Stag3 (STAG3 cohesin complex component) - Rat Genome Database

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Gene: Stag3 (STAG3 cohesin complex component) Rattus norvegicus
Analyze
Symbol: Stag3
Name: STAG3 cohesin complex component
RGD ID: 621333
Description: Predicted to enable chromatin binding activity. Predicted to be involved in establishment of meiotic sister chromatid cohesion. Predicted to act upstream of or within homologous chromosome pairing at meiosis and protein localization to chromosome. Predicted to be located in lateral element; male germ cell nucleus; and transverse filament. Predicted to be part of meiotic cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 8 and spermatogenic failure 61. Orthologous to human STAG3 (STAG3 cohesin complex component); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cohesin subunit SA-3; cohesin subunit SA-3-like; LOC102553065; SCC3 homolog 3; stromal antigen 3; stromalin 3; stromalin-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,398,291 - 22,428,548 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1222,398,295 - 22,428,557 (+)EnsemblGRCr8
mRatBN7.21217,284,677 - 17,314,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,284,794 - 17,314,935 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1218,251,836 - 18,281,954 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,875,558 - 18,905,676 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,928,975 - 17,959,093 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,599,741 - 19,630,775 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,599,834 - 19,630,780 (+)Ensemblrn6Rnor6.0
Rnor_5.01221,656,406 - 21,686,863 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41217,865,273 - 17,896,993 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1219,209,251 - 19,239,357 (+)NCBICelera
RGSC_v3.11217,854,794 - 17,886,514 (+)NCBI
Cytogenetic Map12q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IBA,IEA)
chromosome  (IEA)
cohesin complex  (IEA)
condensed nuclear chromosome  (IEA,ISO)
lateral element  (IEA,ISO)
male germ cell nucleus  (IEA,ISO)
meiotic cohesin complex  (IBA,IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA)
synaptonemal complex  (IEA,ISO,TAS)
transverse filament  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Evaluation of the Stag3 gene and the synaptonemal complex in a rat model (as/as) for male infertility. Bayes M, etal., Mol Reprod Dev 2001 Nov;60(3):414-7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10698974   PMID:15870106   PMID:17696610   PMID:21242291   PMID:21527826   PMID:22164254   PMID:22664934   PMID:22711701   PMID:24797475  


Genomics

Comparative Map Data
Stag3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,398,291 - 22,428,548 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1222,398,295 - 22,428,557 (+)EnsemblGRCr8
mRatBN7.21217,284,677 - 17,314,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,284,794 - 17,314,935 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1218,251,836 - 18,281,954 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,875,558 - 18,905,676 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,928,975 - 17,959,093 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,599,741 - 19,630,775 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,599,834 - 19,630,780 (+)Ensemblrn6Rnor6.0
Rnor_5.01221,656,406 - 21,686,863 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41217,865,273 - 17,896,993 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1219,209,251 - 19,239,357 (+)NCBICelera
RGSC_v3.11217,854,794 - 17,886,514 (+)NCBI
Cytogenetic Map12q11NCBI
STAG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,177,724 - 100,219,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,177,563 - 100,214,387 (+)Ensemblhg38GRCh38
GRCh37799,775,347 - 99,812,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,613,474 - 99,649,946 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34799,420,188 - 99,456,661NCBI
Celera794,510,888 - 94,547,361 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,410,283 - 94,446,767 (+)NCBIHuRef
CHM1_1799,705,616 - 99,742,079 (+)NCBICHM1_1
T2T-CHM13v2.07101,417,534 - 101,459,147 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,135,619 - 99,172,096 (+)NCBI
Stag3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,270,757 - 138,310,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,278,502 - 138,310,655 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385138,272,514 - 138,312,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,280,240 - 138,312,393 (+)Ensemblmm10GRCm38
MGSCv375138,721,737 - 138,753,621 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365138,510,339 - 138,542,181 (+)NCBIMGSCv36mm8
Celera5135,263,360 - 135,295,714 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.01NCBI
Stag3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573602,016 - 630,936 (-)Ensembl
ChiLan1.0NW_004955573602,635 - 631,775 (-)NCBIChiLan1.0ChiLan1.0
STAG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,096,086 - 118,133,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,360,718 - 166,397,948 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,215,064 - 92,249,202 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,645,413 - 105,682,220 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,648,425 - 105,681,850 (+)EnsemblpanPan2panpan1.1
STAG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,326,402 - 9,354,049 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,326,448 - 9,353,204 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha611,030,377 - 11,058,041 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.069,260,281 - 9,287,741 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,260,338 - 9,286,897 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,112,910 - 9,140,199 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,091,601 - 9,119,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,272,833 - 9,300,317 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stag3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,578,049 - 133,603,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543432,552 - 458,112 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936543430,804 - 458,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,175,915 - 8,211,889 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.138,175,908 - 8,211,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,310,188 - 7,346,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,853,456 - 12,893,098 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,853,404 - 12,891,638 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660703,388,692 - 3,427,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stag3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,707,999 - 16,732,537 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474016,706,695 - 16,734,142 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Stag3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11615,993,255 - 16,023,459 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stag3
199 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:36
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000042006
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)122013902826430640Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
D12Rat29  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81222,424,290 - 22,424,457 (+)Marker Load Pipeline
mRatBN7.21217,310,678 - 17,310,845 (+)MAPPERmRatBN7.2
Rnor_6.01219,626,515 - 19,626,681NCBIRnor6.0
Rnor_5.01221,682,606 - 21,682,772UniSTSRnor5.0
RGSC_v3.41217,892,735 - 17,892,902RGDRGSC3.4
RGSC_v3.41217,892,736 - 17,892,902UniSTSRGSC3.4
Celera1219,235,112 - 19,235,266UniSTS
RGSC_v3.11217,882,258 - 17,882,424RGD
RH 3.4 Map12250.2UniSTS
RH 3.4 Map12250.2RGD
RH 2.0 Map12181.0RGD
SHRSP x BN Map1221.58RGD
Cytogenetic Map12q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 8 44 155 57 57 26 48 26 6 221 121 10 132 54 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000042006   ⟹   ENSRNOP00000041918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1222,398,297 - 22,428,547 (+)Ensembl
mRatBN7.2 Ensembl1217,284,794 - 17,314,935 (+)Ensembl
Rnor_6.0 Ensembl1219,599,960 - 19,630,771 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092039   ⟹   ENSRNOP00000072692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1219,599,834 - 19,630,780 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127131   ⟹   ENSRNOP00000103947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1222,398,301 - 22,428,557 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000162804   ⟹   ENSRNOP00000110662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1222,398,295 - 22,428,550 (+)Ensembl
RefSeq Acc Id: NM_053730   ⟹   NP_446182
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,408 - 22,428,548 (+)NCBI
mRatBN7.21217,284,794 - 17,314,936 (+)NCBI
Rnor_6.01219,599,960 - 19,630,772 (+)NCBI
Rnor_5.01221,656,406 - 21,686,863 (+)NCBI
RGSC_v3.41217,865,273 - 17,896,993 (+)RGD
Celera1219,209,251 - 19,239,357 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249020   ⟹   XP_006249082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,291 - 22,428,548 (+)NCBI
mRatBN7.21217,284,677 - 17,314,936 (+)NCBI
Rnor_6.01219,599,863 - 19,630,775 (+)NCBI
Rnor_5.01221,656,406 - 21,686,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089015   ⟹   XP_038944943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,297 - 22,428,548 (+)NCBI
mRatBN7.21217,284,677 - 17,314,936 (+)NCBI
RefSeq Acc Id: XM_039089016   ⟹   XP_038944944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,754 - 22,428,548 (+)NCBI
mRatBN7.21217,285,149 - 17,314,936 (+)NCBI
RefSeq Acc Id: XM_039089017   ⟹   XP_038944945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,499 - 22,428,548 (+)NCBI
mRatBN7.21217,284,979 - 17,314,936 (+)NCBI
RefSeq Acc Id: XM_039089018   ⟹   XP_038944946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,291 - 22,428,548 (+)NCBI
mRatBN7.21217,284,677 - 17,314,936 (+)NCBI
RefSeq Acc Id: XM_063270988   ⟹   XP_063127058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,398,300 - 22,428,548 (+)NCBI
RefSeq Acc Id: NP_446182   ⟸   NM_053730
- UniProtKB: Q99M76 (UniProtKB/Swiss-Prot),   A6KSU8 (UniProtKB/TrEMBL),   A6KSU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249082   ⟸   XM_006249020
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000072692   ⟸   ENSRNOT00000092039
Ensembl Acc Id: ENSRNOP00000041918   ⟸   ENSRNOT00000042006
RefSeq Acc Id: XP_038944946   ⟸   XM_039089018
- Peptide Label: isoform X2
- UniProtKB: A6KSU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944943   ⟸   XM_039089015
- Peptide Label: isoform X1
- UniProtKB: Q99M76 (UniProtKB/Swiss-Prot),   A6KSU8 (UniProtKB/TrEMBL),   A6KSU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944945   ⟸   XM_039089017
- Peptide Label: isoform X1
- UniProtKB: Q99M76 (UniProtKB/Swiss-Prot),   A6KSU8 (UniProtKB/TrEMBL),   A6KSU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944944   ⟸   XM_039089016
- Peptide Label: isoform X1
- UniProtKB: Q99M76 (UniProtKB/Swiss-Prot),   A6KSU8 (UniProtKB/TrEMBL),   A6KSU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127058   ⟸   XM_063270988
- Peptide Label: isoform X2
- UniProtKB: A6KSU9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103947   ⟸   ENSRNOT00000127131
Ensembl Acc Id: ENSRNOP00000110662   ⟸   ENSRNOT00000162804
Protein Domains
SCD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99M76-F1-model_v2 AlphaFold Q99M76 1-1256 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698504
Promoter ID:EPDNEW_R9027
Type:multiple initiation site
Name:Stag3_1
Description:stromal antigen 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01219,599,847 - 19,599,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621333 AgrOrtholog
BioCyc Gene G2FUF-19773 BioCyc
Ensembl Genes ENSRNOG00000001360 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000042006 ENTREZGENE
  ENSRNOT00000042006.5 UniProtKB/Swiss-Prot
  ENSRNOT00000127131 ENTREZGENE
  ENSRNOT00000162804 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Cohesin_Scc3/SA UniProtKB/Swiss-Prot
  HEAT_SCC3-SA UniProtKB/Swiss-Prot
  SCD UniProtKB/Swiss-Prot
  STAG UniProtKB/Swiss-Prot
KEGG Report rno:114522 UniProtKB/Swiss-Prot
NCBI Gene 114522 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-3 UniProtKB/Swiss-Prot
  PTHR11199 UniProtKB/Swiss-Prot
Pfam HEAT_SCC3-SA UniProtKB/Swiss-Prot
  SCD UniProtKB/Swiss-Prot
  STAG UniProtKB/Swiss-Prot
PhenoGen Stag3 PhenoGen
PROSITE SCD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001360 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt A0ABK0LRQ6_RAT UniProtKB/TrEMBL
  A0ABK0M2W7_RAT UniProtKB/TrEMBL
  A6KSU8 ENTREZGENE, UniProtKB/TrEMBL
  A6KSU9 ENTREZGENE, UniProtKB/TrEMBL
  Q99M76 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Stag3  STAG3 cohesin complex component  Stag3  stromal antigen 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-03-09 Stag3  stromal antigen 3  LOC102553065  cohesin subunit SA-3-like  Data merged from RGD:7729409 737654 PROVISIONAL
2013-12-18 LOC102553065  cohesin subunit SA-3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-02-26 Stag3  stromal antigen 3      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Stag3  stromal antigen 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains a polymorphic hexanucleotide repeat doamin 727325
gene_homology aa sequence shares 93% identity with mouse Stag3, and 77% with human STAG3 727325
gene_product member of the stromalin protein family 727325
gene_protein predicted protein contains 1256 aa residues 727325