Adam1a (ADAM metallopeptidase domain 1a) - Rat Genome Database

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Gene: Adam1a (ADAM metallopeptidase domain 1a) Rattus norvegicus
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Symbol: Adam1a
Name: ADAM metallopeptidase domain 1a
RGD ID: 621467
Description: Predicted to enable metalloendopeptidase activity. Involved in male gonad development. Predicted to be located in membrane raft. Predicted to be active in external side of plasma membrane and sperm head plasma membrane. Orthologous to human ADAM1A (ADAM metallopeptidase domain 1A (pseudogene)); INTERACTS WITH (S)-amphetamine; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: a disintegrin and metallopeptidase domain 1a; a disintegrin and metalloprotease domain 1 (fertilin alpha); a disintegrin and metalloproteinase domain 1; a disintegrin and metalloproteinase domain 1 (fertilin alpha); ADAM 1; Adam1; disintegrin and metalloproteinase domain-containing protein 1; fertilin alpha; fertilin subunit alpha; MGC93473; PH-30 alpha; PH-30a
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,674,460 - 40,680,988 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1240,676,918 - 40,684,619 (+)EnsemblGRCr8
mRatBN7.21235,017,433 - 35,020,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,017,315 - 35,020,311 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1236,190,238 - 36,193,105 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,801,446 - 36,804,313 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,853,895 - 35,856,762 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01240,533,731 - 40,536,632 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,533,632 - 40,536,620 (+)Ensemblrn6Rnor6.0
Rnor_5.01242,399,946 - 42,403,868 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41236,151,883 - 36,155,069 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1236,682,101 - 36,684,968 (+)NCBICelera
RGSC_v3.11236,015,270 - 36,018,457 (+)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning and sequence analysis of rat fertilin alpha and beta--developmental expression, processing and immunolocalization. McLaughlin EA, etal., Mol Hum Reprod 1997 Sep;3(9):801-9.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Chronological gene expression of ADAMs during testicular development: prespermatogonia (gonocytes) express fertilin beta (ADAM2). Rosselot C, etal., Dev Dyn. 2003 Jul;227(3):458-67.
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15194697  


Genomics

Comparative Map Data
Adam1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,674,460 - 40,680,988 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1240,676,918 - 40,684,619 (+)EnsemblGRCr8
mRatBN7.21235,017,433 - 35,020,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,017,315 - 35,020,311 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1236,190,238 - 36,193,105 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,801,446 - 36,804,313 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,853,895 - 35,856,762 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01240,533,731 - 40,536,632 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,533,632 - 40,536,620 (+)Ensemblrn6Rnor6.0
Rnor_5.01242,399,946 - 42,403,868 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41236,151,883 - 36,155,069 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1236,682,101 - 36,684,968 (+)NCBICelera
RGSC_v3.11236,015,270 - 36,018,457 (+)NCBI
Cytogenetic Map12q16NCBI
ADAM1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812111,899,063 - 111,901,902 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12111,899,263 - 111,901,391 (+)Ensemblhg38GRCh38
GRCh3712112,336,867 - 112,339,706 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612110,821,350 - 110,823,989 (+)NCBIBuild 36Build 36hg18NCBI36
Celera12111,962,428 - 111,965,067 (+)NCBICelera
Cytogenetic Map12q24.12-q24.13NCBI
HuRef12109,350,284 - 109,353,123 (+)NCBIHuRef
CHM1_112112,304,798 - 112,307,637 (+)NCBICHM1_1
T2T-CHM13v2.012111,875,972 - 111,878,811 (+)NCBIT2T-CHM13v2.0
Adam1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,656,667 - 121,659,758 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,656,639 - 121,660,134 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385121,518,604 - 121,521,695 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,518,576 - 121,545,482 (-)Ensemblmm10GRCm38
MGSCv375121,968,613 - 121,971,704 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365119,581,839 - 119,584,930 (-)NCBIMGSCv36mm8
MGSCv365121,779,221 - 121,782,312 (-)NCBIMGSCv36mm8
Celera5118,608,591 - 118,611,529 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.84NCBI

Variants

.
Variants in Adam1a
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:15
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000001818
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123424347543352593Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
BF388151  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21235,020,069 - 35,020,250 (+)MAPPERmRatBN7.2
Rnor_6.01240,536,402 - 40,536,582NCBIRnor6.0
Rnor_5.01242,403,638 - 42,403,818UniSTSRnor5.0
RGSC_v3.41236,154,839 - 36,155,019UniSTSRGSC3.4
Celera1236,684,738 - 36,684,918UniSTS
RH 3.4 Map12613.2UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 88 59 6 351 188 11 140 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1240,678,010 - 40,681,067 (+)Ensembl
mRatBN7.2 Ensembl1235,017,315 - 35,020,311 (+)Ensembl
Rnor_6.0 Ensembl1240,533,632 - 40,536,620 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000128427   ⟹   ENSRNOP00000100286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1240,677,377 - 40,683,138 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137414   ⟹   ENSRNOP00000102568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1240,676,918 - 40,684,619 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163570   ⟹   ENSRNOP00000107414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1240,676,918 - 40,683,278 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163633   ⟹   ENSRNOP00000109440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1240,677,377 - 40,683,488 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164043   ⟹   ENSRNOP00000101797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1240,678,010 - 40,682,198 (+)Ensembl
RefSeq Acc Id: NM_020078   ⟹   NP_064463
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81240,678,121 - 40,680,988 (+)NCBI
mRatBN7.21235,017,433 - 35,020,300 (+)NCBI
Rnor_6.01240,533,731 - 40,536,632 (+)NCBI
Rnor_5.01242,399,946 - 42,403,868 (+)NCBI
RGSC_v3.41236,151,883 - 36,155,069 (+)RGD
Celera1236,682,101 - 36,684,968 (+)RGD
Sequence:
RefSeq Acc Id: XM_063271602   ⟹   XP_063127672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81240,674,460 - 40,680,986 (+)NCBI
Protein Sequences
Protein RefSeqs NP_064463 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127672 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81807 (Get FASTA)   NCBI Sequence Viewer  
  CAA69908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081520
GenBank Protein P70505 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_064463   ⟸   NM_020078
- Peptide Label: precursor
- UniProtKB: P70505 (UniProtKB/Swiss-Prot),   A0A8I5ZSY2 (UniProtKB/TrEMBL),   Q66HK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_063127672   ⟸   XM_063271602
- Peptide Label: isoform X1
- UniProtKB: P70505 (UniProtKB/Swiss-Prot),   A0A8I5ZSY2 (UniProtKB/TrEMBL),   Q66HK9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109440   ⟸   ENSRNOT00000163633
Ensembl Acc Id: ENSRNOP00000100286   ⟸   ENSRNOT00000128427
Ensembl Acc Id: ENSRNOP00000107414   ⟸   ENSRNOT00000163570
Ensembl Acc Id: ENSRNOP00000101797   ⟸   ENSRNOT00000164043
Ensembl Acc Id: ENSRNOP00000102568   ⟸   ENSRNOT00000137414
Protein Domains
Disintegrin   EGF-like   Peptidase M12B

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70505-F1-model_v2 AlphaFold P70505 1-789 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621467 AgrOrtholog
BioCyc Gene G2FUF-19214 BioCyc
Ensembl Genes ENSRNOG00000001347 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000001818 ENTREZGENE
Gene3D-CATH 3.40.390.10 UniProtKB/Swiss-Prot
  4.10.70.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132493 IMAGE-MGC_LOAD
InterPro ADAM_Cys-rich UniProtKB/Swiss-Prot
  Blood-coag_inhib_Disintegrin UniProtKB/Swiss-Prot
  Disintegrin_CS UniProtKB/Swiss-Prot
  Disintegrin_dom_sf UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  MetalloPept_cat_dom UniProtKB/Swiss-Prot
  Peptidase_M12B UniProtKB/Swiss-Prot
  Reprolysin_adamalysin UniProtKB/Swiss-Prot
KEGG Report rno:56777 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93473 IMAGE-MGC_LOAD
NCBI Gene 56777 ENTREZGENE
PANTHER ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN UniProtKB/Swiss-Prot
  DISINTEGRIN AND METALLOPROTEINASE DOMAIN-CONTAINING PROTEIN 1A-RELATED UniProtKB/Swiss-Prot
Pfam ADAM_CR UniProtKB/Swiss-Prot
  Disintegrin UniProtKB/Swiss-Prot
  Reprolysin UniProtKB/Swiss-Prot
PhenoGen Adam1a PhenoGen
PRINTS DISINTEGRIN UniProtKB/Swiss-Prot
PROSITE ADAM_MEPRO UniProtKB/Swiss-Prot
  DISINTEGRIN_1 UniProtKB/Swiss-Prot
  DISINTEGRIN_2 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  ZINC_PROTEASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001347 RatGTEx
SMART ACR UniProtKB/Swiss-Prot
  DISIN UniProtKB/Swiss-Prot
Superfamily-SCOP Disintegrin UniProtKB/Swiss-Prot
  Metalloproteases ('zincins'), catalytic domain UniProtKB/Swiss-Prot
UniProt A0A8I5ZSY2 ENTREZGENE, UniProtKB/TrEMBL
  ADAM1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q66HK9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-22 Adam1a  ADAM metallopeptidase domain 1a  Adam1a  ADAM metallopeptidase domain 1A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-07-13 Adam1a  ADAM metallopeptidase domain 1A  Adam1a  a disintegrin and metallopeptidase domain 1a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Adam1a  a disintegrin and metallopeptidase domain 1a  Adam1  a disintegrin and metalloproteinase domain 1 (fertilin alpha)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Adam1  a disintegrin and metalloproteinase domain 1 (fertilin alpha)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in testis during all developmental stages tested 68863