Crisp2 (cysteine-rich secretory protein 2) - Rat Genome Database

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Gene: Crisp2 (cysteine-rich secretory protein 2) Rattus norvegicus
Analyze
Symbol: Crisp2
Name: cysteine-rich secretory protein 2
RGD ID: 621653
Description: Involved in cell-cell adhesion. Predicted to be active in extracellular space. Orthologous to human CRISP2 (cysteine rich secretory protein 2); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; ammonium chloride; beta-naphthoflavone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Crisp2l; cysteine-rich secretory protein 2-like; LOC360445; testis specific protein 1; Tpx1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8927,604,024 - 27,628,520 (+)NCBIGRCr8
mRatBN7.2920,107,649 - 20,131,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,107,701 - 20,131,959 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx928,678,924 - 28,703,210 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0933,753,480 - 33,777,777 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0932,064,272 - 32,088,563 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0923,503,223 - 23,527,502 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl923,503,236 - 23,527,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0922,361,201 - 22,385,467 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4916,247,687 - 16,271,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1916,245,058 - 16,269,255 (+)NCBI
Celera917,784,556 - 17,808,821 (+)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Molecular cloning of the rat Tpx-1 responsible for the interaction between spermatogenic and Sertoli cells. Maeda T, etal., Biochem Biophys Res Commun 1998 Jul 9;248(1):140-6.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Identification of a rat testis-specific gene encoding a potential rat outer dense fibre protein. O'Bryan MK, etal., Mol Reprod Dev 1998 Jul;50(3):313-22.
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Crisp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8927,604,024 - 27,628,520 (+)NCBIGRCr8
mRatBN7.2920,107,649 - 20,131,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,107,701 - 20,131,959 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx928,678,924 - 28,703,210 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0933,753,480 - 33,777,777 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0932,064,272 - 32,088,563 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0923,503,223 - 23,527,502 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl923,503,236 - 23,527,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0922,361,201 - 22,385,467 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4916,247,687 - 16,271,947 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1916,245,058 - 16,269,255 (+)NCBI
Celera917,784,556 - 17,808,821 (+)NCBICelera
Cytogenetic Map9q13NCBI
CRISP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38649,676,652 - 49,714,220 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl649,692,358 - 49,713,590 (-)EnsemblGRCh38hg38GRCh38
GRCh37649,660,072 - 49,681,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36649,768,031 - 49,789,233 (-)NCBINCBI36Build 36hg18NCBI36
Build 34649,768,030 - 49,789,215NCBI
Celera651,216,185 - 51,237,390 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef649,390,040 - 49,411,624 (-)NCBIHuRef
CHM1_1649,663,068 - 49,684,234 (-)NCBICHM1_1
T2T-CHM13v2.0649,518,797 - 49,556,206 (-)NCBIT2T-CHM13v2.0
Crisp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391741,075,625 - 41,105,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1741,074,911 - 41,117,894 (-)EnsemblGRCm39 Ensembl
GRCm381740,764,734 - 40,794,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1740,764,020 - 40,807,003 (-)EnsemblGRCm38mm10GRCm38
MGSCv371740,901,686 - 40,931,039 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361740,228,221 - 40,257,574 (-)NCBIMGSCv36mm8
Celera1744,176,242 - 44,205,885 (-)NCBICelera
Cytogenetic Map17B2NCBI
cM Map1719.54NCBI
CRISP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2564,176,207 - 64,197,919 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1660,041,095 - 60,063,570 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0649,262,081 - 49,284,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1650,523,471 - 50,544,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl650,514,123 - 50,544,622 (-)Ensemblpanpan1.1panPan2
CRISP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11217,534,077 - 17,553,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1217,531,940 - 17,593,549 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1217,430,077 - 17,449,532 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01218,028,252 - 18,047,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1218,028,211 - 18,096,892 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11217,547,634 - 17,567,065 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01217,653,842 - 17,673,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01217,783,216 - 17,802,677 (-)NCBIUU_Cfam_GSD_1.0
LOC101965978
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494652,985,672 - 52,998,617 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647610,964,027 - 10,974,129 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647610,964,824 - 10,974,129 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRISP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,751,182 - 43,770,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,751,174 - 43,771,050 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,065,187 - 50,085,062 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103221386
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11722,694,882 - 22,721,673 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1722,699,388 - 22,721,751 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604449,654,005 - 49,677,518 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Crisp2
209 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:118
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000017996
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 7
Medium 1 1
Low 1 3 6 2 6 2 4 5 6 2 7 4 4
Below cutoff 1 20 16 10 16 2 3 8 12 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017996   ⟹   ENSRNOP00000017996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl920,107,701 - 20,131,959 (+)Ensembl
Rnor_6.0 Ensembl923,503,236 - 23,527,496 (+)Ensembl
RefSeq Acc Id: NM_001011710   ⟹   NP_001011710
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8927,604,254 - 27,628,514 (+)NCBI
mRatBN7.2920,107,701 - 20,131,961 (+)NCBI
Rnor_6.0923,503,236 - 23,527,496 (+)NCBI
Rnor_5.0922,361,201 - 22,385,467 (+)NCBI
RGSC_v3.4916,247,687 - 16,271,947 (+)RGD
Celera917,784,556 - 17,808,821 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244643   ⟹   XP_006244705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8927,604,024 - 27,628,520 (+)NCBI
mRatBN7.2920,107,649 - 20,131,967 (+)NCBI
Rnor_6.0923,503,223 - 23,527,502 (+)NCBI
Rnor_5.0922,361,201 - 22,385,467 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001011710 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244705 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78799 (Get FASTA)   NCBI Sequence Viewer  
  BAA32029 (Get FASTA)   NCBI Sequence Viewer  
  EDM18670 (Get FASTA)   NCBI Sequence Viewer  
  EDM18671 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017996
  ENSRNOP00000017996.4
Reference Protein Sequences
RefSeq Acc Id: NP_001011710   ⟸   NM_001011710
- Peptide Label: precursor
- UniProtKB: A6JJ62 (UniProtKB/TrEMBL),   F7FBM2 (UniProtKB/TrEMBL),   O88205 (UniProtKB/TrEMBL),   Q9R1L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244705   ⟸   XM_006244643
- Peptide Label: isoform X1
- UniProtKB: A6JJ62 (UniProtKB/TrEMBL),   F7FBM2 (UniProtKB/TrEMBL),   O88205 (UniProtKB/TrEMBL),   Q9R1L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017996   ⟸   ENSRNOT00000017996
Protein Domains
ShKT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88205-F1-model_v2 AlphaFold O88205 1-243 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696566
Promoter ID:EPDNEW_R7091
Type:initiation region
Name:Crisp2_1
Description:cysteine-rich secretory protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0923,503,270 - 23,503,330EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621653 AgrOrtholog
BioCyc Gene G2FUF-28080 BioCyc
Ensembl Genes ENSRNOG00000013225 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017996 ENTREZGENE
  ENSRNOT00000017996.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.740 UniProtKB/TrEMBL
  3.40.33.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112769 IMAGE-MGC_LOAD
InterPro Allrgn_V5/Tpx1 UniProtKB/TrEMBL
  Allrgn_V5/Tpx1_CS UniProtKB/TrEMBL
  CAP_sf UniProtKB/TrEMBL
  Crisp-like_dom UniProtKB/TrEMBL
  Cysteine_rich_secretory UniProtKB/TrEMBL
  SCP-like_extracellular UniProtKB/TrEMBL
  SCP_CRISP UniProtKB/TrEMBL
  ShKT_dom UniProtKB/TrEMBL
KEGG Report rno:360445 UniProtKB/TrEMBL
MGC_CLONE MGC:93370 IMAGE-MGC_LOAD
NCBI Gene Crisp2 ENTREZGENE
PANTHER Allrgn_V5/Tpx1 UniProtKB/TrEMBL
  CYSTEINE-RICH SECRETORY PROTEIN 2 UniProtKB/TrEMBL
Pfam Crisp UniProtKB/TrEMBL
  SCP UniProtKB/TrEMBL
PhenoGen Crisp2 PhenoGen
PRINTS V5TPXLIKE UniProtKB/TrEMBL
PROSITE CRISP_1 UniProtKB/TrEMBL
  CRISP_2 UniProtKB/TrEMBL
  SHKT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013225 RatGTEx
SMART SCP UniProtKB/TrEMBL
Superfamily-SCOP Crisp domain-like UniProtKB/TrEMBL
  SCP-like_extracellular UniProtKB/TrEMBL
UniProt A6JJ62 ENTREZGENE
  F7FBM2 ENTREZGENE, UniProtKB/TrEMBL
  O88205 ENTREZGENE, UniProtKB/TrEMBL
  Q9R1L4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6JJ62 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Crisp2  cysteine-rich secretory protein 2  LOC100361853  cysteine-rich secretory protein 2-like  Data merged from RGD:2319324 1643240 APPROVED
2010-05-05 LOC100361853  cysteine-rich secretory protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-10-17 Crisp2  cysteine-rich secretory protein 2  Crisp2l  cysteine-rich secretory protein 2-like  Symbol and Name updated 1299863 APPROVED
2008-10-17 Crisp2l  cysteine-rich secretory protein 2-like  Crisp2  cysteine-rich secretory protein 2  Data merged from RGD:1306609 737654 APPROVED
2008-05-02 Crisp2l  cysteine-rich secretory protein 2-like  Crisp2  cysteine-rich secretory protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-02 Crisp2  cysteine-rich secretory protein 2  Crisp2_predicted  cysteine-rich secretory protein 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Crisp2  cysteine-rich secretory protein 2  Tpx1  testis specific protein 1  Symbol and Name updated 1299863 APPROVED
2005-01-12 Crisp2_predicted  cysteine-rich secretory protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Tpx1  testis specific protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_process inhibits the binding of spermatogenic cells to Sertoli cells 634409
gene_protein 243 amino acids 634409