Arl5a (ARF like GTPase 5A) - Rat Genome Database

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Gene: Arl5a (ARF like GTPase 5A) Rattus norvegicus
Analyze
Symbol: Arl5a
Name: ARF like GTPase 5A (Ensembl:ADP-ribosylation factor like GTPase 5A)
RGD ID: 621327
Description: Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5A (ARF like GTPase 5A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADP-ribosylation factor like GTPase 5A; ADP-ribosylation factor-like 5; ADP-ribosylation factor-like 5A; ADP-ribosylation factor-like protein 5A; Arl5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8357,287,599 - 57,312,488 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl357,289,846 - 57,312,488 (-)EnsemblGRCr8
mRatBN7.2336,878,461 - 36,903,362 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl336,880,712 - 36,903,211 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx340,267,972 - 40,288,877 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0348,852,750 - 48,873,658 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0346,637,309 - 46,658,237 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0337,922,544 - 37,947,434 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,924,793 - 37,947,283 (-)Ensemblrn6Rnor6.0
Rnor_5.0343,026,193 - 43,047,118 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4333,905,755 - 33,926,681 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera335,024,333 - 35,045,257 (-)NCBICelera
RGSC_v3.1333,800,410 - 33,822,902 (-)NCBI
Cytogenetic Map3q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium dichloride  (ISO)
calciol  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP,ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
haloperidol  (EXP)
hydrogen peroxide  (ISO)
isobutanol  (ISO)
lead(0)  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (EXP)
ochratoxin A  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cloning of a novel member (ARL5) of the ARF-family of Ras-related GTPases. Breiner M, etal., Biochim Biophys Acta 1996 Jul 31;1308(1):1-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25795912  


Genomics

Comparative Map Data
Arl5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8357,287,599 - 57,312,488 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl357,289,846 - 57,312,488 (-)EnsemblGRCr8
mRatBN7.2336,878,461 - 36,903,362 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl336,880,712 - 36,903,211 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx340,267,972 - 40,288,877 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0348,852,750 - 48,873,658 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0346,637,309 - 46,658,237 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0337,922,544 - 37,947,434 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,924,793 - 37,947,283 (-)Ensemblrn6Rnor6.0
Rnor_5.0343,026,193 - 43,047,118 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4333,905,755 - 33,926,681 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera335,024,333 - 35,045,257 (-)NCBICelera
RGSC_v3.1333,800,410 - 33,822,902 (-)NCBI
Cytogenetic Map3q12NCBI
ARL5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382151,798,797 - 151,828,421 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2151,788,984 - 151,828,531 (-)Ensemblhg38GRCh38
GRCh372152,655,311 - 152,684,935 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362152,365,726 - 152,393,255 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342152,484,611 - 152,510,503NCBI
Celera2146,272,160 - 146,299,690 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2144,543,720 - 144,571,242 (-)NCBIHuRef
CHM1_12152,663,024 - 152,690,587 (-)NCBICHM1_1
T2T-CHM13v2.02152,250,228 - 152,279,855 (-)NCBIT2T-CHM13v2.0
Arl5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,287,961 - 52,314,886 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl252,287,963 - 52,314,913 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38252,397,949 - 52,424,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,397,951 - 52,424,901 (-)Ensemblmm10GRCm38
MGSCv37252,253,471 - 52,280,394 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36252,219,960 - 52,246,883 (-)NCBIMGSCv36mm8
Celera254,127,859 - 54,154,901 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
Arl5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,329,450 - 17,361,646 (-)Ensembl
ChiLan1.0NW_00495544017,329,450 - 17,341,836 (-)NCBIChiLan1.0ChiLan1.0
ARL5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21354,470,488 - 54,511,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B54,485,468 - 54,526,631 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B39,092,366 - 39,133,505 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B156,337,533 - 156,368,974 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B156,344,048 - 156,368,974 (-)EnsemblpanPan2panpan1.1
ARL5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11952,949,533 - 52,973,408 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,947,922 - 52,973,406 (-)NCBIcanFam3CanFam3.1
CanFam3.1 Ensembl1952,947,922 - 52,973,406 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2628,675,656 - 28,708,540 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01954,460,665 - 54,493,585 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1954,467,067 - 54,493,507 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,175,806 - 53,208,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,245,457 - 53,278,872 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01954,710,455 - 54,743,297 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arl5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303115,844,085 - 115,867,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646925,750,247 - 25,773,693 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646925,750,247 - 25,773,693 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15467,995 - 498,883 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115467,925 - 498,889 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARL5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11037,206,303 - 37,236,255 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040162,310,303 - 162,342,420 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248665,291,158 - 5,319,841 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248665,291,025 - 5,319,841 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Arl5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1530,176,889 - 30,202,103 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arl5a
108 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:211
Interacting mature miRNAs:267
Transcripts:ENSRNOT00000009181
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)34542360958601291Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)34790417270710963Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)34790417270710963Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)34790417270710963Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat

Markers in Region
RH141305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2336,882,480 - 36,882,681 (+)MAPPERmRatBN7.2
Rnor_6.0337,926,562 - 37,926,762NCBIRnor6.0
Rnor_5.0343,026,246 - 43,026,446UniSTSRnor5.0
RGSC_v3.4333,905,808 - 33,906,008UniSTSRGSC3.4
Celera335,024,386 - 35,024,586UniSTS
RH 3.4 Map3446.82UniSTS
Cytogenetic Map3q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009181   ⟹   ENSRNOP00000009181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl357,289,846 - 57,312,337 (-)Ensembl
mRatBN7.2 Ensembl336,880,712 - 36,903,211 (-)Ensembl
Rnor_6.0 Ensembl337,924,793 - 37,947,283 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl337,926,794 - 37,946,999 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000131204   ⟹   ENSRNOP00000106090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl357,291,565 - 57,312,488 (-)Ensembl
RefSeq Acc Id: NM_053979   ⟹   NP_446431
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8357,291,562 - 57,312,488 (-)NCBI
mRatBN7.2336,882,428 - 36,903,362 (-)NCBI
Rnor_6.0337,926,509 - 37,947,434 (-)NCBI
Rnor_5.0343,026,193 - 43,047,118 (-)NCBI
RGSC_v3.4333,905,755 - 33,926,681 (-)RGD
Celera335,024,333 - 35,045,257 (-)RGD
Sequence:
RefSeq Acc Id: XM_008761696   ⟹   XP_008759918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8357,287,599 - 57,312,188 (-)NCBI
mRatBN7.2336,878,461 - 36,903,053 (-)NCBI
Rnor_6.0337,922,544 - 37,947,172 (-)NCBI
Sequence:
RefSeq Acc Id: NP_446431   ⟸   NM_053979
- UniProtKB: Q4V8N2 (UniProtKB/Swiss-Prot),   P51646 (UniProtKB/Swiss-Prot),   A6JF24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759918   ⟸   XM_008761696
- Peptide Label: isoform X1
- UniProtKB: A6JF25 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009181   ⟸   ENSRNOT00000009181
Ensembl Acc Id: ENSRNOP00000106090   ⟸   ENSRNOT00000131204

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51646-F1-model_v2 AlphaFold P51646 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621327 AgrOrtholog
BioCyc Gene G2FUF-49728 BioCyc
Ensembl Genes ENSRNOG00000006839 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009181 ENTREZGENE
  ENSRNOT00000009181.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7458249 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase_ARF UniProtKB/Swiss-Prot
  Small_GTPase_ARF/SAR UniProtKB/Swiss-Prot
KEGG Report rno:117050 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114279 IMAGE-MGC_LOAD
NCBI Gene 117050 ENTREZGENE
PANTHER PTHR11711 UniProtKB/Swiss-Prot
Pfam Arf UniProtKB/Swiss-Prot
PhenoGen Arl5a PhenoGen
PRINTS SAR1GTPBP UniProtKB/Swiss-Prot
PROSITE ARF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006839 RatGTEx
SMART ARF UniProtKB/Swiss-Prot
  SAR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0ABK0LKD2_RAT UniProtKB/TrEMBL
  A6JF23_RAT UniProtKB/TrEMBL
  A6JF24 ENTREZGENE, UniProtKB/TrEMBL
  A6JF25 ENTREZGENE, UniProtKB/TrEMBL
  ARL5A_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q4V8N2 ENTREZGENE
UniProt Secondary Q4V8N2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-07 Arl5a  ARF like GTPase 5A  Arl5a  ADP-ribosylation factor like GTPase 5A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-19 Arl5a  ADP-ribosylation factor like GTPase 5A  Arl5a  ADP-ribosylation factor-like 5A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Arl5a  ADP-ribosylation factor-like 5A  Arl5  ADP-ribosylation factor-like 5  Symbol and Name updated 1299863 APPROVED
2005-01-20 Arl5  ADP-ribosylation factor-like 5      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Arl5  ADP-ribosylation factor-like 5      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression ubiquitously expressed; enriched in brain, intestine, and thymus 724591