Symbol:
Adam3a
Name:
ADAM metallopeptidase domain 3A
RGD ID:
621469
Description:
Predicted to enable metalloendopeptidase activity. Involved in male gonad development. Predicted to be located in membrane raft and sperm head. Predicted to be part of protein-containing complex. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in brain glioma and conjunctival squamous cell carcinoma. Orthologous to human ADAM3A (ADAM metallopeptidase domain 3A (pseudogene)); INTERACTS WITH ammonium chloride; bisphenol A; cadmium dichloride.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
a disintegrin and metallopeptidase domain 3 (cyritestin); a disintegrin and metalloprotease domain 3; a disintegrin and metalloprotease domain 3 (cyritestin); ADAM metallopeptidase domain 3; ADAM metallopeptidase domain 3A (cyritestin 1); ADAM metallopeptidase domain 3A (pseudogene); Adam3; cyritestin; tMDC I; tMDCI
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 74,002,566 - 74,052,579 (+) NCBI GRCr8 mRatBN7.2 16 67,299,949 - 67,349,970 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 67,299,949 - 67,349,968 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 16 72,577,102 - 72,627,111 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 75,982,777 - 76,032,785 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 71,231,868 - 71,282,130 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 72,086,878 - 72,136,685 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 72,086,878 - 72,136,687 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 16 71,733,699 - 71,783,768 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 16 71,729,856 - 71,779,922 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 16 71,730,120 - 71,780,187 (+) NCBI Celera 16 65,201,618 - 65,251,184 (+) NCBI Celera Cytogenetic Map 16 q12.4 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
1.
Identification of multiple DNA copy number alterations including frequent 8p11.22 amplification in conjunctival squamous cell carcinoma.
Asnaghi L, etal., Invest Ophthalmol Vis Sci. 2014 Dec 9;55(12):8604-13. doi: 10.1167/iovs.14-14920.
2.
Homozygous loss of ADAM3A revealed by genome-wide analysis of pediatric high-grade glioma and diffuse intrinsic pontine gliomas.
Barrow J, etal., Neuro Oncol. 2011 Feb;13(2):212-22. doi: 10.1093/neuonc/noq158. Epub 2010 Dec 7.
3.
Rat MDC family of proteins: sequence analysis, tissue distribution, and expression in prepubertal and adult rat testis.
Frayne J, etal., Mol Reprod Dev 1997 Oct;48(2):159-67.
4.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.
Rat ISS GO annotations from MGI mouse gene data--August 2006
MGD data from the GO Consortium
6.
Electronic Transfer of LocusLink and RefSeq Data
NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.
GOA pipeline
RGD automated data pipeline
8.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
9.
Comprehensive gene review and curation
RGD comprehensive gene curation
10.
Chronological gene expression of ADAMs during testicular development: prespermatogonia (gonocytes) express fertilin beta (ADAM2).
Rosselot C, etal., Dev Dyn. 2003 Jul;227(3):458-67.
11.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Adam3a (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 74,002,566 - 74,052,579 (+) NCBI GRCr8 mRatBN7.2 16 67,299,949 - 67,349,970 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 67,299,949 - 67,349,968 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 16 72,577,102 - 72,627,111 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 75,982,777 - 76,032,785 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 71,231,868 - 71,282,130 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 72,086,878 - 72,136,685 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 72,086,878 - 72,136,687 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 16 71,733,699 - 71,783,768 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 16 71,729,856 - 71,779,922 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 16 71,730,120 - 71,780,187 (+) NCBI Celera 16 65,201,618 - 65,251,184 (+) NCBI Celera Cytogenetic Map 16 q12.4 NCBI
ADAM3A (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 8 39,451,045 - 39,522,989 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 39,451,045 - 39,522,852 (-) Ensembl GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 39,455,339 - 39,522,810 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 8 39,308,564 - 39,380,508 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 8 39,427,721 - 39,499,524 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 8 39,427,721 - 39,499,524 NCBI Cytogenetic Map 8 p11.22 NCBI HuRef 8 37,840,707 - 37,913,729 (-) NCBI HuRef T2T-CHM13v2.0 8 39,728,311 - 39,800,254 (-) NCBI T2T-CHM13v2.0
Adam3 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 25,167,248 - 25,216,393 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 25,167,241 - 25,215,868 (-) Ensembl GRCm39 Ensembl GRCm38 8 24,677,232 - 24,726,377 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 24,677,225 - 24,725,852 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 25,787,706 - 25,836,297 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 26,142,777 - 26,191,370 (-) NCBI MGSCv36 mm8 Celera 8 26,157,717 - 26,206,590 (-) NCBI Celera Cytogenetic Map 8 A2 NCBI cM Map 8 13.09 NCBI
.
Predicted Target Of
Count of predictions: 52 Count of miRNA genes: 49 Interacting mature miRNAs: 50 Transcripts: ENSRNOT00000023756 Prediction methods: Microtar, Miranda, Rnahybrid Result types: miRGate_prediction
2300163 Bmd64 Bone mineral density QTL 64 5.3 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 16 37752156 82752156 Rat 1600378 Arunc4 Aerobic running capacity QTL 4 0.03 exercise endurance trait (VT:0002332) maximum distance run on treadmill (CMO:0001406) 16 380245 80345693 Rat 70215 Niddm29 Non-insulin dependent diabetes mellitus QTL 29 3.54 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 16 19004435 75226532 Rat 1578768 Stresp22 Stress response QTL 22 2.8 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 16 35288870 80288870 Rat 7205510 Activ5 Activity QTL 5 3.78 0.00028 locomotor behavior trait (VT:0001392) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 16 42396345 84729064 Rat 631525 Pia14 Pristane induced arthritis QTL 14 4.4 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 16 55711087 83402471 Rat 8694453 Bw172 Body weight QTL 172 8.33 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 16 24325513 69325513 Rat 7411648 Foco22 Food consumption QTL 22 15 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 16 52726464 84729064 Rat 6903294 Stl30 Serum triglyceride level QTL 30 2.6 0.0013 blood triglyceride amount (VT:0002644) plasma triglyceride level (CMO:0000548) 16 25152793 70152793 Rat 2293690 Bss45 Bone structure and strength QTL 45 5.13 0.0001 lumbar vertebra morphology trait (VT:0010494) lumbar vertebra cortical cross-sectional area (CMO:0001690) 16 37752156 82752156 Rat 8694364 Abfw7 Abdominal fat weight QTL 7 12.22 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 16 52726464 84729064 Rat 8694429 Bw164 Body weight QTL 164 5 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 16 52726464 84729064 Rat 70205 Gcr3 Gastric cancer resistance QTL 3 2.3 stomach morphology trait (VT:0000470) stomach tumor diameter (CMO:0001889) 16 17696791 82635055 Rat
AU048981
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 16 67,301,971 - 67,302,179 (+) MAPPER mRatBN7.2 Rnor_6.0 16 72,088,901 - 72,089,108 NCBI Rnor6.0 Rnor_5.0 16 71,735,722 - 71,735,929 UniSTS Rnor5.0 RGSC_v3.4 16 71,731,879 - 71,732,086 UniSTS RGSC3.4 Celera 16 65,203,641 - 65,203,848 UniSTS Cytogenetic Map 16 q12.4 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
8
6
4
39
30
35
12
23
12
3
65
33
31
7
35
23
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000023756 ⟹ ENSRNOP00000023756
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 16 67,299,949 - 67,349,968 (+) Ensembl Rnor_6.0 Ensembl 16 72,086,878 - 72,136,685 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000078085 ⟹ ENSRNOP00000070106
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 16 72,086,907 - 72,136,687 (+) Ensembl
RefSeq Acc Id:
NM_020302 ⟹ NP_064698
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 16 74,002,566 - 74,052,577 (+) NCBI mRatBN7.2 16 67,299,949 - 67,349,968 (+) NCBI Rnor_6.0 16 72,086,878 - 72,136,685 (+) NCBI Rnor_5.0 16 71,733,699 - 71,783,768 (+) NCBI RGSC_v3.4 16 71,729,856 - 71,779,922 (+) RGD Celera 16 65,201,618 - 65,251,184 (+) RGD
Sequence:
GCCCCTGCACTATTCTGCCTTGCCTGCTTCCCAAGAGCTCAGGCGCAGGGGCCACGAGCTGCTGCCGTTGTACCAACTGTCATCATTGTGGCAAAGCCAGCAGCCACACCATGCTGCCGTTATTCCTG GTCCTCTCATGCCTAGGCCAATTGATCGCCGTAGGCAAGGACATAGAAACACCACTTATACAGATCACAGTGCCAGAGAAAATCGAGACCAACATCAAGGATGCCAAGGAATCAGAAACACAAGTCAC TTATGTGATCAGAATTGAGGGCAAAGCATACACACTCCAACTTGAAAAACAGTCATTTTTACATCCACATTTTGTGACAAATTTGCATAACAAGTTGGGAACATTGCAACCATATTTTTCTTTAGTAA AGAGTCACTGCTTTTATCAAGGACATGCTGTCGAGATTCCAGCATCGACCGTGACACTCAGCACTTGCTCAGGTCTCAGGGGCTTGCTGCAGTTGGAGAACGTGACTTACGGAATTGAACCCTTAGAG TCTTCAACTACACTCGAACACATACTTTATGAAATACAGAATCATAAAATTGATTATTCTCCCTTAAAAGAAAACTACACGAATTCCCAGGATGAAAGTGGGTCCTACCGAATTCTCGTGAAACCATT GAAAAGTTCAAACTCGAAACTAAGGAAGAGAATTCTGACGGTAAAGATCATCATGGATAAAGGCATGTTTGACCACGTGGGCTCTGAGGTGGGAGTCGCGACTCAGAAAGTTGTTCAGATGTTTGGTC TCATTAACACTATGTTTTCCCAGCTGAAGATGACTGTGATGTTAAACTCTCTGGAGATCTGGTCAGAAGAAAACAAGATAGAAACAAATGGGGATGCTGATGAAGTCCTGCAAAGGTTTCTGCTGTGG ACACACAAGGAAATGCCTCAAACAACCAAGGAAATAACCTACTTACTCCTGTATAAGGACCATCCTGATTATGTGGGAGCGACATATCATGGGATGGCCTGCAACCCAAAGTTCACAGCAGGAATCGC TCTGCACCCAAAGACGTTAGGTGTGGAGGGCTTTGCCATTGTTCTGTCACAGTTGCTGGGAATTAACCTGGGGCTGACATACGATGACATCTACAATTGCTTCTGTCGAGGAAGCACATGCATAATGA ATCCTTCAGCAATACATTCCGAAGGCATAAAGGTTTTTAGCAGTTGCAGCATGGATGAATTCAGGCAGCTGGCTTCACAGCCTGACCTAGATTGCCTTCTGAAGACACAGGAGACAGAAGTTGTTGCC CTGCCCCAGGCTGCAAAAGTTTGTGGTAACTACATCCTGGAGCCCCCAGAGCAGTGTGACTGTGGCCCAGCAGAGAGATGTTCTCATAAAAAGTGCTGTAAGTCTGAGGATTGTACCCTGCTTAGTGA TGCAGAGTGTGGTTCTGGGGCGTGCTGTGATAAAAGAACATGCAAGATAGCTGAAAGAGGACGCCTATGTAGGAAAAGTACGGACCAGTGCGACTTCCCAGAATTCTGCAATGGGACGTCTGAATTCT GTGTAGCTGATATAAAAGCTGCGGACCTGGAACCTTGCAACAATGAAACCGCCTATTGCTTCAAAGGGGTTTGCCAAGACCGCGACAGGCAGTGCACAGACTTATTTGGAAAATATGCTAAGGGTCCT AATTATGTGTGTGCACAAGAAGTGAATCTGCAGAATGACAAATTTGGAAACTGTCATGGGCGCTGTAATTATAGTGCTCTATTTTGTGGAAAAGCAGTTTGTTACTGGAGCTTTGCAGAACTCGTGAA AACAGACGTATTTGATGTTCAATATACTTACTTGGGAGGCCAAGTGTGTGTGTCCGCACATTTAAGAGTAAGGAATGATGAGACCAAGGATGACACATATGTCCGTGATGGCACTATTTGTGGTAATG GCCAGGTGTGTTACCGAGGGGAGTGCTTGCGTGTGCACGTCCTGAGGGGGGATAGGGAGTGTGAGGCCGATGACAAATGCCAAGGACATGGGATTTGCAACAATCAAAACAACTGTCAATGTGAAGCT GGTTTCGCTCCTCCAGAATGTGACATGACCCCTTCATCTCCAGGAGGGAGCATGGACGATGGATTTTGGCTGCCCTTAGATAAAAGCACACCGTTGGTTATCAAGCGGCCTGGCACTCAATATAAAAA GGGACTTTTGATCAGTTTCTATGTCTTCCTGCCTTTTCTCATTGTGACAGCCATTATGGTTGTTAAGCAGAATATCTCAAAGATGTTCGGGCAAGGAGAGGAAGAGTTTAGTGAAGGATCCATATCAG AAGAAATTAACGACAGCAAGCAGTCATAGAGCCAAAGCATTTATGCAACAGCAAAGCCACAACAGAAAAAGATCACCAAGAAAGTCACCATTCCTTGGTCTTATTTCGAGAACAAGAACCAGTCCATC TCTTTCTCCGTGGCTTACTGGTTTCAGTTATCCATGCCTCCAAATAAATCCTATGGCTGAAAGTA
hide sequence
RefSeq Acc Id:
XM_039094792 ⟹ XP_038950720
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 16 74,002,698 - 74,052,579 (+) NCBI mRatBN7.2 16 67,300,078 - 67,349,970 (+) NCBI
RefSeq Acc Id:
XM_039094793 ⟹ XP_038950721
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 16 74,018,957 - 74,052,579 (+) NCBI mRatBN7.2 16 67,316,352 - 67,349,970 (+) NCBI
RefSeq Acc Id:
NP_064698 ⟸ NM_020302
- Peptide Label:
precursor
- UniProtKB:
P70534 (UniProtKB/TrEMBL), D3ZSV4 (UniProtKB/TrEMBL)
- Sequence:
MLPLFLVLSCLGQLIAVGKDIETPLIQITVPEKIETNIKDAKESETQVTYVIRIEGKAYTLQLEKQSFLHPHFVTNLHNKLGTLQPYFSLVKSHCFYQGHAVEIPASTVTLSTCSGLRGLLQLENVTY GIEPLESSTTLEHILYEIQNHKIDYSPLKENYTNSQDESGSYRILVKPLKSSNSKLRKRILTVKIIMDKGMFDHVGSEVGVATQKVVQMFGLINTMFSQLKMTVMLNSLEIWSEENKIETNGDADEVL QRFLLWTHKEMPQTTKEITYLLLYKDHPDYVGATYHGMACNPKFTAGIALHPKTLGVEGFAIVLSQLLGINLGLTYDDIYNCFCRGSTCIMNPSAIHSEGIKVFSSCSMDEFRQLASQPDLDCLLKTQ ETEVVALPQAAKVCGNYILEPPEQCDCGPAERCSHKKCCKSEDCTLLSDAECGSGACCDKRTCKIAERGRLCRKSTDQCDFPEFCNGTSEFCVADIKAADLEPCNNETAYCFKGVCQDRDRQCTDLFG KYAKGPNYVCAQEVNLQNDKFGNCHGRCNYSALFCGKAVCYWSFAELVKTDVFDVQYTYLGGQVCVSAHLRVRNDETKDDTYVRDGTICGNGQVCYRGECLRVHVLRGDRECEADDKCQGHGICNNQN NCQCEAGFAPPECDMTPSSPGGSMDDGFWLPLDKSTPLVIKRPGTQYKKGLLISFYVFLPFLIVTAIMVVKQNISKMFGQGEEEFSEGSISEEINDSKQS
hide sequence
Ensembl Acc Id:
ENSRNOP00000023756 ⟸ ENSRNOT00000023756
Ensembl Acc Id:
ENSRNOP00000070106 ⟸ ENSRNOT00000078085
RefSeq Acc Id:
XP_038950720 ⟸ XM_039094792
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_038950721 ⟸ XM_039094793
- Peptide Label:
isoform X2
- UniProtKB:
A6IW31 (UniProtKB/TrEMBL)
RGD ID: 13700178
Promoter ID: EPDNEW_R10700
Type: initiation region
Name: Adam3a_1
Description: ADAM metallopeptidase domain 3A
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 16 72,086,959 - 72,087,019 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2013-03-05
Adam3a
ADAM metallopeptidase domain 3A
Adam3a
ADAM metallopeptidase domain 3A (pseudogene)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2012-07-13
Adam3a
ADAM metallopeptidase domain 3A (pseudogene)
Adam3a
ADAM metallopeptidase domain 3A
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2011-07-28
Adam3a
ADAM metallopeptidase domain 3A
Adam3a
ADAM metallopeptidase domain 3A (cyritestin 1)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-09-24
Adam3a
ADAM metallopeptidase domain 3A (cyritestin 1)
Adam3
ADAM metallopeptidase domain 3
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-09-18
Adam3
ADAM metallopeptidase domain 3
Adam3
a disintegrin and metallopeptidase domain 3 (cyritestin)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-02-22
Adam3
a disintegrin and metallopeptidase domain 3 (cyritestin)
Adam3
a disintegrin and metalloprotease domain 3 (cyritestin)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2004-09-10
Adam3
a disintegrin and metalloprotease domain 3 (cyritestin)
Symbol and Name status set to approved
1299863
APPROVED
2002-08-07
Adam3
a disintegrin and metalloprotease domain 3 (cyritestin)
Symbol and Name status set to provisional
70820
PROVISIONAL