Atp5f1e (ATP synthase F1 subunit epsilon) - Rat Genome Database

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Gene: Atp5f1e (ATP synthase F1 subunit epsilon) Rattus norvegicus
Analyze
Symbol: Atp5f1e
Name: ATP synthase F1 subunit epsilon
RGD ID: 621374
Description: Contributes to ATP hydrolysis activity. Predicted to be involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrial inner membrane. Part of proton-transporting ATP synthase complex. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Orthologous to several human genes including ATP5F1E (ATP synthase F1 subunit epsilon); PARTICIPATES IN electron transport chain pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase F(1) complex subunit epsilon, mitochondrial; ATP synthase subunit epsilon, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit; Atp5e; ATPase subunit epsilon
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3183,677,273 - 183,680,214 (-)EnsemblGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)Ensemblrn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(S)-nicotine  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
astemizole  (EXP)
atrazine  (ISO)
benzalkonium chloride  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
captan  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
clofibrate  (EXP,ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
folpet  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydralazine  (ISO)
L-ethionine  (EXP)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
Monobutylphthalate  (ISO)
nicotine  (ISO)
nitrates  (ISO)
omeprazole  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
perfluoroundecanoic acid  (ISO)
pirinixic acid  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
stavudine  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A simple, rapid method for purification of epsilon-subunit, coupling factor 6, subunit d, and subunit e from rat liver H(+)-ATP synthase and determination of the complete amino acid sequence of epsilon-subunit. Higuti T, etal., J Biol Chem. 1992 Nov 5;267(31):22658-61.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1 motor shielded by F(0), Functional significance, and evidence for an involvement of the unique F(0) subunit F(6). Ko YH, etal., J Biol Chem. 2000 Oct 20;275(42):32931-9.
6. Identification of two proteins associated with mammalian ATP synthase. Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Mitochondrial ATP synthase: dramatic Mg2+-induced alterations in the structure and function of the F1-ATPase moiety. Pedersen PL, etal., Biochemistry. 1987 Dec 29;26(26):8631-7.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
17. Cloning, characterization and mapping of the human ATP5E gene, identification of pseudogene ATP5EP1, and definition of the ATP5E motif. Tu Q, etal., Biochem J 2000 Apr 1;347 Pt 1:17-21.
18. PFOS prenatal exposure induce mitochondrial injury and gene expression change in hearts of weaned SD rats. Xia W, etal., Toxicology. 2011 Mar 28;282(1-2):23-9. Epub 2011 Jan 18.
Additional References at PubMed
PMID:12110673   PMID:12865426   PMID:14651853   PMID:15489334   PMID:18614015   PMID:20566710   PMID:34800366  


Genomics

Comparative Map Data
Atp5f1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3183,677,273 - 183,680,214 (-)EnsemblGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)Ensemblrn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
ATP5F1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,025,475 - 59,032,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,025,475 - 59,032,358 (-)Ensemblhg38GRCh38
GRCh372057,600,530 - 57,607,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,037,128 - 57,040,817 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342057,037,127 - 57,040,795NCBI
Celera2054,344,154 - 54,347,843 (-)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,390,650 - 54,394,339 (-)NCBIHuRef
CHM1_12057,505,121 - 57,508,810 (-)NCBICHM1_1
T2T-CHM13v2.02060,808,588 - 60,815,448 (-)NCBIT2T-CHM13v2.0
Atp5f1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,302,868 - 174,305,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,302,865 - 174,305,898 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382174,461,075 - 174,464,101 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,461,072 - 174,464,105 (-)Ensemblmm10GRCm38
MGSCv372174,286,576 - 174,289,602 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362174,085,123 - 174,107,033 (-)NCBIMGSCv36mm8
Celera2180,421,820 - 180,424,850 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.95NCBI
Atp5f1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)Ensembl
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBIChiLan1.0ChiLan1.0
ATP5F1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,740,739 - 56,744,429 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)EnsemblpanPan2panpan1.1
ATP5F1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,770,646 - 43,772,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,772,120 - 43,772,680 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2443,016,498 - 43,019,991 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02444,636,529 - 44,640,022 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,636,530 - 44,639,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,740,041 - 43,743,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,858,740 - 43,862,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,518,590 - 44,522,082 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp5f1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,793,162 - 181,796,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,509,605 - 1,513,175 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,509,605 - 1,513,033 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11759,163,085 - 59,174,488 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,541,057 - 66,544,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,109,902 - 5,113,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,109,941 - 5,113,566 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605053,161,497 - 53,165,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,319,949 - 25,323,769 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474125,319,949 - 25,323,819 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Atp5f1e
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15143,515,096 - 143,518,061 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:89
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000071913
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat

Markers in Region
BI280365  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21477,863,644 - 77,863,825 (+)MAPPERmRatBN7.2
mRatBN7.23163,259,116 - 163,260,557 (+)MAPPERmRatBN7.2
Rnor_6.03172,563,150 - 172,564,590NCBIRnor6.0
Rnor_6.01483,220,339 - 83,220,519NCBIRnor6.0
Rnor_5.01483,907,181 - 83,907,361UniSTSRnor5.0
Rnor_5.03178,609,156 - 178,610,596UniSTSRnor5.0
RGSC_v3.41483,615,693 - 83,615,873UniSTSRGSC3.4
Celera1476,779,231 - 76,779,411UniSTS
Celera3162,432,501 - 162,433,941UniSTS
RH 3.4 Map14514.17UniSTS
Cytogenetic Map14q21UniSTS
RH141286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23163,263,089 - 163,263,299 (+)MAPPERmRatBN7.2
Rnor_6.03172,567,123 - 172,567,332NCBIRnor6.0
Rnor_5.03178,613,129 - 178,613,338UniSTSRnor5.0
Celera3162,436,474 - 162,436,683UniSTS
RH 3.4 Map31496.9UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_139099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF010323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071913   ⟹   ENSRNOP00000067815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3183,677,273 - 183,680,214 (-)Ensembl
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)Ensembl
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)Ensembl
RefSeq Acc Id: NM_139099   ⟹   NP_620799
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83183,677,270 - 183,680,172 (-)NCBI
mRatBN7.23163,259,072 - 163,261,974 (-)NCBI
Rnor_6.03172,563,105 - 172,566,007 (-)NCBI
Rnor_5.03178,609,111 - 178,612,013 (-)NCBI
Celera3162,432,456 - 162,435,358 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_620799 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB64162 (Get FASTA)   NCBI Sequence Viewer  
  AAH58133 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067815
GenBank Protein P29418 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620799   ⟸   NM_139099
- UniProtKB: P29418 (UniProtKB/Swiss-Prot),   A6KL35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067815   ⟸   ENSRNOT00000071913

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29418-F1-model_v2 AlphaFold P29418 1-51 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692722
Promoter ID:EPDNEW_R3247
Type:initiation region
Name:Atp5f1e_1
Description:ATP synthase F1 subunit epsilon
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03172,566,040 - 172,566,100EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621374 AgrOrtholog
BioCyc Gene G2FUF-46450 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000049912 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000071913 ENTREZGENE
Gene3D-CATH 1.10.1620.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887013 IMAGE-MGC_LOAD
InterPro ATP_synth_F1_esu_mt UniProtKB/Swiss-Prot
  ATP_synth_F1_esu_sf_mt UniProtKB/Swiss-Prot
KEGG Report rno:245958 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72679 IMAGE-MGC_LOAD
NCBI Gene 245958 ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR12448 UniProtKB/Swiss-Prot
Pfam ATP-synt_Eps UniProtKB/Swiss-Prot
PhenoGen Atp5f1e PhenoGen
RatGTEx ENSRNOG00000049912 RatGTEx
Superfamily-SCOP SSF48690 UniProtKB/Swiss-Prot
UniProt A0A8L2QYI5_RAT UniProtKB/TrEMBL
  A6KL35 ENTREZGENE, UniProtKB/TrEMBL
  ATP5E_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-30 Atp5f1e  ATP synthase F1 subunit epsilon  Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit      Symbol and Name status set to provisional 70820 PROVISIONAL