly expressed in thyroid follicular cells, intestinal epithelial cells and choroid plexus epithelial cells: implication for a functional coupling with Na+,K+-ATPase. Nakamura N, etal., Biochem J 1999 Sep 1;342 ( Pt 2):329-36.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10871613   PMID:11042260   PMID:12631077   PMID:15775962   PMID:16406822   PMID:23255580   PMID:26402555   PMID:37318990  


Genomics

Comparative Map Data
Kcnj13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,509,228 - 95,528,400 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl995,510,877 - 95,520,817 (-)EnsemblGRCr8
mRatBN7.2988,063,003 - 88,071,112 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,063,003 - 88,071,112 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx996,487,431 - 96,495,537 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,623,514 - 101,631,620 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,991,249 - 99,999,358 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd999,129,078 - 99,137,176 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive994,978,975 - 94,987,073 (-)NCBILyon_Normotensive
Lyon_Hypertensive995,103,182 - 95,111,280 (-)NCBILyon_Hypertensive
F344_StmMcwi997,093,958 - 97,102,056 (-)NCBIF344_StmMcwi
Rnor_6.0994,486,719 - 94,495,333 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,487,224 - 94,495,333 (-)Ensemblrn6Rnor6.0
Rnor_5.0994,208,941 - 94,224,828 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4986,206,927 - 86,216,659 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera985,473,896 - 85,482,003 (-)NCBICelera
RGSC_v3.1986,390,345 - 86,400,078 (-)NCBI
Cytogenetic Map9q35NCBI
KCNJ13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,765,802 - 232,776,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2232,765,802 - 232,776,565 (-)Ensemblhg38GRCh38
GRCh372233,630,512 - 233,641,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,339,104 - 233,349,519 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342233,456,678 - 233,466,780NCBI
Celera2227,394,843 - 227,405,607 (-)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2225,479,819 - 225,490,582 (-)NCBIHuRef
CHM1_12233,636,578 - 233,647,341 (-)NCBICHM1_1
T2T-CHM13v2.02233,252,565 - 233,263,328 (-)NCBIT2T-CHM13v2.0
Kcnj13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,312,299 - 87,322,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,314,085 - 87,322,451 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38187,384,577 - 87,394,729 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,386,363 - 87,394,729 (-)Ensemblmm10GRCm38
MGSCv37189,282,859 - 89,291,304 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36189,282,859 - 89,291,304 (-)NCBIMGSCv36mm8
Celera190,359,331 - 90,367,770 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.3NCBI
Kcnj13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554533,249,602 - 3,269,394 (+)Ensembl
ChiLan1.0NW_0049554533,259,924 - 3,269,394 (+)NCBIChiLan1.0ChiLan1.0
KCNJ13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,373,985 - 135,392,916 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,388,950 - 135,399,243 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B119,997,643 - 120,009,927 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B238,915,393 - 238,926,178 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B238,916,083 - 238,926,178 (-)EnsemblpanPan2panpan1.1
KCNJ13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,377,848 - 44,388,537 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,379,635 - 44,387,993 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2544,873,627 - 44,882,386 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02544,636,927 - 44,645,691 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2544,637,261 - 44,645,628 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12544,562,301 - 44,571,052 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,408,250 - 44,417,014 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02544,563,331 - 44,572,089 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kcnj13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,565,589 - 186,577,340 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365254,362,376 - 4,374,414 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365254,361,755 - 4,374,130 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNJ13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,237,960 - 133,249,400 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115133,239,843 - 133,249,630 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,163,959 - 147,173,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNJ13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110118,791,496 - 118,803,212 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10118,793,445 - 118,796,563 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604080,705,552 - 80,716,267 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnj13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,460,193 - 5,471,250 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248435,460,452 - 5,471,478 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Kcnj13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14159,518,435 - 159,526,557 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kcnj13
113 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:21
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000021507
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat


Genetic Models
This gene Kcnj13 is modified in the following models/strains:
SS-Kcnj13em1Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 11 34 161 51 50 19 76 19 6 253 140 9 142 73 75 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000021507   ⟹   ENSRNOP00000021507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,510,877 - 95,518,986 (-)Ensembl
mRatBN7.2 Ensembl988,063,003 - 88,071,112 (-)Ensembl
Rnor_6.0 Ensembl994,487,224 - 94,495,333 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137806   ⟹   ENSRNOP00000111051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,510,877 - 95,520,817 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153746   ⟹   ENSRNOP00000108185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,510,877 - 95,520,817 (-)Ensembl
RefSeq Acc Id: NM_053608   ⟹   NP_446060
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,510,877 - 95,518,986 (-)NCBI
mRatBN7.2988,063,003 - 88,071,112 (-)NCBI
Dahl_SR_JrHsd999,129,078 - 99,137,176 (-)NCBI
Lyon_Normotensive994,978,975 - 94,987,073 (-)NCBI
Lyon_Hypertensive995,103,182 - 95,111,280 (-)NCBI
F344_StmMcwi997,093,958 - 97,102,056 (-)NCBI
Rnor_6.0994,487,224 - 94,495,333 (-)NCBI
Rnor_5.0994,208,941 - 94,224,828 (-)NCBI
RGSC_v3.4986,206,927 - 86,216,659 (-)RGD
Celera985,473,896 - 85,482,003 (-)RGD
Sequence:
RefSeq Acc Id: XM_063267790   ⟹   XP_063123860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,509,228 - 95,524,828 (-)NCBI
RefSeq Acc Id: XM_063267791   ⟹   XP_063123861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,509,228 - 95,524,828 (-)NCBI
RefSeq Acc Id: XM_063267793   ⟹   XP_063123863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,509,228 - 95,528,400 (-)NCBI
RefSeq Acc Id: NP_446060   ⟸   NM_053608
- UniProtKB: O70617 (UniProtKB/Swiss-Prot),   A6JWM8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021507   ⟸   ENSRNOT00000021507
RefSeq Acc Id: XP_063123863   ⟸   XM_063267793
- Peptide Label: isoform X1
- UniProtKB: O70617 (UniProtKB/Swiss-Prot),   A6JWM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123860   ⟸   XM_063267790
- Peptide Label: isoform X1
- UniProtKB: O70617 (UniProtKB/Swiss-Prot),   A6JWM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123861   ⟸   XM_063267791
- Peptide Label: isoform X1
- UniProtKB: O70617 (UniProtKB/Swiss-Prot),   A6JWM8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111051   ⟸   ENSRNOT00000137806
Ensembl Acc Id: ENSRNOP00000108185   ⟸   ENSRNOT00000153746
Protein Domains
Inward rectifier potassium channel C-terminal   Potassium channel inwardly rectifying transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70617-F1-model_v2 AlphaFold O70617 1-360 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696837
Promoter ID:EPDNEW_R7360
Type:single initiation site
Name:Kcnj13_1
Description:potassium voltage-gated channel subfamily J member 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0994,495,349 - 94,495,409EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621661 AgrOrtholog
BioCyc Gene G2FUF-26842 BioCyc
Ensembl Genes ENSRNOG00000016057 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021507 ENTREZGENE
  ENSRNOT00000021507.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot
  2.60.40.1400 UniProtKB/Swiss-Prot
InterPro Ig_E-set UniProtKB/Swiss-Prot
  IRK_C UniProtKB/Swiss-Prot
  K_chnl_inward-rec_Kir UniProtKB/Swiss-Prot
  K_chnl_inward-rec_Kir_cyto UniProtKB/Swiss-Prot
  KCNJ13 UniProtKB/Swiss-Prot
  Kir_TM UniProtKB/Swiss-Prot
KEGG Report rno:94341 UniProtKB/Swiss-Prot
NCBI Gene 94341 ENTREZGENE
PANTHER PTHR11767 UniProtKB/Swiss-Prot
  PTHR11767:SF3 UniProtKB/Swiss-Prot
Pfam IRK UniProtKB/Swiss-Prot
  IRK_C UniProtKB/Swiss-Prot
PhenoGen Kcnj13 PhenoGen
PIRSF GIRK_kir UniProtKB/Swiss-Prot
PRINTS KIR7CHANNEL UniProtKB/Swiss-Prot
  KIRCHANNEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016057 RatGTEx
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot
  Voltage-gated potassium channels UniProtKB/Swiss-Prot
UniProt A0ABK0LQL1_RAT UniProtKB/TrEMBL
  A0ABK0M773_RAT UniProtKB/TrEMBL
  A6JWM8 ENTREZGENE, UniProtKB/TrEMBL
  A6JWM9_RAT UniProtKB/TrEMBL
  KCJ13_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Kcnj13  potassium voltage-gated channel subfamily J member 13  Kcnj13  potassium channel, inwardly rectifying subfamily J, member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-26 Kcnj13  potassium channel, inwardly rectifying subfamily J, member 13  Kcnj13  potassium inwardly-rectifying channel, subfamily J, member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Kcnj13  potassium inwardly-rectifying channel, subfamily J, member 13    potassium inwardly-rectifying channel,subfamily J, member 13  Name updated 1299863 APPROVED
2002-08-07 Kcnj13  potassium inwardly-rectifying channel,subfamily J, member 13      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in thyroid, intestine and choroid plexus 727278