Timm9 (translocase of inner mitochondrial membrane 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Timm9 (translocase of inner mitochondrial membrane 9) Rattus norvegicus
Analyze
Symbol: Timm9
Name: translocase of inner mitochondrial membrane 9
RGD ID: 621656
Description: Predicted to enable several functions, including membrane insertase activity; protein homodimerization activity; and protein-folding chaperone binding activity. Predicted to be involved in protein insertion into mitochondrial inner membrane. Predicted to be located in mitochondrial intermembrane space. Predicted to be part of TIM22 mitochondrial import inner membrane insertion complex and mitochondrial intermembrane space chaperone complex. Predicted to be active in mitochondrial inner membrane. Orthologous to human TIMM9 (translocase of inner mitochondrial membrane 9); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: mitochondrial import inner membrane translocase subunit Tim9; Tim9; Tim9a; Timm9a; translocase of inner mitochondrial membrane 9 homolog; translocase of inner mitochondrial membrane 9 homolog (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,346,065 - 95,358,895 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl695,346,065 - 95,358,895 (-)EnsemblGRCr8
mRatBN7.2689,610,094 - 89,622,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,610,094 - 89,622,924 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx689,994,125 - 90,006,953 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,293,594 - 90,306,422 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,733,091 - 89,745,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,549,484 - 93,562,314 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)Ensemblrn6Rnor6.0
Rnor_5.06103,015,072 - 103,027,963 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4693,218,517 - 93,231,326 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera688,094,219 - 88,107,044 (-)NCBICelera
RGSC_v3.1693,221,978 - 93,222,488 (-)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enniatin  (ISO)
epoxiconazole  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
genistein  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
menadione  (ISO)
methidathion  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Assembly of beta-barrel proteins in the mitochondrial outer membrane. Hohr AI, etal., Biochim Biophys Acta. 2015 Jan;1853(1):74-88. doi: 10.1016/j.bbamcr.2014.10.006. Epub 2014 Oct 8.
2. Organization and function of the small Tim complexes acting along the import pathway of metabolite carriers into mammalian mitochondria. Muhlenbein N, etal., J Biol Chem. 2004 Apr 2;279(14):13540-6. Epub 2004 Jan 15.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:11101512   PMID:14651853   PMID:15057822   PMID:16387659   PMID:18614015  


Genomics

Comparative Map Data
Timm9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,346,065 - 95,358,895 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl695,346,065 - 95,358,895 (-)EnsemblGRCr8
mRatBN7.2689,610,094 - 89,622,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,610,094 - 89,622,924 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx689,994,125 - 90,006,953 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,293,594 - 90,306,422 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,733,091 - 89,745,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,549,484 - 93,562,314 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)Ensemblrn6Rnor6.0
Rnor_5.06103,015,072 - 103,027,963 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4693,218,517 - 93,231,326 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera688,094,219 - 88,107,044 (-)NCBICelera
RGSC_v3.1693,221,978 - 93,222,488 (-)NCBI
Cytogenetic Map6q24NCBI
TIMM9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,408,494 - 58,427,531 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,407,461 - 58,427,655 (-)Ensemblhg38GRCh38
GRCh371458,875,212 - 58,894,249 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,945,123 - 57,963,985 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341457,945,123 - 57,963,985NCBI
Celera1438,925,342 - 38,944,209 (-)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1439,039,988 - 39,058,854 (-)NCBIHuRef
CHM1_11458,813,939 - 58,832,779 (-)NCBICHM1_1
T2T-CHM13v2.01452,615,545 - 52,634,567 (-)NCBIT2T-CHM13v2.0
Timm9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,169,946 - 71,183,476 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,169,947 - 71,183,458 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381271,123,172 - 71,136,708 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,123,173 - 71,136,684 (-)Ensemblmm10GRCm38
MGSCv371272,224,159 - 72,237,662 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361272,041,777 - 72,055,280 (-)NCBIMGSCv36mm8
Celera1272,223,204 - 72,236,707 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
Timm9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546612,115,010 - 12,125,024 (-)Ensembl
ChiLan1.0NW_00495546612,115,003 - 12,125,024 (-)NCBIChiLan1.0ChiLan1.0
TIMM9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,530,271 - 59,549,211 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,746,785 - 58,765,725 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01439,000,431 - 39,019,381 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,268,137 - 57,287,134 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,268,137 - 57,287,014 (-)EnsemblpanPan2panpan1.1
TIMM9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,755,514 - 33,772,183 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,755,960 - 33,757,980 (-)EnsemblcanFam3CanFam3.1
CanFam3.1 Ensembl121,462,801 - 21,463,070 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha833,516,797 - 33,533,459 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0833,996,953 - 34,013,637 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,996,951 - 34,012,223 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,609,476 - 33,626,113 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,677,599 - 33,694,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0834,051,958 - 34,068,609 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Timm9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,392,479 - 71,405,674 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,786,019 - 2,799,635 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,786,019 - 2,799,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMM9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11187,485,407 - 187,504,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,389,459 - 208,408,465 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIMM9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,591,561 - 35,602,679 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,870,877 - 23,884,658 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timm9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248843,467,103 - 3,475,217 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248843,466,408 - 3,477,038 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Timm9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1784,757,066 - 84,770,066 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Timm9
23 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:252
Count of miRNA genes:171
Interacting mature miRNAs:193
Transcripts:ENSRNOT00000010871
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat

Markers in Region
RH141247  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2689,610,241 - 89,610,424 (+)MAPPERmRatBN7.2
Rnor_6.0693,549,632 - 93,549,814NCBIRnor6.0
Rnor_5.06103,015,220 - 103,015,402UniSTSRnor5.0
RGSC_v3.4693,218,665 - 93,218,847UniSTSRGSC3.4
Celera688,094,367 - 88,094,549UniSTS
RH 3.4 Map6639.2UniSTS
Cytogenetic Map6q24UniSTS
AI100846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2689,618,252 - 89,618,435 (+)MAPPERmRatBN7.2
Rnor_6.0693,557,643 - 93,557,825NCBIRnor6.0
Rnor_5.06103,023,231 - 103,023,413UniSTSRnor5.0
RGSC_v3.4693,226,676 - 93,226,858UniSTSRGSC3.4
Celera688,102,378 - 88,102,560UniSTS
RH 3.4 Map6640.3UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001276429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_075101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF150102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB775939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV726219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM052814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM056491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010871   ⟹   ENSRNOP00000010871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl695,346,065 - 95,358,895 (-)Ensembl
mRatBN7.2 Ensembl689,610,094 - 89,622,924 (-)Ensembl
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088790   ⟹   ENSRNOP00000071324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)Ensembl
RefSeq Acc Id: NM_001276429   ⟹   NP_001263358
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276430   ⟹   NP_001263359
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133604   ⟹   NP_598288
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: NR_075101
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111743   ⟹   XP_038967671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,067 - 95,358,631 (-)NCBI
mRatBN7.2689,610,096 - 89,622,660 (-)NCBI
RefSeq Acc Id: XM_063261516   ⟹   XP_063117586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,067 - 95,357,078 (-)NCBI
RefSeq Acc Id: XM_063261517   ⟹   XP_063117587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,067 - 95,358,884 (-)NCBI
RefSeq Acc Id: NP_001263359   ⟸   NM_001276430
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_598288   ⟸   NM_133604
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263358   ⟸   NM_001276429
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010871   ⟸   ENSRNOT00000010871
Ensembl Acc Id: ENSRNOP00000071324   ⟸   ENSRNOT00000088790
RefSeq Acc Id: XP_038967671   ⟸   XM_039111743
- Peptide Label: isoform X1
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117587   ⟸   XM_063261517
- Peptide Label: isoform X1
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117586   ⟸   XM_063261516
- Peptide Label: isoform X1
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
Protein Domains
Tim10-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV97-F1-model_v2 AlphaFold Q9WV97 1-89 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694649
Promoter ID:EPDNEW_R5173
Type:multiple initiation site
Name:Timm9_1
Description:translocase of inner mitochondrial membrane 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0693,562,302 - 93,562,362EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621656 AgrOrtholog
BioCyc Gene G2FUF-37183 BioCyc
Ensembl Genes ENSRNOG00000008222 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010871 ENTREZGENE
  ENSRNOT00000010871.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.810 UniProtKB/Swiss-Prot
InterPro Mito_inner_translocase_sub UniProtKB/Swiss-Prot
  Tim10-like UniProtKB/Swiss-Prot
  Tim10-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:171139 UniProtKB/Swiss-Prot
NCBI Gene 171139 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B UniProtKB/Swiss-Prot
Pfam zf-Tim10_DDP UniProtKB/Swiss-Prot
PhenoGen Timm9 PhenoGen
RatGTEx ENSRNOG00000008222 RatGTEx
Superfamily-SCOP SSF144122 UniProtKB/Swiss-Prot
UniProt A6HC17 ENTREZGENE, UniProtKB/TrEMBL
  Q9WV97 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Timm9  translocase of inner mitochondrial membrane 9  Timm9  translocase of inner mitochondrial membrane 9 homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Timm9  translocase of inner mitochondrial membrane 9 homolog (yeast)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Timm9  translocase of inner mitochondrial membrane 9 homolog (yeast)      Symbol and Name status set to provisional 70820 PROVISIONAL