Bod1l1 (biorientation of chromosomes in cell division 1-like 1) - Rat Genome Database

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Gene: Bod1l1 (biorientation of chromosomes in cell division 1-like 1) Rattus norvegicus
Analyze
Symbol: Bod1l1
Name: biorientation of chromosomes in cell division 1-like 1
RGD ID: 621413
Description: Predicted to be involved in DNA damage response and replication fork processing. Predicted to be located in nucleoplasm. Predicted to be part of Set1C/COMPASS complex. Orthologous to human BOD1L1 (biorientation of chromosomes in cell division 1 like 1); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Abp-10; Abp10; annexin V-binding protein ABP-10; biorientation of chromosomes in cell division protein 1-like 1; Bod1l
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81473,320,880 - 73,375,662 (+)NCBIGRCr8
mRatBN7.21469,108,483 - 69,163,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1469,108,491 - 69,162,490 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01473,738,137 - 73,792,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1473,738,137 - 73,791,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01473,755,135 - 73,805,958 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1468,041,194 - 68,096,023 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Molecular cloning and characterization of annexin V-binding proteins with highly hydrophilic peptide structure. Ohsawa K, etal., J Neurochem 1996 Jul;67(1):89-97.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26166705  


Genomics

Comparative Map Data
Bod1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81473,320,880 - 73,375,662 (+)NCBIGRCr8
mRatBN7.21469,108,483 - 69,163,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1469,108,491 - 69,162,490 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01473,738,137 - 73,792,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1473,738,137 - 73,791,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01473,755,135 - 73,805,958 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1468,041,194 - 68,096,023 (+)NCBICelera
Cytogenetic Map14q21NCBI
BOD1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38413,568,738 - 13,627,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl413,568,738 - 13,627,725 (-)EnsemblGRCh38hg38GRCh38
GRCh37413,570,362 - 13,629,349 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36413,179,464 - 13,238,426 (-)NCBINCBI36Build 36hg18NCBI36
Build 34413,282,325 - 13,305,597NCBI
Celera414,036,574 - 14,095,541 (-)NCBICelera
Cytogenetic Map4p15.33NCBI
HuRef412,908,016 - 12,967,039 (-)NCBIHuRef
CHM1_1413,568,964 - 13,627,876 (-)NCBICHM1_1
T2T-CHM13v2.0413,548,429 - 13,607,428 (-)NCBIT2T-CHM13v2.0
Bod1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39541,944,881 - 42,001,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl541,944,881 - 42,001,658 (-)EnsemblGRCm39 Ensembl
GRCm38541,787,538 - 41,844,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl541,787,538 - 41,844,315 (-)EnsemblGRCm38mm10GRCm38
MGSCv37542,178,777 - 42,235,554 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36542,075,680 - 42,132,563 (-)NCBIMGSCv36mm8
Celera539,246,969 - 39,303,754 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map522.58NCBI
Bod1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495548010,142,739 - 10,189,322 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495548010,143,053 - 10,189,194 (+)NCBIChiLan1.0ChiLan1.0
BOD1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2313,825,244 - 13,884,431 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1414,023,863 - 14,082,864 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v047,986,005 - 8,045,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1413,286,552 - 13,345,458 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl413,294,884 - 13,345,519 (-)Ensemblpanpan1.1panPan2
BOD1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1366,465,813 - 66,520,414 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl366,474,570 - 66,519,777 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha368,989,129 - 69,043,744 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0367,069,729 - 67,124,447 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl367,069,124 - 67,124,536 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1366,447,171 - 66,502,047 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0366,640,502 - 66,695,141 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0367,009,986 - 67,064,994 (+)NCBIUU_Cfam_GSD_1.0
Bod1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528560,225,913 - 60,274,041 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647713,930,161 - 13,974,589 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647713,927,605 - 13,975,722 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BOD1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl89,197,043 - 9,254,485 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.189,197,064 - 9,254,422 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.288,734,590 - 8,791,839 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BOD1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12736,560,501 - 36,619,215 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2736,560,749 - 36,620,191 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604783,308,231 - 83,367,138 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bod1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475518,000,318 - 18,057,449 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475518,000,192 - 18,055,372 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bod1l1
158 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:42
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000070998
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat

Markers in Region
RH144484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21469,140,581 - 69,140,800 (+)MAPPERmRatBN7.2
Rnor_6.01473,770,194 - 73,770,412NCBIRnor6.0
Rnor_5.01473,783,611 - 73,783,829UniSTSRnor5.0
Celera1468,073,358 - 68,073,576UniSTS
AI548807  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21469,162,823 - 69,163,024 (+)MAPPERmRatBN7.2
Rnor_6.01473,792,504 - 73,792,704NCBIRnor6.0
Rnor_5.01473,805,527 - 73,805,727UniSTSRnor5.0
Celera1468,095,592 - 68,095,792UniSTS
RH138097  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21469,131,864 - 69,132,038 (+)MAPPERmRatBN7.2
Rnor_6.01473,761,397 - 73,761,570NCBIRnor6.0
Rnor_5.01473,774,814 - 73,774,987UniSTSRnor5.0
Celera1468,064,640 - 68,064,813UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 22 28 12 19 12 1 1 74 31 37 11 1
Low 21 29 29 29 7 10 4 4 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000070998   ⟹   ENSRNOP00000067163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1469,108,491 - 69,162,490 (+)Ensembl
Rnor_6.0 Ensembl1473,738,137 - 73,791,656 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099934   ⟹   ENSRNOP00000087813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1469,108,491 - 69,162,490 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107880   ⟹   ENSRNOP00000084437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1469,114,350 - 69,162,490 (+)Ensembl
RefSeq Acc Id: XM_039092813   ⟹   XP_038948741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
mRatBN7.21469,108,483 - 69,163,255 (+)NCBI
RefSeq Acc Id: XM_039092814   ⟹   XP_038948742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
mRatBN7.21469,108,623 - 69,163,255 (+)NCBI
RefSeq Acc Id: XM_039092815   ⟹   XP_038948743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
mRatBN7.21469,108,483 - 69,163,255 (+)NCBI
RefSeq Acc Id: XM_039092816   ⟹   XP_038948744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
mRatBN7.21469,108,623 - 69,163,255 (+)NCBI
RefSeq Acc Id: XM_039092817   ⟹   XP_038948745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
mRatBN7.21469,108,483 - 69,163,255 (+)NCBI
RefSeq Acc Id: XM_039092818   ⟹   XP_038948746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
mRatBN7.21469,108,483 - 69,163,255 (+)NCBI
RefSeq Acc Id: XM_063273779   ⟹   XP_063129849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81473,320,880 - 73,375,662 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000067163   ⟸   ENSRNOT00000070998
RefSeq Acc Id: XP_038948741   ⟸   XM_039092813
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948743   ⟸   XM_039092815
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A1A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948745   ⟸   XM_039092817
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A1A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948746   ⟸   XM_039092818
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A1A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948742   ⟸   XM_039092814
- Peptide Label: isoform X2
- UniProtKB: M0RC54 (UniProtKB/TrEMBL),   A0A8I6A1A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948744   ⟸   XM_039092816
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A9H5 (UniProtKB/TrEMBL),   A0A8I6A1A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000084437   ⟸   ENSRNOT00000107880
RefSeq Acc Id: ENSRNOP00000087813   ⟸   ENSRNOT00000099934
RefSeq Acc Id: XP_063129849   ⟸   XM_063273779
- Peptide Label: isoform X7

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621413 AgrOrtholog
BioCyc Gene G2FUF-15480 BioCyc
Ensembl Genes ENSRNOG00000050437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000070998.3 UniProtKB/TrEMBL
  ENSRNOT00000099934.1 UniProtKB/TrEMBL
  ENSRNOT00000107880.1 UniProtKB/TrEMBL
InterPro BOD1L1 UniProtKB/TrEMBL
NCBI Gene 207118 ENTREZGENE
PANTHER BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 LIKE 1 UniProtKB/TrEMBL
  PTHR47391 UniProtKB/TrEMBL
Pfam COMPASS-Shg1 UniProtKB/TrEMBL
PhenoGen Bod1l1 PhenoGen
RatGTEx ENSRNOG00000050437 RatGTEx
UniProt A0A8I6A1A3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9H5 ENTREZGENE, UniProtKB/TrEMBL
  M0RC54 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-01 Bod1l1  biorientation of chromosomes in cell division 1-like 1  Bod1l  biorientation of chromosomes in cell division 1-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-31 Bod1l  biorientation of chromosomes in cell division 1-like 1  Abp10  annexin V-binding protein ABP-10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-08-07 Abp10  annexin V-binding protein ABP-10      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in embryonic brain 631943
gene_homology deduced amino acid sequence homologous to human X-linked Helicase2 (XH2) and DNA (cytosine-5) methyltransferase (DMTase) 631943
gene_physical_interaction Ca2+ - and phospholipid-dependent binding to annexin V 631943