Zbtb18 (zinc finger and BTB domain containing 18) - Rat Genome Database

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Gene: Zbtb18 (zinc finger and BTB domain containing 18) Rattus norvegicus
Analyze
Symbol: Zbtb18
Name: zinc finger and BTB domain containing 18
RGD ID: 621548
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription by RNA polymerase II; and skeletal muscle tissue development. Predicted to act upstream of or within several processes, including in utero embryonic development; nervous system development; and regulation of cell division. Predicted to be located in heterochromatin. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 22. Orthologous to human ZBTB18 (zinc finger and BTB domain containing 18); INTERACTS WITH ammonium chloride; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 58 kDa repressor protein; Rp58; rRP58; transcriptional repressor RP58; Zfp238; zinc finger and BTB domain-containing protein 18; zinc finger protein 238; Znf238
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,971,602 - 91,980,058 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1391,969,755 - 91,980,386 (+)EnsemblGRCr8
mRatBN7.21389,439,501 - 89,447,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1391,944,737 - 91,953,193 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01393,344,946 - 93,353,402 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01390,525,391 - 90,533,843 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01395,582,234 - 95,593,316 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)Ensemblrn6Rnor6.0
Rnor_5.013100,031,993 - 100,039,682 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41393,345,905 - 93,347,473 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1389,005,808 - 89,007,376 (+)NCBICelera
RGSC_v3.11393,534,788 - 93,536,357 (+)NCBI
Cytogenetic Map13q25NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
heterochromatin  (IEA,ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Structural analysis of the gene encoding RP58, a sequence-specific transrepressor associated with heterochromatin. Meng G, etal., Gene 2000 Jan 25;242(1-2):59-64.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9756912   PMID:12040400   PMID:18262495   PMID:19409883   PMID:20059953   PMID:25796446   PMID:37183291  


Genomics

Comparative Map Data
Zbtb18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,971,602 - 91,980,058 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1391,969,755 - 91,980,386 (+)EnsemblGRCr8
mRatBN7.21389,439,501 - 89,447,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1391,944,737 - 91,953,193 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01393,344,946 - 93,353,402 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01390,525,391 - 90,533,843 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01395,582,234 - 95,593,316 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)Ensemblrn6Rnor6.0
Rnor_5.013100,031,993 - 100,039,682 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41393,345,905 - 93,347,473 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1389,005,808 - 89,007,376 (+)NCBICelera
RGSC_v3.11393,534,788 - 93,536,357 (+)NCBI
Cytogenetic Map13q25NCBI
ZBTB18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381244,048,491 - 244,057,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1244,048,547 - 244,057,476 (+)Ensemblhg38GRCh38
GRCh371244,211,955 - 244,220,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361242,281,184 - 242,287,401 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341240,540,625 - 240,546,817NCBI
Celera1217,504,910 - 217,511,127 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1214,598,471 - 214,604,688 (+)NCBIHuRef
CHM1_11245,484,555 - 245,493,088 (+)NCBICHM1_1
T2T-CHM13v2.01243,465,054 - 243,473,966 (+)NCBIT2T-CHM13v2.0
Zbtb18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,269,892 - 177,278,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,269,917 - 177,278,330 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381177,442,351 - 177,450,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,442,351 - 177,450,764 (+)Ensemblmm10GRCm38
MGSCv371179,374,792 - 179,380,895 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361179,281,336 - 179,287,439 (+)NCBIMGSCv36mm8
Celera1184,508,151 - 184,514,258 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.72NCBI
Zbtb18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554067,364,080 - 7,373,483 (+)Ensembl
ChiLan1.0NW_0049554067,364,080 - 7,372,038 (+)NCBIChiLan1.0ChiLan1.0
ZBTB18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,082,670 - 5,091,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan115,304,714 - 5,313,352 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01219,660,496 - 219,669,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11225,042,282 - 225,050,259 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,042,281 - 225,050,259 (+)EnsemblpanPan2panpan1.1
ZBTB18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1735,123,417 - 35,130,349 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl735,117,209 - 35,129,134 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha734,597,536 - 34,605,025 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0734,950,266 - 34,957,787 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,857,686 - 34,958,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,787,410 - 34,794,904 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0734,803,630 - 34,811,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0735,068,175 - 35,075,704 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934448,033,306 - 48,041,262 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365266,705,983 - 6,712,281 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365266,706,035 - 6,714,011 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,913,025 - 16,920,586 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11016,913,022 - 16,921,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21019,351,349 - 19,359,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12581,077,011 - 81,085,049 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605583,261,294 - 83,270,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477115,425,604 - 15,430,542 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477115,425,610 - 15,432,012 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb18
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11055,961,185 - 55,969,474 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb18
36 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:86
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000005849
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1302791Stl29Serum triglyceride level QTL 293.30.0011blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)138933312992500981Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
Zfp238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21389,443,319 - 89,444,237 (+)MAPPERmRatBN7.2
Rnor_6.01395,588,676 - 95,589,592NCBIRnor6.0
Rnor_5.013100,035,042 - 100,035,958UniSTSRnor5.0
RGSC_v3.41393,344,913 - 93,345,829UniSTSRGSC3.4
Celera1389,004,816 - 89,005,732UniSTS
Cytogenetic Map13q25UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF221838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005849   ⟹   ENSRNOP00000005849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,969,755 - 91,980,386 (+)Ensembl
mRatBN7.2 Ensembl1389,439,691 - 89,445,877 (+)Ensembl
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094045   ⟹   ENSRNOP00000078776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1389,440,186 - 89,445,877 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098128   ⟹   ENSRNOP00000077961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,973,933 - 91,978,209 (+)Ensembl
mRatBN7.2 Ensembl1389,439,420 - 89,446,151 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105416   ⟹   ENSRNOP00000082972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,971,576 - 91,980,056 (+)Ensembl
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115308   ⟹   ENSRNOP00000086781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,973,933 - 91,980,058 (+)Ensembl
mRatBN7.2 Ensembl1389,440,159 - 89,447,957 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156822   ⟹   ENSRNOP00000104093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,972,210 - 91,980,057 (+)Ensembl
RefSeq Acc Id: NM_001401285   ⟹   NP_001388214
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,973,933 - 91,980,058 (+)NCBI
mRatBN7.21389,441,832 - 89,447,958 (+)NCBI
RefSeq Acc Id: NM_022678   ⟹   NP_073169
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,602 - 91,980,058 (+)NCBI
mRatBN7.21389,439,501 - 89,447,958 (+)NCBI
Rnor_6.01395,589,668 - 95,591,236 (+)NCBI
Rnor_5.013100,031,993 - 100,039,682 (+)NCBI
RGSC_v3.41393,345,905 - 93,347,473 (+)RGD
Celera1389,005,808 - 89,007,376 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250328   ⟹   XP_006250390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,972,623 - 91,980,058 (+)NCBI
mRatBN7.21389,440,517 - 89,447,958 (+)NCBI
Rnor_6.01395,585,624 - 95,593,316 (+)NCBI
Rnor_5.013100,031,993 - 100,039,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250331   ⟹   XP_006250393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,975,384 - 91,980,058 (+)NCBI
mRatBN7.21389,443,287 - 89,447,958 (+)NCBI
Rnor_6.01395,588,627 - 95,593,316 (+)NCBI
Rnor_5.013100,031,993 - 100,039,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091072   ⟹   XP_038947000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,734 - 91,980,058 (+)NCBI
mRatBN7.21389,439,633 - 89,447,958 (+)NCBI
RefSeq Acc Id: XM_039091073   ⟹   XP_038947001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,972,489 - 91,980,058 (+)NCBI
mRatBN7.21389,440,370 - 89,447,958 (+)NCBI
RefSeq Acc Id: XM_039091074   ⟹   XP_038947002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,918 - 91,980,058 (+)NCBI
mRatBN7.21389,439,817 - 89,447,958 (+)NCBI
RefSeq Acc Id: XM_039091078   ⟹   XP_038947006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,922 - 91,980,058 (+)NCBI
mRatBN7.21389,439,821 - 89,447,958 (+)NCBI
RefSeq Acc Id: NP_073169   ⟸   NM_022678
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A6Y8 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250390   ⟸   XM_006250328
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250393   ⟸   XM_006250331
- Peptide Label: isoform X2
- UniProtKB: G3V6J7 (UniProtKB/TrEMBL),   A0A8I6A6Y8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005849   ⟸   ENSRNOT00000005849
RefSeq Acc Id: XP_038947000   ⟸   XM_039091072
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947002   ⟸   XM_039091074
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947006   ⟸   XM_039091078
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6Y8 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947001   ⟸   XM_039091073
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077961   ⟸   ENSRNOT00000098128
Ensembl Acc Id: ENSRNOP00000078776   ⟸   ENSRNOT00000094045
Ensembl Acc Id: ENSRNOP00000086781   ⟸   ENSRNOT00000115308
Ensembl Acc Id: ENSRNOP00000082972   ⟸   ENSRNOT00000105416
RefSeq Acc Id: NP_001388214   ⟸   NM_001401285
- Peptide Label: isoform 2
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104093   ⟸   ENSRNOT00000156822
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JKY3-F1-model_v2 AlphaFold Q9JKY3 1-522 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621548 AgrOrtholog
BioCyc Gene G2FUF-17197 BioCyc
Ensembl Genes ENSRNOG00000004423 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000005849 ENTREZGENE
  ENSRNOT00000105416 ENTREZGENE
  ENSRNOT00000115308 ENTREZGENE
  ENSRNOT00000156822 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:64619 UniProtKB/Swiss-Prot
NCBI Gene 64619 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 18 UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
Pfam BTB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
  zf-C2H2_4 UniProtKB/Swiss-Prot
PhenoGen Zbtb18 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004423 RatGTEx
SMART BTB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A0A8I5Y6J3_RAT UniProtKB/TrEMBL
  A0A8I6A6Y8 ENTREZGENE, UniProtKB/TrEMBL
  A6JGD3 ENTREZGENE, UniProtKB/TrEMBL
  G3V6J7 ENTREZGENE, UniProtKB/TrEMBL
  Q9JKY3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-28 Zbtb18  zinc finger and BTB domain containing 18  Zfp238  zinc finger protein 238  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Zfp238  zinc finger protein 238  Rp58  RP58 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Rp58  RP58 protein      Symbol and Name status set to provisional 70820 PROVISIONAL