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Gene: Sec16b (SEC16 homolog B, endoplasmic reticulum export factor) Rattus norvegicus

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Symbol:

Sec16b

Name:

SEC16 homolog B, endoplasmic reticulum export factor

RGD ID:

621658

Description:

Predicted to be involved in several processes, including peroxisome fission; positive regulation of protein exit from endoplasmic reticulum; and protein localization to endoplasmic reticulum exit site. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in ER to Golgi transport vesicle membrane and endoplasmic reticulum exit site. Orthologous to human SEC16B (SEC16 homolog B, endoplasmic reticulum export factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leucine zipper transcription regulator 2; Lztr2; protein transport protein Sec16B; regucalcin gene promoter region related protein; regucalcin gene promoter region-related protein p117; RGPR; RGPR-p117; SEC16 homolog B; SEC16 homolog B (S. cerevisiae)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	72,206,778 - 72,260,733 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	72,206,772 - 72,260,729 (+)	Ensembl				GRCr8
mRatBN7.2	13	69,665,757 - 69,727,199 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	69,684,291 - 69,727,196 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	72,251,310 - 72,293,948 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	73,566,357 - 73,609,814 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	70,827,850 - 70,871,307 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	75,153,074 - 75,216,941 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	75,175,254 - 75,216,941 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	80,090,341 - 80,133,075 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	72,787,822 - 72,830,908 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	69,513,230 - 69,555,087 (+)	NCBI		Celera
RGSC_v3.1	13	72,802,009 - 72,845,095 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

BCARD syndrome (ISO)

Body Weight (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

allethrin (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

Benzo[ghi]perylene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dexamethasone (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fenvalerate (EXP)

flutamide (EXP)

GW 7647 (EXP,ISO)

indometacin (ISO)

iron dichloride (ISO)

methapyrilene (EXP)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

pirinixic acid (ISO)

pyrethrins (EXP)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichostatin A (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum organization (IBA,IEA,ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (IBA,IEA,ISO,ISS)

peroxisome fission (IEA,ISO)

peroxisome organization (IEA,ISO)

positive regulation of gene expression (IEA,ISO)

positive regulation of protein exit from endoplasmic reticulum (IEA,ISO)

protein localization to endoplasmic reticulum exit site (IBA)

protein transport (IEA)

vesicle-mediated transport (IEA)

Cellular Component

endoplasmic reticulum exit site (IBA,IEA,ISO,ISS)

endoplasmic reticulum membrane (IEA)

ER to Golgi transport vesicle membrane (IBA)

Golgi membrane (IEA)

Molecular Function

protein binding (ISO)

protein-membrane adaptor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Molecular cloning and sequencing of the cDNA coding for a novel regucalcin gene promoter region-related protein in rat, mouse and human liver.	Misawa H and Yamaguchi M, Int J Mol Med 2001 Nov;8(5):513-20.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Novel protein RGPR-p117: the gene expression in physiologic state and the binding activity to regucalcin gene promoter region in rat liver.	Yamaguchi M, etal., J Cell Biochem 2003 Apr 15;88(6):1092-100.

Additional References at PubMed

PMID:16211248	PMID:16273285	PMID:16676356	PMID:17549392	PMID:17786289	PMID:21478858	PMID:21768384	PMID:22355596	PMID:35835253

Genomics

Comparative Map Data

Sec16b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	72,206,778 - 72,260,733 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	72,206,772 - 72,260,729 (+)	Ensembl				GRCr8
mRatBN7.2	13	69,665,757 - 69,727,199 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	69,684,291 - 69,727,196 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	72,251,310 - 72,293,948 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	73,566,357 - 73,609,814 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	70,827,850 - 70,871,307 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	75,153,074 - 75,216,941 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	75,175,254 - 75,216,941 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	80,090,341 - 80,133,075 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	72,787,822 - 72,830,908 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	69,513,230 - 69,555,087 (+)	NCBI		Celera
RGSC_v3.1	13	72,802,009 - 72,845,095 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

SEC16B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	177,928,788 - 177,984,284 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	177,923,956 - 177,984,303 (-)	Ensembl			hg38	GRCh38
GRCh37	1	177,897,923 - 177,953,419 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	176,164,865 - 176,205,673 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	174,629,937 - 174,670,707	NCBI
Celera	1	151,007,141 - 151,047,948 (-)	NCBI		Celera
Cytogenetic Map	1	q25.2	NCBI
HuRef	1	149,125,532 - 149,166,504 (-)	NCBI		HuRef
CHM1_1	1	179,322,172 - 179,362,966 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	177,283,553 - 177,339,057 (-)	NCBI		T2T-CHM13v2.0

Sec16b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	157,334,303 - 157,395,995 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	157,334,298 - 157,395,995 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	157,506,733 - 157,568,425 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	157,506,728 - 157,568,425 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	159,436,927 - 159,498,556 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	159,343,487 - 159,405,102 (+)	NCBI		MGSCv36	mm8
MGSCv36	1	158,657,717 - 158,681,716 (+)	NCBI		MGSCv36	mm8
Celera	1	159,917,487 - 159,979,158 (+)	NCBI		Celera
Cytogenetic Map	1	H1	NCBI
cM Map	1	68.0	NCBI

Sec16b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	17,458,635 - 17,491,920 (-)	Ensembl
ChiLan1.0	NW_004955406	17,458,699 - 17,509,379 (-)	NCBI	ChiLan1.0	ChiLan1.0

SEC16B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	71,702,864 - 71,797,859 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	71,411,783 - 71,467,406 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	153,445,298 - 153,555,082 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	157,138,640 - 157,179,830 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	157,139,709 - 157,179,830 (-)	Ensembl			panPan2	panpan1.1

SEC16B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	21,683,310 - 21,739,914 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	21,698,411 - 21,738,954 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	21,210,066 - 21,266,406 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	21,423,323 - 21,479,479 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	21,423,398 - 21,479,465 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	21,329,712 - 21,386,297 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	21,437,354 - 21,493,768 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	21,573,233 - 21,629,637 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sec16b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	92,936,851 - 92,974,455 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	10,783,054 - 10,821,206 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	10,782,988 - 10,821,204 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEC16B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	119,778,664 - 119,842,922 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	119,778,660 - 119,842,962 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	131,339,683 - 131,349,982 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEC16B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	51,309,875 - 51,379,187 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	51,332,937 - 51,380,520 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	52,883,508 - 52,930,698 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sec16b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	4,238,976 - 4,274,582 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	4,200,427 - 4,274,020 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sec16b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	36,873,168 - 36,911,995 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sec16b
363 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	859
Count of miRNA genes:	281
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000007321, ENSRNOT00000044008
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

BE108065

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	69,705,536 - 69,705,704 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	75,195,888 - 75,196,055	NCBI	Rnor6.0
Rnor_5.0	13	80,112,253 - 80,112,420	UniSTS	Rnor5.0
RGSC_v3.4	13	72,808,979 - 72,809,146	UniSTS	RGSC3.4
Celera	13	69,533,628 - 69,533,795	UniSTS
RH 3.4 Map	13	411.4	UniSTS
Cytogenetic Map	13	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	157	91	90	59	71	59	6	335	171	11	136	81	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB060653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB178524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007321 ⟹ ENSRNOP00000007321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	75,177,965 - 75,216,933 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000044008 ⟹ ENSRNOP00000046286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	72,206,772 - 72,260,729 (+)	Ensembl
mRatBN7.2 Ensembl	13	69,684,291 - 69,727,196 (+)	Ensembl
Rnor_6.0 Ensembl	13	75,175,254 - 75,216,941 (+)	Ensembl

RefSeq Acc Id:

NM_053571 ⟹ NP_446023

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,217,833 - 72,260,733 (+)	NCBI
mRatBN7.2	13	69,684,291 - 69,727,199 (+)	NCBI
Rnor_6.0	13	75,175,254 - 75,216,941 (+)	NCBI
Rnor_5.0	13	80,090,341 - 80,133,075 (+)	NCBI
RGSC_v3.4	13	72,787,822 - 72,830,908 (+)	RGD
Celera	13	69,513,230 - 69,555,087 (+)	RGD

Sequence:

show sequence

AGAAAGCAGTCCTCAGCAGGTCCCTGGAGCAACGCTGAAGGAAGGTGGAGAGTCAGCAAAGCAG
GAAATTAAATAATTACATAACAACCTCAAGACCCAAAGGGGGAAAAAATCAAAGGGTCAGAGAT
GGAACTTTGGGTTCCTCAGACACAAGGAAGGACCACGGGACTATCAAGGGATGCAAATAGAAGA
CTTCAGAGTGGACATTATAGACCCCGTCCTCACCCTCAGTACAGCGGAGATAACTACCACCAAT
GGCAGGATGCCCACAAGAACTCAAAGCCACAGCAGGACCCCAGGGATGACCACCAACAGCCACA
CTATGTACCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGAGCTGACTACTTGAAAGGATCT
TATCCCAGTCACCCATACTCAAGGTCAGGCTACGAGGACCCCTATCAGAGCTACCACACTCCAA
CACCGAGGGATGAGTACGCTTATGGAAATTACTACTACCACGGGCATCCACAGCTGCCGCAAGG
AGAAAGAGTGGCAAGGCAAGGGAGTCCTTATATCTGGCATGAAGATCACAGAGACCAAAGGCAC
TTCAGTGAGCATCATTGGGAAAAGCACAACAGTACATTTGAAGCAAACAGTGACACCCAATTCC
AATTTACCAGTAAGAATCCATACAATGACAACCCTGCTTCCGCGTTTGGACTGGAGCAGCCTGG
GGAGTTCTTTCCAGAGAGTGGAGCCCAGAAACAAAAGCCATCGTTGACCAGCAAATCCAACCTT
CTCCGACAGCATGAGTCTGGGCTCAGCTCTAGTAGCTATGAGCTCAGTCAGTACATGACCGAGG
CCCCTGAGCAGTATGAACCTATGGTGTCAGCAACTTGGAGGCCTATTCAAGCTGATGACACCTC
AGCGACCGTTCCCAAGGCACCCATGAGGTTCTACGTTCCCCACGTGTCTGTGAGCTTTGGGCCA
GGAGGCCAGCTGATATGCGTGTCCCCCAACTCTCCTGCTGATGGACAAACGGCCCTTGTTGAAG
TGCACAGCATGGAGGTTATACTTAATGATTTTGAGGATCAAGAGGAGATGAGAGCTTTCCCAGG
GCCCCTCATCAGGGAGGACATACACAAGGTGGATATCATGACATTTTGTCAGAAGAAAGCAGCT
CAGTGTCTCAAATCTGAGACGCCAGGGAGCAGGGACTCAGCTCTGCTTTGGCAACTGCTGGTTC
TCCTTTGTCGACAGAATGGGTCCATGGTGGGGTCTGACATTGCCGAGCTGCTGATGCAAGACTG
CAAGAAGCTGGAGAAGTACAAGAGGCAGCCCCCTGTAGCCAACCTCATCAACCTGACTGACGAG
GACTGGCCGGTGCTGAGCTCTGGGACTCGCAACCTGCTCACTGGGGAGATTCCCCCCAATGTGG
ATACGCCTGCGCAGATCGTGGAGAAATTCACCAAGCTGCTCTACTATGGAAGGAAGAAGGAAGG
CCTTGGAATGGGCTATGAAGAACCACTTGTGGGGCCAATGCCTTGTTCCCTAGCCAGTAAGATG
GATCCAAGGACCTACAACTGGGTCATGAGTGGCTTCACCACTACGCTGGCGCTCAATGACCCTC
TGCAGACCCTCTTCCAGCTCATGTCAGGAAGGATTCCACAAGCAGCCACGTGTTGTGGAGACAA
ACAGTGGGGAGACTGGCGGCCCCATTTGGCTGTGATCCTGTCAAATCAGGCCGGAGACGCAGAG
TTGTACCAGCGAGCGATTGTCAGCATGGGGGACACCCTGGCTGGAAAAGGGCTTGTGGAGGCAT
CTCACTTCTGCTACCTCATGGCTCACGTGCCCTTCGGCCACTATACGGTGAAGACAGACCATCT
GGCCTTGGTGGGCAGTAACCACAGTCAAGAGTTTTTGAAATTTGCAACAATTGAGGCTATCCAG
CGGACGGAAATCTTCGAGTACTGCCAGATGCTGGGCCGCCCCAAATCCTTCATCCCGTCCTTCC
AGGTGTATAAGCTCCTTTATGCTTCCCGTCTGGCAGATTACGGCCTGGCATCCCAAGCCTTGCA
TTACTGTGAAGCCATTGGTGCAGCTGTCCTGAGCGAGGGAGGGAGCAGTCACCCCGTGCTATTA
GCGGAGCTCATCAAGCTTGCAGAGAAACTGAAGCTGTCGGATCCTCTGGTTTTAGAAAGCCGCC
GTGGGGACAGGGTCCTGGAACCGGATTGGCTTGTGCAACTGCGGAGGAAGCACAAGGAACTGGA
GCAAACTAGAACTGGAGACCTCAGAGATCCTGATCTGACTCCTTCAGATATTTATGGAGCCAGA
AGAACAACAGACACTCCCTACCGCGATCTTTATGGCCAGCAAAACTACTCAGAAGACTCTGAGT
ACAGCTCAGCCTTGTGGCCAACATCTGAGCAGACAAGCCTGACCAATCCCACCCCACAGCAGCC
TTTCCCCCTGCAGCGAGATACCTACTCAGAGAGAGATGGCCCAGTACACATGGGGACCCCAGTG
CCTCTTTACTCAGTTCCTGCAACCCACCTGACAGTGATTAGTGGCTCCAGTAGTGGCAGCGGTG
TGGCAGTGACAGGGGCTCCTGGAGGAAGGGTTGGAGAGGAGATGCTGCAGAAACATCCTGCCCT
TGGAGAGAACACAGTGCCTCAAGAAGCCGTGCAGGATCCTGATGGTCTAGCAGTCATTTCCAGT
CCTCAGACACCACTGGCTCCCAGGGATCGAAGTTTTTCTGAGGATTCTGCCATTTCAGCCAAGG
AGGATGAGGAGGGTTCTTCTGATGGAGCAGACAAACCACCTCACCCTGACGCTTCACAGAAAGA
AAAGCTGAGAGATGGGAAGAATACAAAGAGCTCTGGATTCGGCTGGTTCAGCTGGTTTCGATCA
AAGCCTGCCAGCAGTGTGTCCACCTCTGGAGATGAAGACTCTGTGGACAGTTCTGACTCAGAGG
AGTCTCCCAGAGCATCACCTCCTCACCATGCCAGCCTGGGCCTCTCACCAACACCTCCTCTCTC
ATCCCCATCTCTGCCAGGTGCCAGCACCTTCCCGAGAGGCACAGGTGGGAATAGTCTCCAGGGA
TCCTCAAACAGCAGTGGAATGGCTGAAGGCGTGGGGATTGGAGGGTTCTCGGGGCCACAGGGCG
TTTCTTCTGAGTTCTACTCCCAGCCTGGTGCCCTGCCTCCTCCACCTACCTTGCAAGGTGCTGT
TCCTCTCTACAATCCATCTCAGGTCCCTCAGCTTCCCACTGCTAGTAGCCTGAACCGGCCAAAC
CGCCTAGCCCAGCGCCGCTACCCAAGCCAACCATGCTGAGAGCGACCGTCTGTCCCAGGGCCAT
GAGGATGACCACCTACCCATCCTGGGCTCCTCTTCTGGAGCACAGCTTTCCTGTTGCTTTATAC
TTCTCAGTGTCACCTCACCTCGTCACGCTCAGGCCCGTGTCGTGAGCCTGCTGCACGGGCATAC
CTGGAGTTTGAGGACAGGATATCCTAGACAACAACTTGGTCCAGTCTTCAGCTTAGTTTGAGAG
TGATGGAAATTGTCTCATTAGACGGAGGAACGGGGGCCAATGTCTATGGTAGAGTGTCATGGCA
GCAGACTTGAGGTAGAAGCTTGAGCACCTCGGGAAAGCGAGGGCCCCGAGAATCCCGGGTGAAA
ACCGGAGATGACACTACCCGGCTGTACAGTAGGAGCTCAGAGCAATGTCCCAGAATAACTCAGA
CTCCCTCCATAGATCCGCTTAAAGACCAGTTTATGGCTCTTGTTAGTGAAGTTTTTACATTGAA
TTTGATTATCGCTGCCCTTCAGTGATTCCCTTTTCAATGACATTTCAGCAATTTTCCTCCTGGT
CCTAGTTTTGCGCACATTTTCTGTGTGGTTCAGACTAATTATATTTCTCTCACTTTCTTAGCCG
GTCCTATTTTTTTTCACATTCTGACATCTGGCTATCAAGTTAGATTGCTGTAGGCATTGTATTG
TCATGGTAACTACTGAACCTAATGATGCAGATGGAGGAACATCAGTATAATAAATAGTGGAAAA
CGTTTCCTAAGACGTCATCATTTCCATAAGAGGGGAGGGATGGGCGCTTCATATTGCTAATACC
TGCCTTCCTACCTCAGGCCTTTGCAAATCGATGTTCTGTGAGGGTCACCGGGGCCCCATGGAGG
AGAAAGCTGTCTTGGAAATTTCCATTTTTTCCTTTCAAACCTCAAATAGAAATGCTTCTTGCTG
TTTGTCAGATTTGCTTAAAATTGCTCGTCACAAAGAACATTTTTTGTATGTGTAATTGTACATA
AAAGTTTTGTACTTTAATGTACTATGGTTCTGATGTTGATAGCGATTAAATCCAGATAATTTTA
TAGCAAAAAAAAAAAAAAAAAAACTC

hide sequence

RefSeq Acc Id:

XM_039091144 ⟹ XP_038947072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,783 - 72,260,733 (+)	NCBI
mRatBN7.2	13	69,676,797 - 69,727,199 (+)	NCBI

RefSeq Acc Id:

XM_039091145 ⟹ XP_038947073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,216,578 - 72,260,733 (+)	NCBI
mRatBN7.2	13	69,684,217 - 69,727,199 (+)	NCBI

RefSeq Acc Id:

XM_039091147 ⟹ XP_038947075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,221,165 - 72,260,733 (+)	NCBI
mRatBN7.2	13	69,687,562 - 69,727,199 (+)	NCBI

RefSeq Acc Id:

XM_063272652 ⟹ XP_063128722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,778 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272653 ⟹ XP_063128723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,814 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272654 ⟹ XP_063128724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,814 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272655 ⟹ XP_063128725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,815 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272656 ⟹ XP_063128726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,214,744 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272657 ⟹ XP_063128727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,216,577 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272658 ⟹ XP_063128728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,778 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272659 ⟹ XP_063128729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,216,578 - 72,260,733 (+)	NCBI

RefSeq Acc Id:

XM_063272660 ⟹ XP_063128730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	72,206,778 - 72,249,798 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446023	(Get FASTA)	NCBI Sequence Viewer
	XP_038947072	(Get FASTA)	NCBI Sequence Viewer
	XP_038947073	(Get FASTA)	NCBI Sequence Viewer
	XP_038947075	(Get FASTA)	NCBI Sequence Viewer
	XP_063128722	(Get FASTA)	NCBI Sequence Viewer
	XP_063128723	(Get FASTA)	NCBI Sequence Viewer
	XP_063128724	(Get FASTA)	NCBI Sequence Viewer
	XP_063128725	(Get FASTA)	NCBI Sequence Viewer
	XP_063128726	(Get FASTA)	NCBI Sequence Viewer
	XP_063128727	(Get FASTA)	NCBI Sequence Viewer
	XP_063128728	(Get FASTA)	NCBI Sequence Viewer
	XP_063128729	(Get FASTA)	NCBI Sequence Viewer
	XP_063128730	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB43905	(Get FASTA)	NCBI Sequence Viewer
	BAD18068	(Get FASTA)	NCBI Sequence Viewer
	EDM09463	(Get FASTA)	NCBI Sequence Viewer
	EDM09464	(Get FASTA)	NCBI Sequence Viewer
	EDM09465	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046286
	ENSRNOP00000046286.3
GenBank Protein	Q75N33	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446023 ⟸ NM_053571

- UniProtKB:

Q75N33 (UniProtKB/Swiss-Prot), Q925T1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MELWVPQTQGRTTGLSRDANRRLQSGHYRPRPHPQYSGDNYHQWQDAHKNSKPQQDPRDDHQQP
HYVPRSGEWSQPVSGADYLKGSYPSHPYSRSGYEDPYQSYHTPTPRDEYAYGNYYYHGHPQLPQ
GERVARQGSPYIWHEDHRDQRHFSEHHWEKHNSTFEANSDTQFQFTSKNPYNDNPASAFGLEQP
GEFFPESGAQKQKPSLTSKSNLLRQHESGLSSSSYELSQYMTEAPEQYEPMVSATWRPIQADDT
SATVPKAPMRFYVPHVSVSFGPGGQLICVSPNSPADGQTALVEVHSMEVILNDFEDQEEMRAFP
GPLIREDIHKVDIMTFCQKKAAQCLKSETPGSRDSALLWQLLVLLCRQNGSMVGSDIAELLMQD
CKKLEKYKRQPPVANLINLTDEDWPVLSSGTRNLLTGEIPPNVDTPAQIVEKFTKLLYYGRKKE
GLGMGYEEPLVGPMPCSLASKMDPRTYNWVMSGFTTTLALNDPLQTLFQLMSGRIPQAATCCGD
KQWGDWRPHLAVILSNQAGDAELYQRAIVSMGDTLAGKGLVEASHFCYLMAHVPFGHYTVKTDH
LALVGSNHSQEFLKFATIEAIQRTEIFEYCQMLGRPKSFIPSFQVYKLLYASRLADYGLASQAL
HYCEAIGAAVLSEGGSSHPVLLAELIKLAEKLKLSDPLVLESRRGDRVLEPDWLVQLRRKHKEL
EQTRTGDLRDPDLTPSDIYGARRTTDTPYRDLYGQQNYSEDSEYSSALWPTSEQTSLTNPTPQQ
PFPLQRDTYSERDGPVHMGTPVPLYSVPATHLTVISGSSSGSGVAVTGAPGGRVGEEMLQKHPA
LGENTVPQEAVQDPDGLAVISSPQTPLAPRDRSFSEDSAISAKEDEEGSSDGADKPPHPDASQK
EKLRDGKNTKSSGFGWFSWFRSKPASSVSTSGDEDSVDSSDSEESPRASPPHHASLGLSPTPPL
SSPSLPGASTFPRGTGGNSLQGSSNSSGMAEGVGIGGFSGPQGVSSEFYSQPGALPPPPTLQGA
VPLYNPSQVPQLPTASSLNRPNRLAQRRYPSQPC

hide sequence

Ensembl Acc Id:

ENSRNOP00000007321 ⟸ ENSRNOT00000007321

Ensembl Acc Id:

ENSRNOP00000046286 ⟸ ENSRNOT00000044008

RefSeq Acc Id:	XP_038947072 ⟸ XM_039091144
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038947073 ⟸ XM_039091145
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038947075 ⟸ XM_039091147
- Peptide Label:	isoform X3
- UniProtKB:	A6ID32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128722 ⟸ XM_063272652
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128728 ⟸ XM_063272658
- Peptide Label:	isoform X2
- UniProtKB:	Q925T1 (UniProtKB/Swiss-Prot), Q75N33 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128730 ⟸ XM_063272660
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063128723 ⟸ XM_063272653
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128724 ⟸ XM_063272654
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128725 ⟸ XM_063272655
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128726 ⟸ XM_063272656
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128727 ⟸ XM_063272657
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128729 ⟸ XM_063272659
- Peptide Label:	isoform X2
- UniProtKB:	Q925T1 (UniProtKB/Swiss-Prot), Q75N33 (UniProtKB/Swiss-Prot)

Protein Domains

Sec16 central conserved Sec16 Sec23-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q75N33-F1-model_v2	AlphaFold	Q75N33	1-1057	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698922

Promoter ID:

EPDNEW_R9447

Type:

initiation region

Name:

Sec16b_1

Description:

SEC16 homolog B, endoplasmic reticulum export factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	75,175,206 - 75,175,266	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621658	AgrOrtholog
BioCyc Gene	G2FUF-17791	BioCyc
Ensembl Genes	ENSRNOG00000005229	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000044008	ENTREZGENE
	ENSRNOT00000044008.6	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.1030	UniProtKB/Swiss-Prot
InterPro	ACE1_Sec16_Sec31	UniProtKB/Swiss-Prot
	Sec16_CCD	UniProtKB/Swiss-Prot
KEGG Report	rno:89868	UniProtKB/Swiss-Prot
NCBI Gene	89868	ENTREZGENE
PANTHER	PROTEIN TRANSPORT PROTEIN SEC16B	UniProtKB/Swiss-Prot
	PTHR13402	UniProtKB/Swiss-Prot
Pfam	Sec16	UniProtKB/Swiss-Prot
	Sec16_C	UniProtKB/Swiss-Prot
PhenoGen	Sec16b	PhenoGen
RatGTEx	ENSRNOG00000005229	RatGTEx
UniProt	A6ID32	ENTREZGENE, UniProtKB/TrEMBL
	Q75N33	ENTREZGENE
	Q925T1	ENTREZGENE
	SC16B_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q925T1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-30	Sec16b	SEC16 homolog B, endoplasmic reticulum export factor	Sec16b	SEC16 homolog B (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-25	Sec16b	SEC16 homolog B (S. cerevisiae)	Lztr2	leucine zipper transcription regulator 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Lztr2	leucine zipper transcription regulator 2	Rgpr	regucalcin gene promotor region related protein	Symbol and Name updated	1299863	APPROVED
2004-02-26	Rgpr	regucalcin gene promotor region related protein			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Rgpr				Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_homology	has greater than 70% identity to human and mouse homologs	633817

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD