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Gene: Cntn5 (contactin 5) Rattus norvegicus

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Symbol:

Cntn5

Name:

contactin 5

RGD ID:

621302

Description:

Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in cell-cell adhesion and nervous system development. Predicted to act upstream of or within sensory perception of sound. Predicted to be located in side of membrane. Predicted to be active in GABA-ergic synapse; axon; and presynaptic membrane. Orthologous to human CNTN5 (contactin 5); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

contactin-5; Nb-2; neural recognition molecule NB-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNTN5 (contactin 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cntn5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cntn5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNTN5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNTN5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cntn5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNTN5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNTN5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cntn5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cntn5 (contactin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SPINT2 (serine peptidase inhibitor, Kunitz type 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CNTN5 (contactin 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cntn5 (contactin 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cntn5 (contactin 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cont	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rig-6	Alliance	DIOPT (OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	cntn5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cntn5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	15,017,424 - 16,249,418 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	15,018,927 - 15,969,060 (-)	Ensembl				GRCr8
mRatBN7.2	8	6,735,715 - 7,967,727 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	6,738,239 - 7,967,957 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	10,662,191 - 11,387,303 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	8,959,815 - 9,684,932 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	6,995,473 - 7,722,132 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	7,812,371 - 9,033,962 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	7,814,895 - 8,524,643 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	7,791,458 - 9,011,097 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	6,530,878 - 7,190,594 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	8,261,993 - 8,970,431 (-)	NCBI		Celera
RGSC_v3.1	8	6,530,883 - 7,190,594 (-)	NCBI
Cytogenetic Map	8	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hirschsprung's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3,5-trinitro-1,3,5-triazinane (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

amphotericin B (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

chlordecone (ISO)

diquat (ISO)

glyphosate (EXP)

lidocaine (EXP)

lipopolysaccharide (ISO)

methapyrilene (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

permethrin (EXP)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

brain development (IBA)

cell adhesion (IEA,NAS)

cell-cell adhesion (IBA)

neuron projection development (IEA)

presynapse assembly (IEA,ISO)

sensory perception of sound (ISO)

Cellular Component

axon (IBA)

GABA-ergic synapse (IEA,ISO)

plasma membrane (IBA,IEA)

presynaptic membrane (IEA,ISO)

side of membrane (IEA)

Molecular Function

cell-cell adhesion mediator activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	Novel neural adhesion molecules in the Contactin/F3 subgroup of the immunoglobulin superfamily: isolation and characterization of cDNAs from rat brain.	Ogawa J, etal., Neurosci Lett 1996 Nov 8;218(3):173-6.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11438979	PMID:12653969	PMID:19177518	PMID:22285261	PMID:24411736

Genomics

Comparative Map Data

Cntn5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	15,017,424 - 16,249,418 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	15,018,927 - 15,969,060 (-)	Ensembl				GRCr8
mRatBN7.2	8	6,735,715 - 7,967,727 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	6,738,239 - 7,967,957 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	10,662,191 - 11,387,303 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	8,959,815 - 9,684,932 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	6,995,473 - 7,722,132 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	7,812,371 - 9,033,962 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	7,814,895 - 8,524,643 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	7,791,458 - 9,011,097 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	6,530,878 - 7,190,594 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	8,261,993 - 8,970,431 (-)	NCBI		Celera
RGSC_v3.1	8	6,530,883 - 7,190,594 (-)	NCBI
Cytogenetic Map	8	q11	NCBI

CNTN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	99,020,949 - 100,358,885 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	99,020,949 - 100,358,885 (+)	Ensembl			hg38	GRCh38
GRCh37	11	98,891,679 - 100,229,616 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	98,397,081 - 99,732,683 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	98,397,080 - 99,732,683	NCBI
Celera	11	96,061,589 - 97,396,830 (+)	NCBI		Celera
Cytogenetic Map	11	q22.1	NCBI
HuRef	11	94,824,853 - 96,165,763 (+)	NCBI		HuRef
CHM1_1	11	98,775,013 - 100,112,923 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	99,027,636 - 100,368,160 (+)	NCBI		T2T-CHM13v2.0

Cntn5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	9,627,928 - 10,904,992 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	9,660,896 - 10,904,780 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	9,634,223 - 10,904,775 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	9,660,891 - 10,904,775 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	9,660,891 - 10,904,775 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	9,622,723 - 10,145,039 (-)	NCBI		MGSCv36	mm8
Celera	9	7,036,870 - 8,280,842 (-)	NCBI		Celera
Cytogenetic Map	9	A1	NCBI
cM Map	9	2.46	NCBI

Cntn5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	3,436,462 - 4,123,202 (+)	Ensembl
ChiLan1.0	NW_004955412	3,105,095 - 4,122,484 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNTN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	99,853,422 - 101,182,095 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	100,949,024 - 102,277,334 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	94,012,914 - 95,340,930 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	97,528,796 - 98,851,566 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	98,062,341 - 98,848,900 (+)	Ensembl			panPan2	panpan1.1

CNTN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	1,127,965 - 2,408,282 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	1,130,393 - 1,865,309 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	1,140,922 - 2,419,677 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	1,289,066 - 2,569,970 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	1,290,073 - 2,026,806 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	1,072,303 - 2,352,365 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	1,158,463 - 2,442,659 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	1,212,566 - 2,489,898 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cntn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	83,260,849 - 84,440,282 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936551	7,098,632 - 7,804,064 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936551	7,097,064 - 7,571,894 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNTN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	30,572,372 - 31,469,858 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	30,259,603 - 31,469,860 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	34,328,486 - 35,529,593 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNTN5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	90,912,614 - 91,742,510 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	91,195,724 - 91,739,825 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	34,119,947 - 35,447,665 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cntn5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624878	2,372,472 - 3,092,507 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624878	2,369,865 - 3,348,339 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cntn5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	5,905,144 - 7,071,418 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cntn5
9821 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	30
Count of miRNA genes:	28
Interacting mature miRNAs:	30
Transcripts:	ENSRNOT00000009418
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat

Markers in Region

AU048094

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	7,131,168 - 7,131,382 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	8,206,877 - 8,207,090	NCBI	Rnor6.0
Rnor_5.0	8	8,185,857 - 8,186,070	UniSTS	Rnor5.0
RGSC_v3.4	8	6,868,552 - 6,868,765	UniSTS	RGSC3.4
Cytogenetic Map	8	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	3	19	125	38	34	13	21	13	6	115	49	112	39	81	21	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D87212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009418 ⟹ ENSRNOP00000009418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	15,019,948 - 15,969,060 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,738,239 - 7,967,957 (-)	Ensembl
Rnor_6.0 Ensembl	8	7,814,895 - 8,524,643 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103707 ⟹ ENSRNOP00000093216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	15,019,948 - 15,731,936 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,738,239 - 7,450,228 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162546 ⟹ ENSRNOP00000109036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	15,018,927 - 15,969,060 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163383 ⟹ ENSRNOP00000101480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	15,019,948 - 15,969,060 (-)	Ensembl

RefSeq Acc Id:

NM_053746 ⟹ NP_446198

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	15,019,948 - 15,731,957 (-)	NCBI
mRatBN7.2	8	6,738,239 - 7,450,249 (-)	NCBI
Rnor_6.0	8	7,814,895 - 8,524,643 (-)	NCBI
Rnor_5.0	8	7,791,458 - 9,011,097 (-)	NCBI
RGSC_v3.4	8	6,530,878 - 7,190,594 (-)	RGD
Celera	8	8,261,993 - 8,970,431 (-)	RGD

Sequence:

show sequence

AGAAGAGTCCAGTGACCAATCATGGCTTCCTCTTGGAGACTAATCCTGTTCCTGTCTTTCACAA
GTTGTCTTTCAGAATACTCTGAAGCTCTCTCTGGCCTTTCTACTTCATATGCTGCTTTGCTAAG
AATTAAGAAGAGTTCAACCTCATCTGCCTTCGGTTCCAAGTCCAGACCACGATACAGCAGTCCT
TCATTAGGCACCCTCAGTGTTTCTCCACCGAGCTGGCGAGGGGCAGCTCAGCAGTACCACTCCC
CGGTTAACCTTTACCACTCCCCAGATGCCTTCAGACAGGATGAAAGTGTGGATTATGGGCCAGT
ATTTGTGCAAGAGCCTGATGATATTATTTTTCCAACTGATTCTGATGAAAAGAAGGTAGCCCTG
AATTGTGAAGTTCGTGGCAACCCATCTCCTACTTACAGATGGCTTCGGAATGGAACAGAAATTG
ATCTTGAGAGTGACTACCGCTACAGTATGATAGACGGCACCTTCATCATCAACAATCCAAGTGA
AAGCAGGGATTCAGGGCTCTACCAGTGTTTAGCCACCAACACGTTTGGAAGTATTCTCAGTCGA
GAAGCCACACTTCAGTTTGCTTATCTGGGGAATTTTAGTGGCCGGACAAGAAGTGCAGTCTCAG
TGCGGGAAGGCCAGGGGGTTGTTCTGATGTGCTCTCCACCGCCTCATTCTCCAGAGATCATCTA
TAGCTGGGTCTTCAATGAGTTCCCTTCCTTCGTGGCAGAGGACAGCCGGCGGTTCATATCCCAA
GAGACAGGCAACCTCTATATTTCTAAAGTGCAAACATCAGATGTTGGCAGCTACATTTGTCTGG
TGAAAAATGCTGTAACGAATGCTCGCGTGCTCAGCCCTCCAACCCCGCTCACGCTTCGAAATGA
TGGTGTAATGGGAGAATACGAGCCAAAAATTGAGGTCCATTTTCCCACCACGGTCACAGCTGCT
AAGGGAACGACTGTGAAGATGGAATGCTTTGCACTTGGCAACCCTGTTCCAACGATCACTTGGA
TGAAGGTTAACGGTTACATTCCCAGTAAGTCCAGACTGCGAAAATCCCAGGCGGTCCTGGAGAT
CCCCAACCTGCAGCTGGATGACGCCGGAATATATGAATGCACAGCTGAAAACTCCCGAGGGAAA
AACTCCTTTCGTGGACAGCTCCAAATATACACGTACCCACACTGGGTACAGAAACTGAATGACA
CCCAGCTGGACAGTGGGAGTCCTCTGCAGTGGGAATGCAAGGCTACCGGAAAGCCCAGGCCCAC
ATACCGCTGGCTGAAGAATGGAGCACCCCTCCTGCCACAGAGCAGAGTGGACACAGCTAATGGA
GTATTGGCGATCCATAGTGTAAATCAATCAGATGCTGGGATGTATCAGTGTTTGGCTGAGAATA
AATATGGAGCTATTTATGCGAGCGCCGAGCTGAAGATTTTAGCCTCACCACCCTCTTTTGAACT
GAATCAAGTGAAGAAATCAATAATTGTCACGAAAGACCGGGAAGTGCTCATAGAATGCAAACCC
CAGGGCTCTCCAAAGCCAGCCATCTCCTGGAGGAAGGGAGACAAGGCAGTGAGGGGGAACAAGA
GAATAGCTATTCTTCCAGACGGAAGCCTGCGGATCCTCAATGCTTCTAAAGCGGATGAGGGGAA
GTACATTTGCCAAGGGGTGAACATCTTCGGTTCCGCGGAGATCATAGCTTCTGTGTCTGTCAAA
GAACCCACAAGGATAGAGCTTACTCCTAAAAGAACAGAGTTAACTGTTGGAGAGAGCATTGTCC
TTAACTGCAAAGCCATGCACGACTCCAGTTTGGATGTCACTTTCTACTGGACACTAAAAGGACA
ACCTATTGATTTTGAGAAAGAAGGCGGACATTTTGAAAGCATCAGGGCTCAAGCATCCTCTGCA
GATTTAATGATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGACCA
CAGCAGACAGTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGTCCCCCAGGGCCACCTGGAGT
GGTCATAGTGGAGGAGATCACAGAAAGCACAGCCACTCTCTCATGGAGTCCAGCAACTGACAAC
CACAGCCCCATCTCTTCCTACAACCTTCAGGCTCGCAGCCCCTTCTCCCTGGGCTGGCAAACAG
TGAAGACAGTCCCTGAAGTCATCACAGGAGACATGGAGTCAGCGATGGCTGTGGACCTAAACCC
CTGGGTAGAATATGAATTCCGAGTGGTGGCCACCAATCCAATTGGGACAGGAGATCCAAGCATT
CCATCTCGAATGATCCGCACAAACGAGGCAGTTCCTAAGACGGCACCCAGCAACGTGAGTGGAG
GAAGTGGAAGAAGGCACGAGTTGGTCATTGCCTGGGAGCCAGTATCAGAAGAGTTTCAGAATGG
GGAAGGCTTCGGCTACATAGTGGCATTCAGACCGAATGGAACACGTGGCTGGAAGGAGAAAATG
GTTACTTCTTCGGATGCTTCCAAGTTCATTTACCGAGACGAAAGTGTCCCTCCTCTCACACCCT
TTGAAGTCAAAGTTGGTGTCTATAATAATAAAGGTGATGGGCCTTTCAGCCAGATTGTAGTCAT
CTGCTCGGCTGAGGGAGAACCCACTGCTGCTCCCACTGATGTCACAGCGACCAGTGTGTCGGTG
TCAGAGATTTTTGTTGTATGGAAACATGTTAAAGAGAGTCTCGGAAGACCACAGGGGTTTGAGA
TTGGTTACTGGAAAGATACCGAGCCAGAAGACTCTGCAGAAACAGTCAGAACCAGAGGGAATGA
GTCATTCGTCATGTTGACGGGATTGGAAGGCGACACACTCTATCACCTCACAGTCAGGGCTTAC
AATGGAGCCGGGTATGGGCCACCCAGCAGGGAAGTGAGCGCCACCACCAAGAGGCACCCCCCTA
GCGAACCACCTGGCAACCTCCGTTGGGAACAGCAGGGTTCCCAGGTTTCCCTAGGCTGGGAGCC
TGTCAGACCTCTAGCCAACGAGTCTGAAGTCATGGGTTACAAGGTTTTTTATAGGCAAGAGGGT
CACAGCAAAGGTCAAGTTATTGAGACACAGAAACCTCAGGCTGTTGTGCCTCTCCCTGAGGCTG
GAGTCTACATTATTGAAGTTCGAGCGTACAGTGAAGGAGGAGATGGAACAGCGAGCTCCCAAAT
CAGGGTACCTTCATATGCAGGTGGGAAAATCACAAGCGCTCAGTCCACCCTGCACTCTCTCTCC
AAGTGGTCCTCAGTAACACTGCTCTTGGCTTTGATGCTTCCTTCCAGTTCCTGGTGAAAGCAGC
TCACGCAGTGTGC

hide sequence

RefSeq Acc Id:

XM_017595408 ⟹ XP_017450897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	15,017,424 - 16,249,318 (-)	NCBI
mRatBN7.2	8	6,735,715 - 7,967,614 (-)	NCBI
Rnor_6.0	8	7,812,371 - 9,033,826 (-)	NCBI

Sequence:

show sequence

ACTTAGGGTTTTTGACACAATCGCTTCTGCACAGCCATCCTTCCTTGTCGCGTTGCCAGAGGTA
TTTTTAGAAGACTGCTATTTAATGCTATTCAAATTCTGCCAAGTATCATTTCTGCATGACGACC
ACAAAAGGATTACTTTACAGAATCTGCTGCCATTTTGAAGAGTGTGATTTTGACCCTGATTCAG
AAAACAGGATTTTTGTCAATGAGGAAACATCAGTGCTGATCACTACTCTGGGATCCAGAAGAGT
CCAGTGACCAATCATGGCTTCCTCTTGGAGACTAATCCTGTTCCTGTCTTTCACAAGTTGTCTT
TCAGAATACTCTGAAGCTCTCTCTGGCCTTTCTACTTCATATGCTGCTTTGCTAAGAATTAAGA
AGAGTTCAACCTCATCTGCCTTCGGTTCCAAGTCCAGACCACGATACAGCAGTCCTTCATTAGG
CACCCTCAGTGTTTCTCCACCGAGCTGGCGAGGGGCAGCTCAGCAGTACCACTCCCCGGTTAAC
CTTTACCACTCCCCAGATGCCTTCAGACAGGATGAAAGTGTGGATTATGGGCCAGTATTTGTGC
AAGAGCCTGATGATATTATTTTTCCAACTGATTCTGATGAAAAGAAGGTAGCCCTGAATTGTGA
AGTTCGTGGCAACCCATCTCCTACTTACAGATGGCTTCGGAATGGAACAGAAATTGATCTTGAG
AGTGACTACCGCTACAGTATGATAGACGGCACCTTCATCATCAACAATCCAAGTGAAAGCAGGG
ATTCAGGGCTCTACCAGTGTTTAGCCACCAACACGTTTGGAAGTATTCTCAGTCGAGAAGCCAC
ACTTCAGTTTGCTTATCTGGGGAATTTTAGTGGCCGGACAAGAAGTGCAGTCTCAGTGCGGGAA
GGCCAGGGGGTTGTTCTGATGTGCTCTCCACCGCCTCATTCTCCAGAGATCATCTATAGCTGGG
TCTTCAATGAGTTCCCTTCCTTCGTGGCAGAGGACAGCCGGCGGTTCATATCCCAAGAGACAGG
CAACCTCTATATTTCTAAAGTGCAAACATCAGATGTTGGCAGCTACATTTGTCTGGTGAAAAAT
GCTGTAACGAATGCTCGCGTGCTCAGCCCTCCAACCCCGCTCACGCTTCGAAATGATGGTGTAA
TGGGAGAATACGAGCCAAAAATTGAGGTCCATTTTCCCACCACGGTCACAGCTGCTAAGGGAAC
GACTGTGAAGATGGAATGCTTTGCACTTGGCAACCCTGTTCCAACGATCACTTGGATGAAGGTT
AACGGTTACATTCCCAGTAAGTCCAGACTGCGAAAATCCCAGGCGGTCCTGGAGATCCCCAACC
TGCAGCTGGATGACGCCGGAATATATGAATGCACAGCTGAAAACTCCCGAGGGAAAAACTCCTT
TCGTGGACAGCTCCAAATATATACGTACCCACACTGGGTACAGAAACTGAATGACACCCAGCTG
GACAGTGGGAGTCCTCTGCAGTGGGAATGCAAGGCTACCGGAAAGCCCAGGCCCACATACCGCT
GGCTGAAGAATGGAGCACCCCTCCTGCCACAGAGCAGAGTGGACACAGCTAATGGAGTATTGGC
GATCCATAGTGTAAATCAATCAGATGCTGGGATGTATCAGTGTTTGGCTGAGAATAAATATGGA
GCTATTTATGCGAGCGCCGAGCTGAAGATTTTAGCCTCACCACCCTCTTTTGAACTGAATCAAG
TGAAGAAATCAATAATTGTCACGAAAGACCGGGAAGTGCTCATAGAATGCAAACCCCAGGGCTC
TCCAAAGCCAGCCATCTCCTGGAGGAAGGGAGACAAGGCAGTGAGGGGGAACAAGAGAATAGCT
ATTCTTCCAGACGGAAGCCTGCGGATCCTCAATGCTTCTAAAGCGGATGAGGGGAAGTACATTT
GCCAAGGGGTGAACATCTTCGGTTCCGCGGAGATCATAGCTTCTGTGTCTGTCAAAGAACCCAC
AAGGATAGAGCTTACTCCTAAAAGAACAGAGTTAACTGTTGGAGAGAGCATTGTCCTTAACTGC
AAAGCCATGCACGACTCCAGTTTGGATGTCACTTTCTACTGGACACTAAAAGGACAACCTATTG
ATTTTGAGAAAGAAGGCGGACATTTTGAAAGCATCAGGGCTCAAGCATCCTCTGCAGATTTAAT
GATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGACCACAGCAGAC
AGTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGTCCCCCAGGGCCACCTGGAGTGGTCATAG
TGGAGGAGATCACAGAAAGCACAGCCACTCTCTCATGGAGTCCAGCAACTGACAACCACAGCCC
CATCTCTTCCTACAACCTTCAGGCTCGCAGCCCCTTCTCCCTGGGCTGGCAAACAGTGAAGACA
GTCCCTGAAGTCATCACAGGAGACATGGAGTCAGCGATGGCTGTGGACCTAAACCCCTGGGTAG
AATATGAATTCCGAGTGGTGGCCACCAATCCAATTGGGACAGGAGATCCAAGCATTCCATCTCG
AATGATCCGCACAAACGAGGCAGTTCCTAAGACGGCACCCAGCAACGTGAGTGGAGGAAGTGGA
AGAAGGCACGAGTTGGTCATTGCCTGGGAGCCAGTATCAGAAGAGTTTCAGAATGGGGAAGGCT
TCGGCTACATAGTGGCATTCAGACCGAATGGAACACGTGGCTGGAAGGAGAAAATGGTTACTTC
TTCGGATGCTTCCAAGTTCATTTACCGAGACGAAAGTGTCCCTCCTCTCACACCCTTTGAAGTC
AAAGTTGGTGTCTATAATAATAAAGGTGATGGGCCTTTCAGCCAGATTGTAGTCATCTGCTCGG
CTGAGGGAGAACCCACTGCTGCTCCCACTGATGTCACAGCGACCAGTGTGTCGGTGTCAGAGAT
TTTTGTTGTATGGAAACATGTTAAAGAGAGTCTCGGAAGACCACAGGGGTTTGAGATTGGTTAC
TGGAAAGATACCGAGCCAGAAGACTCTGCAGAAACAGTCAGAACCAGAGGGAATGAGTCATTCG
TCATGTTGACGGGATTGGAAGGCGACACACTCTATCACCTCACAGTCAGGGCTTACAATGGAGC
CGGGTATGGGCCACCCAGCAGGGAAGTGAGCGCCACCACCAAGAGGCACCCCCCTAGCGAACCA
CCTGGCAACCTCCGCTGGGAACAGCAGGGTTCCCAGGTTTCCCTAGGCTGGGAGCCTGTCAGAC
CTCTAGCCAACGAGTCTGAAGTCATGGGTTACAAGGTTTTTTATAGGCAAGAGGGTCACAGCAA
AGGTCAAGTTATTGAGACACAGAAACCTCAGGCTGTTGTGCCTCTCCCTGAGGCTGGAGTCTAC
ATTATTGAAGTTCGAGCGTACAGTGAAGGAGGAGATGGAACAGCGAGCTCCCAAATCAGGGTAC
CTTCATATGCAGGTGGGAAAATCACAAGCGCTCAGTCCACCCTGCACTCTCTCTCCAAGTGGTC
CTCAGTAACACTGCTCTTGGCTTTGATGCTTCCTTCCAGTTCCTGGTGAAAGCAGCTCACGCAG
TGTGCTTTTCTTTGCTTTAGCTTGAGAAGGCAGCAGCAGACAGAGCGCAGAATGAATGGAGATG
GAGTCCTGAGAAAAGCTTTGAACACACGGGACTACAGATGGTGCATTCTCAGGAGTCCGGGGGG
AGAATATGAGTTACCCATCAGGTTTCTCTTTGGATTTTATAAACGGAGAGGACACTTCTTGGTC
CAATAAAAATATGCAGATTGTATGTAATGAAATTTTGTAAGCAAAGGTAATTTCTGTCAGATGT
ATTCCTAATTTTTTTAATATGTTGGGATTTGATTTTCTATTTAATGACTCTGAGTGTCAGCCAT
CCATTGCCGAGGTGGTCTCTATAGCCTGCTCAAAATCAAATACAAACCCGAGAAGGAAACGTGT
TCTCAAGACTCTGTGTCTAATGTTTTCCAAACTTCCCATTAGATCACTGCTTCAATACCAAACC
AGCAGGAAATATGAAGAAATACTTCAATTACTAGGGTCCAGGATAGGGGAAATACATAAAAGAA
TTCTTAAAAAACTGTTGTATGACTGAATAGAAAAATAGCAAGATTTTTCCATAGGCCATTCTAC
ATGTGCCCATATAGTAAGGTATTAAGGTAGGGAATTTCCATTAGTGGAAGTTGAATAGAGAATG
AGTTCAAACTGAGTTATTGTCTCCCATGGAGTAACATGGGACGTAAGAGTGAATACAGTCCATG
TTTAATGTCAAAAGATAGTTTAACGTCACGAAAATCGTGACCACGGAAAACATCAACAGCACAA
AGCCACAGGTGCTAATACGAAAGTGCAAAGAGCAGGGGAGAGGGCGCCCCAATTCTCTGCCTGC
TGTCAAGGCAGACGTAGAAATGAGCAAAAGGCTTTCTTCTACTTGCAAGTGTTATAAGGATAAG
GAAAGCTGGTGGAAGAAGGAATGAAACTAATTATTCAAACAAAAAATCCGAGGTTTTAGACACT
GTTCCTCATCATATGCCACTTACAAATGCTTCCCAGCTCCTGGGGTAAAGAGAGTCTGTTAGGT
AGAATGATGTTCTTAAAACTAAAACTGAGTTGTGGAAACACAGCATTGCCACAGGGCTTCAGCT
AGTCTAGCCAAAGTCTGCATTGCTGGATTCTGTGAAAATTTCAGTGACAATCCCATTGATGAAT
TGGAGGAGTCAGATTAAACCTAAGAGATAATTCATGGGAAGCTCAGAGAGATTGTCCTACTTCC
TGAGTGTGTGATAGGACACAGCACAAGGACACATCAGGGTGAAGATCACTATGAAGAATCCAGA
AATGATACAGAAGGCATACTAACGTTCCAGAAAGAACCTGAAGATTCTGGCTAAATGAGCAATG
CTCATATGGGGACAAAAGGTAGATTTCATTGCTTTGCCTTTATATGATATGAGCCAATTAACTG
TATTTGCATCTGTAATAACAAACAGAATGAAAATCCTGAGCTTAGGTAAATGACAGTTGGGATA
GTCTATCCTGAATATCCTATAAAAGTTTTCAGGGTGCAGTGTAACTATCCATCAGTTATTCCCA
TTCTGTTTAGAGAGAATTGTGTCCCAGGCAGCTCTAAGCAAAGGAAAGTCAATATAAGAAGATG
ATTTCAGTCAACAGACTGTTACTAAGAGAGTGACTATTCAAGCCTATGAATAATCAAACCACGT
GGCCTTCCTCATGTGCCTCCAGGGGAATAGGAGAGGCTGGAGTTCACCAATAAGAATCAAAAGA
TGAGCTTCCCAAAGCATGGTGTCACTTGCAGAAACAAATCCTGCATCTGAAAAAAAATATAGAA
AGATATTTTTAAAAAAATATGCTTTTCATATTTGGTAAATTGAGATATTTTCTTCATTTATTAT
TGATGCTCTCATTTAGATTATCTGAAGAACTTTAAAAATCAACTTAACTAAATTCTTCTAAAAA
AAACCAGTAAAATAAAAATGTCACAAAATGGCAAATTCTAATTAATCAATATTCCCAAATCACT
GCCTGAATATCCACATATAGAATTTCTGATGTCATATTCTCACACAAGTCAGAGATGTGAGGTG
CTTTTACTCAATATGCATAAAATATGTATTTTGCATCATGAACCTATTTAAAATAAAGCAGGTT
TTCACTGTATCTGTATTTCTGTACCCCACATTTGTTATTTTGTAGCAAGCAGACAACATTCCTA
TCAAGGAACATTATTTTCCAACAACAGTACTGAGAACGATTTTTCCTTGGTGGGATGGTAACCA
CACAGTCTTACATCACTGAAGAGACTGTATTTTTCTACAATGCCCACTGAATCATAAGAAAACA
GCTCTCCTTATCATGAGACATTTCATGACAGCAAATGTTTTGCATATGTAACTGAAGGTACTGT
GGACTCTGTGTCGAACCGTTAAGTATGTTGTATACAATCTGTATATATACTATATATAATGGTA
TATATCATGTGGAGGGCACAGTAAGATAATAGTTCTGTGTACTGTTCTTGTAACAATAGACCTT
TTTAATAAATAACTCCATTTTTATTGACTTTTA

hide sequence

RefSeq Acc Id:

XM_017595409 ⟹ XP_017450898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	15,017,424 - 16,249,418 (-)	NCBI
mRatBN7.2	8	6,735,715 - 7,967,727 (-)	NCBI
Rnor_6.0	8	7,812,371 - 9,033,962 (-)	NCBI

Sequence:

show sequence

GTCCAGGGCAGGAGGATGGGAGACGAGGATTGAGAGTCACCGAAATGGACAGAGGCAGCTGGCA
TCTCACTGGTATTTTTAGAAGACTGCTATTTAATGCTATTCAAATTCTGCCAAGTATCATTTCT
GCATGACGACCACAAAAGGATTACTTTACAGAATCTGCTGCCATTTTGAAGAGTGTGATTTTGA
CCCTGATTCAGAAAACAGGATTTTTGTCAATGAGGAAACATCAGTGCTGATCACTACTCTGGGA
TCCAGAAGAGTCCAGTGACCAATCATGGCTTCCTCTTGGAGACTAATCCTGTTCCTGTCTTTCA
CAAGTTGTCTTTCAGAATACTCTGAAGCTCTCTCTGGCCTTTCTACTTCATATGCTGCTTTGCT
AAGAATTAAGAAGAGTTCAACCTCATCTGCCTTCGGTTCCAAGTCCAGACCACGATACAGCAGT
CCTTCATTAGGCACCCTCAGTGTTTCTCCACCGAGCTGGCGAGGGGCAGCTCAGCAGTACCACT
CCCCGGTTAACCTTTACCACTCCCCAGATGCCTTCAGACAGGATGAAAGTGTGGATTATGGGCC
AGTATTTGTGCAAGAGCCTGATGATATTATTTTTCCAACTGATTCTGATGAAAAGAAGGTAGCC
CTGAATTGTGAAGTTCGTGGCAACCCATCTCCTACTTACAGATGGCTTCGGAATGGAACAGAAA
TTGATCTTGAGAGTGACTACCGCTACAGTATGATAGACGGCACCTTCATCATCAACAATCCAAG
TGAAAGCAGGGATTCAGGGCTCTACCAGTGTTTAGCCACCAACACGTTTGGAAGTATTCTCAGT
CGAGAAGCCACACTTCAGTTTGCTTATCTGGGGAATTTTAGTGGCCGGACAAGAAGTGCAGTCT
CAGTGCGGGAAGGCCAGGGGGTTGTTCTGATGTGCTCTCCACCGCCTCATTCTCCAGAGATCAT
CTATAGCTGGGTCTTCAATGAGTTCCCTTCCTTCGTGGCAGAGGACAGCCGGCGGTTCATATCC
CAAGAGACAGGCAACCTCTATATTTCTAAAGTGCAAACATCAGATGTTGGCAGCTACATTTGTC
TGGTGAAAAATGCTGTAACGAATGCTCGCGTGCTCAGCCCTCCAACCCCGCTCACGCTTCGAAA
TGATGGTGTAATGGGAGAATACGAGCCAAAAATTGAGGTCCATTTTCCCACCACGGTCACAGCT
GCTAAGGGAACGACTGTGAAGATGGAATGCTTTGCACTTGGCAACCCTGTTCCAACGATCACTT
GGATGAAGGTTAACGGTTACATTCCCAGTAAGTCCAGACTGCGAAAATCCCAGGCGGTCCTGGA
GATCCCCAACCTGCAGCTGGATGACGCCGGAATATATGAATGCACAGCTGAAAACTCCCGAGGG
AAAAACTCCTTTCGTGGACAGCTCCAAATATATACGTACCCACACTGGGTACAGAAACTGAATG
ACACCCAGCTGGACAGTGGGAGTCCTCTGCAGTGGGAATGCAAGGCTACCGGAAAGCCCAGGCC
CACATACCGCTGGCTGAAGAATGGAGCACCCCTCCTGCCACAGAGCAGAGTGGACACAGCTAAT
GGAGTATTGGCGATCCATAGTGTAAATCAATCAGATGCTGGGATGTATCAGTGTTTGGCTGAGA
ATAAATATGGAGCTATTTATGCGAGCGCCGAGCTGAAGATTTTAGCCTCACCACCCTCTTTTGA
ACTGAATCAAGTGAAGAAATCAATAATTGTCACGAAAGACCGGGAAGTGCTCATAGAATGCAAA
CCCCAGGGCTCTCCAAAGCCAGCCATCTCCTGGAGGAAGGGAGACAAGGCAGTGAGGGGGAACA
AGAGAATAGCTATTCTTCCAGACGGAAGCCTGCGGATCCTCAATGCTTCTAAAGCGGATGAGGG
GAAGTACATTTGCCAAGGGGTGAACATCTTCGGTTCCGCGGAGATCATAGCTTCTGTGTCTGTC
AAAGAACCCACAAGGATAGAGCTTACTCCTAAAAGAACAGAGTTAACTGTTGGAGAGAGCATTG
TCCTTAACTGCAAAGCCATGCACGACTCCAGTTTGGATGTCACTTTCTACTGGACACTAAAAGG
ACAACCTATTGATTTTGAGAAAGAAGGCGGACATTTTGAAAGCATCAGGGCTCAAGCATCCTCT
GCAGATTTAATGATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGA
CCACAGCAGACAGTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGTCCCCCAGGGCCACCTGG
AGTGGTCATAGTGGAGGAGATCACAGAAAGCACAGCCACTCTCTCATGGAGTCCAGCAACTGAC
AACCACAGCCCCATCTCTTCCTACAACCTTCAGGCTCGCAGCCCCTTCTCCCTGGGCTGGCAAA
CAGTGAAGACAGTCCCTGAAGTCATCACAGGAGACATGGAGTCAGCGATGGCTGTGGACCTAAA
CCCCTGGGTAGAATATGAATTCCGAGTGGTGGCCACCAATCCAATTGGGACAGGAGATCCAAGC
ATTCCATCTCGAATGATCCGCACAAACGAGGCAGTTCCTAAGACGGCACCCAGCAACGTGAGTG
GAGGAAGTGGAAGAAGGCACGAGTTGGTCATTGCCTGGGAGCCAGTATCAGAAGAGTTTCAGAA
TGGGGAAGGCTTCGGCTACATAGTGGCATTCAGACCGAATGGAACACGTGGCTGGAAGGAGAAA
ATGGTTACTTCTTCGGATGCTTCCAAGTTCATTTACCGAGACGAAAGTGTCCCTCCTCTCACAC
CCTTTGAAGTCAAAGTTGGTGTCTATAATAATAAAGGTGATGGGCCTTTCAGCCAGATTGTAGT
CATCTGCTCGGCTGAGGGAGAACCCACTGCTGCTCCCACTGATGTCACAGCGACCAGTGTGTCG
GTGTCAGAGATTTTTGTTGTATGGAAACATGTTAAAGAGAGTCTCGGAAGACCACAGGGGTTTG
AGATTGGTTACTGGAAAGATACCGAGCCAGAAGACTCTGCAGAAACAGTCAGAACCAGAGGGAA
TGAGTCATTCGTCATGTTGACGGGATTGGAAGGCGACACACTCTATCACCTCACAGTCAGGGCT
TACAATGGAGCCGGGTATGGGCCACCCAGCAGGGAAGTGAGCGCCACCACCAAGAGGCACCCCC
CTAGCGAACCACCTGGCAACCTCCGCTGGGAACAGCAGGGTTCCCAGGTTTCCCTAGGCTGGGA
GCCTGTCAGACCTCTAGCCAACGAGTCTGAAGTCATGGGTTACAAGGTTTTTTATAGGCAAGAG
GGTCACAGCAAAGGTCAAGTTATTGAGACACAGAAACCTCAGGCTGTTGTGCCTCTCCCTGAGG
CTGGAGTCTACATTATTGAAGTTCGAGCGTACAGTGAAGGAGGAGATGGAACAGCGAGCTCCCA
AATCAGGGTACCTTCATATGCAGGTGGGAAAATCACAAGCGCTCAGTCCACCCTGCACTCTCTC
TCCAAGTGGTCCTCAGTAACACTGCTCTTGGCTTTGATGCTTCCTTCCAGTTCCTGGTGAAAGC
AGCTCACGCAGTGTGCTTTTCTTTGCTTTAGCTTGAGAAGGCAGCAGCAGACAGAGCGCAGAAT
GAATGGAGATGGAGTCCTGAGAAAAGCTTTGAACACACGGGACTACAGATGGTGCATTCTCAGG
AGTCCGGGGGGAGAATATGAGTTACCCATCAGGTTTCTCTTTGGATTTTATAAACGGAGAGGAC
ACTTCTTGGTCCAATAAAAATATGCAGATTGTATGTAATGAAATTTTGTAAGCAAAGGTAATTT
CTGTCAGATGTATTCCTAATTTTTTTAATATGTTGGGATTTGATTTTCTATTTAATGACTCTGA
GTGTCAGCCATCCATTGCCGAGGTGGTCTCTATAGCCTGCTCAAAATCAAATACAAACCCGAGA
AGGAAACGTGTTCTCAAGACTCTGTGTCTAATGTTTTCCAAACTTCCCATTAGATCACTGCTTC
AATACCAAACCAGCAGGAAATATGAAGAAATACTTCAATTACTAGGGTCCAGGATAGGGGAAAT
ACATAAAAGAATTCTTAAAAAACTGTTGTATGACTGAATAGAAAAATAGCAAGATTTTTCCATA
GGCCATTCTACATGTGCCCATATAGTAAGGTATTAAGGTAGGGAATTTCCATTAGTGGAAGTTG
AATAGAGAATGAGTTCAAACTGAGTTATTGTCTCCCATGGAGTAACATGGGACGTAAGAGTGAA
TACAGTCCATGTTTAATGTCAAAAGATAGTTTAACGTCACGAAAATCGTGACCACGGAAAACAT
CAACAGCACAAAGCCACAGGTGCTAATACGAAAGTGCAAAGAGCAGGGGAGAGGGCGCCCCAAT
TCTCTGCCTGCTGTCAAGGCAGACGTAGAAATGAGCAAAAGGCTTTCTTCTACTTGCAAGTGTT
ATAAGGATAAGGAAAGCTGGTGGAAGAAGGAATGAAACTAATTATTCAAACAAAAAATCCGAGG
TTTTAGACACTGTTCCTCATCATATGCCACTTACAAATGCTTCCCAGCTCCTGGGGTAAAGAGA
GTCTGTTAGGTAGAATGATGTTCTTAAAACTAAAACTGAGTTGTGGAAACACAGCATTGCCACA
GGGCTTCAGCTAGTCTAGCCAAAGTCTGCATTGCTGGATTCTGTGAAAATTTCAGTGACAATCC
CATTGATGAATTGGAGGAGTCAGATTAAACCTAAGAGATAATTCATGGGAAGCTCAGAGAGATT
GTCCTACTTCCTGAGTGTGTGATAGGACACAGCACAAGGACACATCAGGGTGAAGATCACTATG
AAGAATCCAGAAATGATACAGAAGGCATACTAACGTTCCAGAAAGAACCTGAAGATTCTGGCTA
AATGAGCAATGCTCATATGGGGACAAAAGGTAGATTTCATTGCTTTGCCTTTATATGATATGAG
CCAATTAACTGTATTTGCATCTGTAATAACAAACAGAATGAAAATCCTGAGCTTAGGTAAATGA
CAGTTGGGATAGTCTATCCTGAATATCCTATAAAAGTTTTCAGGGTGCAGTGTAACTATCCATC
AGTTATTCCCATTCTGTTTAGAGAGAATTGTGTCCCAGGCAGCTCTAAGCAAAGGAAAGTCAAT
ATAAGAAGATGATTTCAGTCAACAGACTGTTACTAAGAGAGTGACTATTCAAGCCTATGAATAA
TCAAACCACGTGGCCTTCCTCATGTGCCTCCAGGGGAATAGGAGAGGCTGGAGTTCACCAATAA
GAATCAAAAGATGAGCTTCCCAAAGCATGGTGTCACTTGCAGAAACAAATCCTGCATCTGAAAA
AAAATATAGAAAGATATTTTTAAAAAAATATGCTTTTCATATTTGGTAAATTGAGATATTTTCT
TCATTTATTATTGATGCTCTCATTTAGATTATCTGAAGAACTTTAAAAATCAACTTAACTAAAT
TCTTCTAAAAAAAACCAGTAAAATAAAAATGTCACAAAATGGCAAATTCTAATTAATCAATATT
CCCAAATCACTGCCTGAATATCCACATATAGAATTTCTGATGTCATATTCTCACACAAGTCAGA
GATGTGAGGTGCTTTTACTCAATATGCATAAAATATGTATTTTGCATCATGAACCTATTTAAAA
TAAAGCAGGTTTTCACTGTATCTGTATTTCTGTACCCCACATTTGTTATTTTGTAGCAAGCAGA
CAACATTCCTATCAAGGAACATTATTTTCCAACAACAGTACTGAGAACGATTTTTCCTTGGTGG
GATGGTAACCACACAGTCTTACATCACTGAAGAGACTGTATTTTTCTACAATGCCCACTGAATC
ATAAGAAAACAGCTCTCCTTATCATGAGACATTTCATGACAGCAAATGTTTTGCATATGTAACT
GAAGGTACTGTGGACTCTGTGTCGAACCGTTAAGTATGTTGTATACAATCTGTATATATACTAT
ATATAATGGTATATATCATGTGGAGGGCACAGTAAGATAATAGTTCTGTGTACTGTTCTTGTAA
CAATAGACCTTTTTAATAAATAACTCCATTTTTATTGACTTTTA

hide sequence

RefSeq Acc Id:

XM_017595411 ⟹ XP_017450900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	15,017,424 - 16,249,318 (-)	NCBI
mRatBN7.2	8	6,735,715 - 7,967,614 (-)	NCBI
Rnor_6.0	8	7,812,371 - 9,033,826 (-)	NCBI

Sequence:

show sequence

ACTTAGGGTTTTTGACACAATCGCTTCTGCACAGCCATCCTTCCTTGTCGCGTTGCCAGAGGTA
TTTTTAGAAGACTGCTATTTAATGCTATTCAAATTCTGCCAAGTATCATTTCTGCATGACGACC
ACAAAAGGATTACTTTACAGAATCTGCTGCCATTTTGAAGAGTGTGATTTTGACCCTGATTCAG
AAAACAGGATTTTTGTCAATGAGGAAACATCAGTGCTGATCACTACTCTGGGATCCAGAAGAGT
CCAGTGACCAATCATGGCTTCCTCTTGGAGACTAATCCTGTTCCTGTCTTTCACAAGTTGTCTT
TCAGAATACTCTGAAGCTCTCTCTGGCCTTTCTACTTCATATGCTGCTTTGCTAAGAATTAAGA
AGAGTTCAACCTCATCTGCCTTCGGTTCCAAGTCCAGACCACGATACAGCAGTCCTTCATTAGG
CACCCTCAGTGTTTCTCCACCGAGCTGGCGAGGGGCAGCTCAGCAGTACCACTCCCCGGTTAAC
CTTTACCACTCCCCAGATGCCTTCAGACAGGATGAAAGTGTGGATTATGGGCCAGTATTTGTGC
AAGAGCCTGATGATATTATTTTTCCAACTGATTCTGATGAAAAGAAGGTAGCCCTGAATTGTGA
AGTTCGTGGCAACCCATCTCCTACTTACAGATGGCTTCGGAATGGAACAGAAATTGATCTTGAG
AGTGACTACCGCTACAGTATGATAGACGGCACCTTCATCATCAACAATCCAAGTGAAAGCAGGG
ATTCAGGGCTCTACCAGTGTTTAGCCACCAACACGTTTGGAAGTATTCTCAGTCGAGAAGCCAC
ACTTCAGTTTGCTTATCTGGGGAATTTTAGTGGCCGGACAAGAAGTGCAGTCTCAGTGCGGGAA
GGCCAGGGGGTTGTTCTGATGTGCTCTCCACCGCCTCATTCTCCAGAGATCATCTATAGCTGGG
TCTTCAATGAGTTCCCTTCCTTCGTGGCAGAGGACAGCCGGCGGTTCATATCCCAAGAGACAGG
CAACCTCTATATTTCTAAAGTGCAAACATCAGATGTTGGCAGCTACATTTGTCTGGTGAAAAAT
GCTGTAACGAATGCTCGCGTGCTCAGCCCTCCAACCCCGCTCACGCTTCGAAATGATGGTGTAA
TGGGAGAATACGAGCCAAAAATTGAGGTCCATTTTCCCACCACGGTCACAGCTGCTAAGGGAAC
GACTGTGAAGATGGAATGCTTTGCACTTGGCAACCCTGTTCCAACGATCACTTGGATGAAGGTT
AACGGTTACATTCCCAGTAAGTCCAGACTGCGAAAATCCCAGGCGGTCCTGGAGATCCCCAACC
TGCAGCTGGATGACGCCGGAATATATGAATGCACAGCTGAAAACTCCCGAGGGAAAAACTCCTT
TCGTGGACAGCTCCAAATATATACGTACCCACACTGGGTACAGAAACTGAATGACACCCAGCTG
GACAGTGGGAGTCCTCTGCAGTGGGAATGCAAGGCTACCGGAAAGCCCAGGCCCACATACCGCT
GGCTGAAGAATGGAGCACCCCTCCTGCCACAGAGCAGAGTGGACACAGCTAATGGAGTATTGGC
GATCCATAGTGTAAATCAATCAGATGCTGGGATGTATCAGTGTTTGGCTGAGAATAAATATGGA
GCTATTTATGCGAGCGCCGAGCTGAAGATTTTAGCCTCACCACCCTCTTTTGAACTGAATCAAG
TGAAGAAATCAATAATTGTCACGAAAGACCGGGAAGTGCTCATAGAATGCAAACCCCAGGGCTC
TCCAAAGCCAGCCATCTCCTGGAGGAAGGGAGACAAGGCAGTGAGGGGGAACAAGAGAATAGCT
ATTCTTCCAGACGGAAGCCTGCGGATCCTCAATGCTTCTAAAGCGGATGAGGGGAAGTACATTT
GCCAAGGGGTGAACATCTTCGGTTCCGCGGAGATCATAGCTTCTGTGTCTGTCAAAGAACCCAC
AAGGATAGAGCTTACTCCTAAAAGAACAGAGTTAACTGTTGGAGAGAGCATTGTCCTTAACTGC
AAAGCCATGCACGACTCCAGTTTGGATGTCACTTTCTACTGGACACTAAAAGGACAACCTATTG
ATTTTGAGAAAGAAGGCGGACATTTTGAAAGCATCAGGGCTCAAGCATCCTCTGCAGATTTAAT
GATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGACCACAGCAGAC
AGTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGTCCCCCAGGGCCACCTGGAGTGGTCATAG
TGGAGGAGATCACAGAAAGCACAGCCACTCTCTCATGGAGTCCAGCAACTGACAACCACAGCCC
CATCTCTTCCTACAACCTTCAGGCTCGCAGCCCCTTCTCCCTGGGCTGGCAAACAGTGAAGACA
GTCCCTGAAGTCATCACAGGAGACATGGAGTCAGCGATGGCTGTGGACCTAAACCCCTGGGTAG
AATATGAATTCCGAGTGGTGGCCACCAATCCAATTGGGACAGGAGATCCAAGCATTCCATCTCG
AATGATCCGCACAAACGAGGCAGTTCCTAAGACGGCACCCAGCAACGTGAGTGGAGGAAGTGGA
AGAAGGCACGAGTTGGTCATTGCCTGGGAGCCAGTATCAGAAGAGTTTCAGAATGGGGAAGGCT
TCGGCTACATAGTGGCATTCAGACCGAATGGAACACGTGGCTGGAAGGAGAAAATGGTTACTTC
TTCGGATGCTTCCAAGTTCATTTACCGAGACGAAAGTGTCCCTCCTCTCACACCCTTTGAAGTC
AAAGTTGGTGTCTATAATAATAAAGGTGATGGGCCTTTCAGCCAGATTGTAGTCATCTGCTCGG
CTGAGGGAGAACCCACTGCTGCTCCCACTGATGTCACAGCGACCAGTGTGTCGGTGTCAGAGAT
TTTTGTTGTATGGAAACATGTTAAAGAGAGTCTCGGAAGACCACAGGGGTTTGAGATTGGTTAC
TGGAAAGATACCGAGCCAGAAGACTCTGCAGAAACAGTCAGAACCAGAGGGAATGAGTCATTCG
TCATGTTGACGGGATTGGAAGGCGACACACTCTATCACCTCACAGTCAGGGCTTACAATGGAGC
CGGGTATGGGCCACCCAGCAGGGAAGTGAGCGCCACCACCAAGAGGCACCCCCCTAGCGAACCA
CCTGGCAACCTCCGCTGGGAACAGCAGGGTTCCCAGGTTTCCCTAGGCTGGGAGCCTGTCAGAC
CTCTAGCCAACGAGTCTGAAGTCATGGGTTACAAGGTTTTTTATAGGCAAGAGGGTCACAGCAA
AGGTCAAGTTATTGAGACACAGAAACCTCAGGCTGTTGTGCCTCTCCCTGAGGCTGGAGTCTAC
ATTATTGAAGTTCGAGCGTACAGTGAAGGAGGAGATGGAACAGCGAGCTCCCAAATCAGGGTAC
CTTCATATGCAGCTTGAGAAGGCAGCAGCAGACAGAGCGCAGAATGAATGGAGATGGAGTCCTG
AGAAAAGCTTTGAACACACGGGACTACAGATGGTGCATTCTCAGGAGTCCGGGGGGAGAATATG
AGTTACCCATCAGGTTTCTCTTTGGATTTTATAAACGGAGAGGACACTTCTTGGTCCAATAAAA
ATATGCAGATTGTATGTAATGAAATTTTGTAAGCAAAGGTAATTTCTGTCAGATGTATTCCTAA
TTTTTTTAATATGTTGGGATTTGATTTTCTATTTAATGACTCTGAGTGTCAGCCATCCATTGCC
GAGGTGGTCTCTATAGCCTGCTCAAAATCAAATACAAACCCGAGAAGGAAACGTGTTCTCAAGA
CTCTGTGTCTAATGTTTTCCAAACTTCCCATTAGATCACTGCTTCAATACCAAACCAGCAGGAA
ATATGAAGAAATACTTCAATTACTAGGGTCCAGGATAGGGGAAATACATAAAAGAATTCTTAAA
AAACTGTTGTATGACTGAATAGAAAAATAGCAAGATTTTTCCATAGGCCATTCTACATGTGCCC
ATATAGTAAGGTATTAAGGTAGGGAATTTCCATTAGTGGAAGTTGAATAGAGAATGAGTTCAAA
CTGAGTTATTGTCTCCCATGGAGTAACATGGGACGTAAGAGTGAATACAGTCCATGTTTAATGT
CAAAAGATAGTTTAACGTCACGAAAATCGTGACCACGGAAAACATCAACAGCACAAAGCCACAG
GTGCTAATACGAAAGTGCAAAGAGCAGGGGAGAGGGCGCCCCAATTCTCTGCCTGCTGTCAAGG
CAGACGTAGAAATGAGCAAAAGGCTTTCTTCTACTTGCAAGTGTTATAAGGATAAGGAAAGCTG
GTGGAAGAAGGAATGAAACTAATTATTCAAACAAAAAATCCGAGGTTTTAGACACTGTTCCTCA
TCATATGCCACTTACAAATGCTTCCCAGCTCCTGGGGTAAAGAGAGTCTGTTAGGTAGAATGAT
GTTCTTAAAACTAAAACTGAGTTGTGGAAACACAGCATTGCCACAGGGCTTCAGCTAGTCTAGC
CAAAGTCTGCATTGCTGGATTCTGTGAAAATTTCAGTGACAATCCCATTGATGAATTGGAGGAG
TCAGATTAAACCTAAGAGATAATTCATGGGAAGCTCAGAGAGATTGTCCTACTTCCTGAGTGTG
TGATAGGACACAGCACAAGGACACATCAGGGTGAAGATCACTATGAAGAATCCAGAAATGATAC
AGAAGGCATACTAACGTTCCAGAAAGAACCTGAAGATTCTGGCTAAATGAGCAATGCTCATATG
GGGACAAAAGGTAGATTTCATTGCTTTGCCTTTATATGATATGAGCCAATTAACTGTATTTGCA
TCTGTAATAACAAACAGAATGAAAATCCTGAGCTTAGGTAAATGACAGTTGGGATAGTCTATCC
TGAATATCCTATAAAAGTTTTCAGGGTGCAGTGTAACTATCCATCAGTTATTCCCATTCTGTTT
AGAGAGAATTGTGTCCCAGGCAGCTCTAAGCAAAGGAAAGTCAATATAAGAAGATGATTTCAGT
CAACAGACTGTTACTAAGAGAGTGACTATTCAAGCCTATGAATAATCAAACCACGTGGCCTTCC
TCATGTGCCTCCAGGGGAATAGGAGAGGCTGGAGTTCACCAATAAGAATCAAAAGATGAGCTTC
CCAAAGCATGGTGTCACTTGCAGAAACAAATCCTGCATCTGAAAAAAAATATAGAAAGATATTT
TTAAAAAAATATGCTTTTCATATTTGGTAAATTGAGATATTTTCTTCATTTATTATTGATGCTC
TCATTTAGATTATCTGAAGAACTTTAAAAATCAACTTAACTAAATTCTTCTAAAAAAAACCAGT
AAAATAAAAATGTCACAAAATGGCAAATTCTAATTAATCAATATTCCCAAATCACTGCCTGAAT
ATCCACATATAGAATTTCTGATGTCATATTCTCACACAAGTCAGAGATGTGAGGTGCTTTTACT
CAATATGCATAAAATATGTATTTTGCATCATGAACCTATTTAAAATAAAGCAGGTTTTCACTGT
ATCTGTATTTCTGTACCCCACATTTGTTATTTTGTAGCAAGCAGACAACATTCCTATCAAGGAA
CATTATTTTCCAACAACAGTACTGAGAACGATTTTTCCTTGGTGGGATGGTAACCACACAGTCT
TACATCACTGAAGAGACTGTATTTTTCTACAATGCCCACTGAATCATAAGAAAACAGCTCTCCT
TATCATGAGACATTTCATGACAGCAAATGTTTTGCATATGTAACTGAAGGTACTGTGGACTCTG
TGTCGAACCGTTAAGTATGTTGTATACAATCTGTATATATACTATATATAATGGTATATATCAT
GTGGAGGGCACAGTAAGATAATAGTTCTGTGTACTGTTCTTGTAACAATAGACCTTTTTAATAA
ATAACTCCATTTTTATTGACTTTTA

hide sequence

RefSeq Acc Id:

XM_039080701 ⟹ XP_038936629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	15,085,224 - 16,249,318 (-)	NCBI
mRatBN7.2	8	6,803,525 - 7,967,614 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446198	(Get FASTA)	NCBI Sequence Viewer
	XP_017450897	(Get FASTA)	NCBI Sequence Viewer
	XP_017450898	(Get FASTA)	NCBI Sequence Viewer
	XP_017450900	(Get FASTA)	NCBI Sequence Viewer
	XP_038936629	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA13311	(Get FASTA)	NCBI Sequence Viewer
	EDL78504	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009418
	ENSRNOP00000009418.8
	ENSRNOP00000109036
GenBank Protein	P97527	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_446198 ⟸ NM_053746
- Peptide Label:	precursor
- UniProtKB:	P97527 (UniProtKB/Swiss-Prot), A6JN62 (UniProtKB/TrEMBL), F1M173 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSWRLILFLSFTSCLSEYSEALSGLSTSYAALLRIKKSSTSSAFGSKSRPRYSSPSLGTLSV SPPSWRGAAQQYHSPVNLYHSPDAFRQDESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGN PSPTYRWLRNGTEIDLESDYRYSMIDGTFIINNPSESRDSGLYQCLATNTFGSILSREATLQFA YLGNFSGRTRSAVSVREGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYI SKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPTTVTAAKGTTVKM ECFALGNPVPTITWMKVNGYIPSKSRLRKSQAVLEIPNLQLDDAGIYECTAENSRGKNSFRGQL QIYTYPHWVQKLNDTQLDSGSPLQWECKATGKPRPTYRWLKNGAPLLPQSRVDTANGVLAIHSV NQSDAGMYQCLAENKYGAIYASAELKILASPPSFELNQVKKSIIVTKDREVLIECKPQGSPKPA ISWRKGDKAVRGNKRIAILPDGSLRILNASKADEGKYICQGVNIFGSAEIIASVSVKEPTRIEL TPKRTELTVGESIVLNCKAMHDSSLDVTFYWTLKGQPIDFEKEGGHFESIRAQASSADLMIRNI LLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGVVIVEEITESTATLSWSPATDNHSPISSY NLQARSPFSLGWQTVKTVPEVITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSIPSRMIRT NEAVPKTAPSNVSGGSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSDAS KFIYRDESVPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVW KHVKESLGRPQGFEIGYWKDTEPEDSAETVRTRGNESFVMLTGLEGDTLYHLTVRAYNGAGYGP PSREVSATTKRHPPSEPPGNLRWEQQGSQVSLGWEPVRPLANESEVMGYKVFYRQEGHSKGQVI ETQKPQAVVPLPEAGVYIIEVRAYSEGGDGTASSQIRVPSYAGGKITSAQSTLHSLSKWSSVTL LLALMLPSSSW hide sequence

RefSeq Acc Id:	XP_017450898 ⟸ XM_017595409
- Peptide Label:	isoform X1
- UniProtKB:	P97527 (UniProtKB/Swiss-Prot), A6JN62 (UniProtKB/TrEMBL), F1M173 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSWRLILFLSFTSCLSEYSEALSGLSTSYAALLRIKKSSTSSAFGSKSRPRYSSPSLGTLSV SPPSWRGAAQQYHSPVNLYHSPDAFRQDESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGN PSPTYRWLRNGTEIDLESDYRYSMIDGTFIINNPSESRDSGLYQCLATNTFGSILSREATLQFA YLGNFSGRTRSAVSVREGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYI SKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPTTVTAAKGTTVKM ECFALGNPVPTITWMKVNGYIPSKSRLRKSQAVLEIPNLQLDDAGIYECTAENSRGKNSFRGQL QIYTYPHWVQKLNDTQLDSGSPLQWECKATGKPRPTYRWLKNGAPLLPQSRVDTANGVLAIHSV NQSDAGMYQCLAENKYGAIYASAELKILASPPSFELNQVKKSIIVTKDREVLIECKPQGSPKPA ISWRKGDKAVRGNKRIAILPDGSLRILNASKADEGKYICQGVNIFGSAEIIASVSVKEPTRIEL TPKRTELTVGESIVLNCKAMHDSSLDVTFYWTLKGQPIDFEKEGGHFESIRAQASSADLMIRNI LLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGVVIVEEITESTATLSWSPATDNHSPISSY NLQARSPFSLGWQTVKTVPEVITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSIPSRMIRT NEAVPKTAPSNVSGGSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSDAS KFIYRDESVPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVW KHVKESLGRPQGFEIGYWKDTEPEDSAETVRTRGNESFVMLTGLEGDTLYHLTVRAYNGAGYGP PSREVSATTKRHPPSEPPGNLRWEQQGSQVSLGWEPVRPLANESEVMGYKVFYRQEGHSKGQVI ETQKPQAVVPLPEAGVYIIEVRAYSEGGDGTASSQIRVPSYAGGKITSAQSTLHSLSKWSSVTL LLALMLPSSSW hide sequence

RefSeq Acc Id:	XP_017450900 ⟸ XM_017595411
- Peptide Label:	isoform X2
- UniProtKB:	F1M173 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSWRLILFLSFTSCLSEYSEALSGLSTSYAALLRIKKSSTSSAFGSKSRPRYSSPSLGTLSV SPPSWRGAAQQYHSPVNLYHSPDAFRQDESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGN PSPTYRWLRNGTEIDLESDYRYSMIDGTFIINNPSESRDSGLYQCLATNTFGSILSREATLQFA YLGNFSGRTRSAVSVREGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYI SKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPTTVTAAKGTTVKM ECFALGNPVPTITWMKVNGYIPSKSRLRKSQAVLEIPNLQLDDAGIYECTAENSRGKNSFRGQL QIYTYPHWVQKLNDTQLDSGSPLQWECKATGKPRPTYRWLKNGAPLLPQSRVDTANGVLAIHSV NQSDAGMYQCLAENKYGAIYASAELKILASPPSFELNQVKKSIIVTKDREVLIECKPQGSPKPA ISWRKGDKAVRGNKRIAILPDGSLRILNASKADEGKYICQGVNIFGSAEIIASVSVKEPTRIEL TPKRTELTVGESIVLNCKAMHDSSLDVTFYWTLKGQPIDFEKEGGHFESIRAQASSADLMIRNI LLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGVVIVEEITESTATLSWSPATDNHSPISSY NLQARSPFSLGWQTVKTVPEVITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSIPSRMIRT NEAVPKTAPSNVSGGSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSDAS KFIYRDESVPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVW KHVKESLGRPQGFEIGYWKDTEPEDSAETVRTRGNESFVMLTGLEGDTLYHLTVRAYNGAGYGP PSREVSATTKRHPPSEPPGNLRWEQQGSQVSLGWEPVRPLANESEVMGYKVFYRQEGHSKGQVI ETQKPQAVVPLPEAGVYIIEVRAYSEGGDGTASSQIRVPSYAA hide sequence

RefSeq Acc Id:	XP_017450897 ⟸ XM_017595408
- Peptide Label:	isoform X1
- UniProtKB:	P97527 (UniProtKB/Swiss-Prot), A6JN62 (UniProtKB/TrEMBL), F1M173 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSWRLILFLSFTSCLSEYSEALSGLSTSYAALLRIKKSSTSSAFGSKSRPRYSSPSLGTLSV SPPSWRGAAQQYHSPVNLYHSPDAFRQDESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGN PSPTYRWLRNGTEIDLESDYRYSMIDGTFIINNPSESRDSGLYQCLATNTFGSILSREATLQFA YLGNFSGRTRSAVSVREGQGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYI SKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPTTVTAAKGTTVKM ECFALGNPVPTITWMKVNGYIPSKSRLRKSQAVLEIPNLQLDDAGIYECTAENSRGKNSFRGQL QIYTYPHWVQKLNDTQLDSGSPLQWECKATGKPRPTYRWLKNGAPLLPQSRVDTANGVLAIHSV NQSDAGMYQCLAENKYGAIYASAELKILASPPSFELNQVKKSIIVTKDREVLIECKPQGSPKPA ISWRKGDKAVRGNKRIAILPDGSLRILNASKADEGKYICQGVNIFGSAEIIASVSVKEPTRIEL TPKRTELTVGESIVLNCKAMHDSSLDVTFYWTLKGQPIDFEKEGGHFESIRAQASSADLMIRNI LLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGVVIVEEITESTATLSWSPATDNHSPISSY NLQARSPFSLGWQTVKTVPEVITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSIPSRMIRT NEAVPKTAPSNVSGGSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSDAS KFIYRDESVPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVW KHVKESLGRPQGFEIGYWKDTEPEDSAETVRTRGNESFVMLTGLEGDTLYHLTVRAYNGAGYGP PSREVSATTKRHPPSEPPGNLRWEQQGSQVSLGWEPVRPLANESEVMGYKVFYRQEGHSKGQVI ETQKPQAVVPLPEAGVYIIEVRAYSEGGDGTASSQIRVPSYAGGKITSAQSTLHSLSKWSSVTL LLALMLPSSSW hide sequence

Ensembl Acc Id:

ENSRNOP00000009418 ⟸ ENSRNOT00000009418

RefSeq Acc Id:	XP_038936629 ⟸ XM_039080701
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000093216 ⟸ ENSRNOT00000103707

Ensembl Acc Id:

ENSRNOP00000109036 ⟸ ENSRNOT00000162546

Ensembl Acc Id:

ENSRNOP00000101480 ⟸ ENSRNOT00000163383

Protein Domains

Fibronectin type-III Ig-like Ig-like C2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P97527-F1-model_v2	AlphaFold	P97527	1-1099	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621302	AgrOrtholog
BioCyc Gene	G2FUF-31745	BioCyc
Ensembl Genes	ENSRNOG00000007038	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009418	ENTREZGENE
	ENSRNOT00000009418.8	UniProtKB/Swiss-Prot
	ENSRNOT00000162546	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
KEGG Report	rno:114589	UniProtKB/Swiss-Prot
NCBI Gene	114589	ENTREZGENE
PANTHER	PROTEIN SIDEKICK	UniProtKB/Swiss-Prot
	PTHR44170:SF17	UniProtKB/Swiss-Prot
Pfam	fn3	UniProtKB/Swiss-Prot
	I-set	UniProtKB/Swiss-Prot
	Ig_3	UniProtKB/Swiss-Prot
PhenoGen	Cntn5	PhenoGen
PROSITE	FN3	UniProtKB/Swiss-Prot
	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007038	RatGTEx
SMART	FN3	UniProtKB/Swiss-Prot
	IGc2	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
UniProt	A0A8I6AFE0_RAT	UniProtKB/TrEMBL
	A0ABK0LF52_RAT	UniProtKB/TrEMBL
	A0ABK0LSQ3_RAT	UniProtKB/TrEMBL
	A6JN62	ENTREZGENE, UniProtKB/TrEMBL
	CNTN5_RAT	UniProtKB/Swiss-Prot
	F1M173	ENTREZGENE, UniProtKB/TrEMBL
	P97527	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Cntn5	contactin 5			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Cntn5	contactin 5			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expression restricted to cerebrum and the cerebellum	61556
gene_product	member of the immunoglobulin superfamily	61556
gene_protein	1099 amino acids	61556

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar