Reg3a (regenerating islet-derived 3 alpha) - Rat Genome Database

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Gene: Reg3a (regenerating islet-derived 3 alpha) Rattus norvegicus
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Symbol: Reg3a
Name: regenerating islet-derived 3 alpha
RGD ID: 621401
Description: Predicted to enable oligosaccharide binding activity; peptidoglycan binding activity; and signaling receptor activity. Predicted to be involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; negative regulation of keratinocyte differentiation; and positive regulation of keratinocyte proliferation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Used to study acute pancreatitis. Orthologous to human REG3A (regenerating family member 3 alpha) and REG3G (regenerating family member 3 gamma).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: islet of Langerhans regenerating protein 3; lithostathine 3; pancreatitis-associated protein 2; Pap2; PapII; REG 3; reg III-alpha; REG-3-alpha; regenerating islet-derived protein 3 alpha; regenerating islet-derived protein 3-alpha; regenerating islet-derived protein III-alpha; regIII
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84112,430,397 - 112,433,163 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4112,430,424 - 112,433,163 (+)EnsemblGRCr8
mRatBN7.24110,872,398 - 110,875,157 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4110,872,425 - 110,875,157 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4116,277,957 - 116,280,723 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04112,053,058 - 112,055,824 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04110,673,253 - 110,676,019 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04109,477,893 - 109,480,659 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4109,477,920 - 109,480,659 (+)Ensemblrn6Rnor6.0
Rnor_5.04174,183,721 - 174,186,487 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44112,366,001 - 112,368,767 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera499,904,353 - 99,907,119 (+)NCBICelera
RGSC_v3.14112,610,508 - 112,613,239 (+)NCBI
Cytogenetic Map4q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of a second rat pancreatitis-associated protein. Messenger RNA cloning, gene structure, and expression during acute pancreatitis. Frigerio JM, etal., Biochemistry 1993 Sep 7;32(35):9236-41.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Structure and expression of a novel rat RegIII gene. Suzuki Y, etal., Gene 1994 Jul 8;144(2):315-6.
8. Administration of anti-Reg I and anti-PAPII antibodies worsens pancreatitis. Viterbo D, etal., JOP. 2009 Jan 8;10(1):15-23.
Additional References at PubMed
PMID:8889548   PMID:15100001   PMID:18437087   PMID:18641332   PMID:18641333   PMID:21926556   PMID:22727489   PMID:23303201   PMID:23370676   PMID:24465846   PMID:28415799  


Genomics

Comparative Map Data
Reg3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84112,430,397 - 112,433,163 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4112,430,424 - 112,433,163 (+)EnsemblGRCr8
mRatBN7.24110,872,398 - 110,875,157 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4110,872,425 - 110,875,157 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4116,277,957 - 116,280,723 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04112,053,058 - 112,055,824 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04110,673,253 - 110,676,019 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04109,477,893 - 109,480,659 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4109,477,920 - 109,480,659 (+)Ensemblrn6Rnor6.0
Rnor_5.04174,183,721 - 174,186,487 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44112,366,001 - 112,368,767 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera499,904,353 - 99,907,119 (+)NCBICelera
RGSC_v3.14112,610,508 - 112,613,239 (+)NCBI
Cytogenetic Map4q33NCBI
Reg3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39678,357,692 - 78,360,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl678,357,692 - 78,360,810 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38678,380,709 - 78,383,839 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl678,380,709 - 78,383,827 (+)Ensemblmm10GRCm38
MGSCv37678,330,703 - 78,333,833 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36678,310,218 - 78,313,348 (+)NCBIMGSCv36mm8
Celera680,403,904 - 80,407,034 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map634.76NCBI

Variants

.
Variants in Reg3a
51 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:19
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000008468
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 1 2 22 20 16 5 14 5 30 18 22 1 16 11

Sequence


Ensembl Acc Id: ENSRNOT00000008468   ⟹   ENSRNOP00000008468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4112,430,424 - 112,433,163 (+)Ensembl
mRatBN7.2 Ensembl4110,872,425 - 110,875,157 (+)Ensembl
Rnor_6.0 Ensembl4109,477,920 - 109,480,659 (+)Ensembl
RefSeq Acc Id: NM_001145846   ⟹   NP_001139318
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84112,430,397 - 112,433,163 (+)NCBI
mRatBN7.24110,872,398 - 110,875,157 (+)NCBI
Rnor_6.04109,477,893 - 109,480,659 (+)NCBI
Rnor_5.04174,183,721 - 174,186,487 (+)NCBI
RGSC_v3.44112,366,001 - 112,368,767 (+)RGD
Celera499,904,353 - 99,907,119 (+)RGD
Sequence:
RefSeq Acc Id: NM_172077   ⟹   NP_742074
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84112,430,424 - 112,433,163 (+)NCBI
mRatBN7.24110,872,425 - 110,875,157 (+)NCBI
Rnor_6.04109,477,920 - 109,480,659 (+)NCBI
Rnor_5.04174,183,721 - 174,186,487 (+)NCBI
RGSC_v3.44112,366,001 - 112,368,767 (+)RGD
Celera499,904,380 - 99,907,119 (+)NCBI
Sequence:
RefSeq Acc Id: NP_742074   ⟸   NM_172077
- Peptide Label: precursor
- UniProtKB: P35231 (UniProtKB/Swiss-Prot),   A0A0G2JSI6 (UniProtKB/TrEMBL),   A6IAG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139318   ⟸   NM_001145846
- Peptide Label: precursor
- UniProtKB: P35231 (UniProtKB/Swiss-Prot),   A0A0G2JSI6 (UniProtKB/TrEMBL),   A6IAG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008468   ⟸   ENSRNOT00000008468
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P35231-F1-model_v2 AlphaFold P35231 1-174 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693154
Promoter ID:EPDNEW_R3678
Type:single initiation site
Name:Reg3a_1
Description:regenerating islet-derived 3 alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04109,478,228 - 109,478,288EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621401 AgrOrtholog
BioCyc Gene G2FUF-44085 BioCyc
Ensembl Genes ENSRNOG00000006360 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000008468 ENTREZGENE
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  C-type_lectin/snaclec_domain UniProtKB/Swiss-Prot
  C-type_lectin_CS UniProtKB/Swiss-Prot
  CTDL_fold UniProtKB/Swiss-Prot
KEGG Report rno:171162 UniProtKB/Swiss-Prot
NCBI Gene 171162 ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/Swiss-Prot
Pfam Lectin_C UniProtKB/Swiss-Prot
PhenoGen Reg3a PhenoGen
PRINTS PNCREATITSAP UniProtKB/Swiss-Prot
PROSITE C_TYPE_LECTIN_1 UniProtKB/Swiss-Prot
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006360 RatGTEx
SMART CLECT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot
UniProt A0A0G2JSI6 ENTREZGENE, UniProtKB/TrEMBL
  A6IAG1 ENTREZGENE, UniProtKB/TrEMBL
  P35231 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Reg3a  regenerating islet-derived 3 alpha  Pap2_mapped  pancreatitis-associated protein 2 (mapped)  Data merged from RGD:3255 1643240 APPROVED
2005-11-17 Pap2_mapped  pancreatitis-associated protein 2 (mapped)  Pap2  pancreatitis-associated protein 2  Symbol and Name updated 1556543 APPROVED
2004-09-10 Reg3a  regenerating islet-derived 3 alpha      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Reg3a  regenerating islet-derived 3 alpha      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Pap2  Pancreatitis-associated protein 2      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in regenerating pancreatic islets, but not in normal islets 633798
gene_transcript promoter region contains two glucocorticoid-response elements and one IL-6-response element 633799