Pbld1 (phenazine biosynthesis-like protein domain containing 1) - Rat Genome Database

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Gene: Pbld1 (phenazine biosynthesis-like protein domain containing 1) Rattus norvegicus
Analyze
Symbol: Pbld1
Name: phenazine biosynthesis-like protein domain containing 1
RGD ID: 621263
Description: Predicted to enable identical protein binding activity and isomerase activity. Predicted to be involved in several processes, including antiviral innate immune response; maintenance of gastrointestinal epithelium; and positive regulation of canonical NF-kappaB signal transduction. Predicted to act upstream of or within with a positive effect on negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Mawbp; MAWD binding protein; MGC93185; Pbld; phenazine biosynthesis-like domain-containing protein; phenazine biosynthesis-like protein domain containing
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,549,974 - 25,565,390 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2025,549,974 - 25,565,226 (-)EnsemblGRCr8
mRatBN7.22025,551,274 - 25,566,543 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,551,275 - 25,565,614 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2026,244,784 - 26,292,585 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,597,808 - 25,645,613 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,183,814 - 26,198,121 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,103,300 - 27,118,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,103,317 - 27,117,663 (-)Ensemblrn6Rnor6.0
Rnor_5.02028,943,838 - 28,959,154 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42025,413,994 - 25,428,299 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2026,847,142 - 26,861,446 (-)NCBICelera
RGSC_v3.12025,427,793 - 25,442,098 (+)NCBI
Cytogenetic Map20p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
carbon nanotube  (ISO)
chlorohydrocarbon  (EXP)
chlorpyrifos  (ISO)
cisplatin  (EXP)
clothianidin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dibenzofurans  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
genistein  (ISO)
glafenine  (EXP)
glucose  (ISO)
glycidol  (EXP)
hydrogen peroxide  (ISO)
lead diacetate  (EXP,ISO)
leflunomide  (EXP)
levofloxacin  (EXP)
manganese(II) chloride  (EXP)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP,ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (EXP)
nickel dichloride  (EXP)
nimesulide  (EXP)
nitrofen  (EXP)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorododecanoic acid  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenformin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
trametinib  (ISO)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning and sequencing of a novel human gene which encodes a putative hydroxylase. Iriyama C, etal., J Hum Genet 2001;46(5):289-92.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:17929853   PMID:19056867   PMID:23376485   PMID:23533145   PMID:23687415   PMID:25416956  


Genomics

Comparative Map Data
Pbld1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,549,974 - 25,565,390 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2025,549,974 - 25,565,226 (-)EnsemblGRCr8
mRatBN7.22025,551,274 - 25,566,543 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,551,275 - 25,565,614 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2026,244,784 - 26,292,585 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,597,808 - 25,645,613 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,183,814 - 26,198,121 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,103,300 - 27,118,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,103,317 - 27,117,663 (-)Ensemblrn6Rnor6.0
Rnor_5.02028,943,838 - 28,959,154 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42025,413,994 - 25,428,299 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2026,847,142 - 26,861,446 (-)NCBICelera
RGSC_v3.12025,427,793 - 25,442,098 (+)NCBI
Cytogenetic Map20p11NCBI
PBLD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,282,660 - 68,332,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,282,657 - 68,334,114 (-)Ensemblhg38GRCh38
GRCh371070,042,417 - 70,092,685 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361069,712,423 - 69,762,690 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1063,317,016 - 63,367,286 (-)NCBICelera
Cytogenetic Map10q21.3ENTREZGENE
HuRef1064,042,459 - 64,092,943 (-)NCBIHuRef
CHM1_11070,324,186 - 70,374,475 (-)NCBICHM1_1
T2T-CHM13v2.01069,151,835 - 69,202,137 (-)NCBIT2T-CHM13v2.0
Pbld1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,896,404 - 62,913,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,895,941 - 62,913,741 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381063,060,625 - 63,077,964 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1063,060,162 - 63,077,962 (+)Ensemblmm10GRCm38
MGSCv371062,524,365 - 62,540,293 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361062,456,974 - 62,472,902 (+)NCBIMGSCv36mm8
Celera1064,163,141 - 64,178,081 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.53NCBI
Pbld
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542520,584,644 - 20,620,988 (-)Ensembl
ChiLan1.0NW_00495542520,564,296 - 20,620,988 (-)NCBIChiLan1.0ChiLan1.0
PBLD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,445,950 - 80,496,127 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,451,269 - 80,501,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01064,766,873 - 64,817,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,077,445 - 67,126,980 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1067,077,445 - 67,126,980 (-)EnsemblpanPan2panpan1.1
PBLD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1419,514,256 - 19,558,515 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl419,515,050 - 19,558,335 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha419,646,585 - 19,690,978 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0419,784,051 - 19,828,752 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl419,784,177 - 19,828,491 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1419,666,513 - 19,710,931 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0419,888,619 - 19,933,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,231,931 - 20,276,333 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pbld
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,450,336 - 61,505,700 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,984,783 - 9,998,858 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,943,061 - 9,998,421 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PBLD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,440,778 - 71,487,480 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11471,442,850 - 71,487,542 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,502,975 - 77,528,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PBLD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1963,061,291 - 63,108,098 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl963,084,627 - 63,106,874 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604823,829,877 - 23,876,174 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pbld
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247542,640,884 - 2,663,990 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247542,525,486 - 2,697,705 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pbld
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11823,608,372 - 23,624,520 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pbld1
38 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:406
Count of miRNA genes:210
Interacting mature miRNAs:254
Transcripts:ENSRNOT00000000434
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH127859  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,552,082 - 25,552,275 (+)MAPPERmRatBN7.2
Rnor_6.02027,104,109 - 27,104,301NCBIRnor6.0
Rnor_5.02028,944,647 - 28,944,839UniSTSRnor5.0
RGSC_v3.42025,427,298 - 25,427,490UniSTSRGSC3.4
Celera2026,847,951 - 26,848,143UniSTS
Cytogenetic Map20p11UniSTS
RH134084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,551,324 - 25,551,535 (+)MAPPERmRatBN7.2
Rnor_6.02027,103,351 - 27,103,561NCBIRnor6.0
Rnor_5.02028,943,889 - 28,944,099UniSTSRnor5.0
RGSC_v3.42025,428,038 - 25,428,248UniSTSRGSC3.4
Celera2026,847,193 - 26,847,403UniSTS
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 139 91 90 59 48 59 6 310 146 9 120 81 92 31 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000000434   ⟹   ENSRNOP00000000434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,549,974 - 25,564,502 (-)Ensembl
mRatBN7.2 Ensembl2025,551,275 - 25,565,579 (-)Ensembl
Rnor_6.0 Ensembl2027,103,317 - 27,117,663 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116726   ⟹   ENSRNOP00000093655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,551,092 - 25,564,314 (-)Ensembl
mRatBN7.2 Ensembl2025,552,392 - 25,565,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000139362   ⟹   ENSRNOP00000105797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2025,549,974 - 25,565,226 (-)Ensembl
RefSeq Acc Id: NM_138530   ⟹   NP_612539
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,549,974 - 25,564,301 (-)NCBI
mRatBN7.22025,551,274 - 25,565,601 (-)NCBI
Rnor_6.02027,103,300 - 27,117,605 (-)NCBI
Rnor_5.02028,943,838 - 28,959,154 (-)NCBI
RGSC_v3.42025,413,994 - 25,428,299 (+)RGD
Celera2026,847,142 - 26,861,446 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601536   ⟹   XP_017457025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,550,725 - 25,565,338 (-)NCBI
mRatBN7.22025,551,274 - 25,566,543 (-)NCBI
Rnor_6.02027,103,300 - 27,118,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098408   ⟹   XP_038954336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,550,725 - 25,557,769 (-)NCBI
mRatBN7.22025,551,274 - 25,558,920 (-)NCBI
RefSeq Acc Id: XM_063278946   ⟹   XP_063135016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,550,725 - 25,565,390 (-)NCBI
RefSeq Acc Id: XM_063278947   ⟹   XP_063135017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,550,725 - 25,565,320 (-)NCBI
RefSeq Acc Id: NP_612539   ⟸   NM_138530
- UniProtKB: Q8R423 (UniProtKB/Swiss-Prot),   Q68G31 (UniProtKB/Swiss-Prot),   A6JKZ3 (UniProtKB/TrEMBL),   A0A8I6AK08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457025   ⟸   XM_017601536
- Peptide Label: isoform X1
- UniProtKB: Q8R423 (UniProtKB/Swiss-Prot),   Q68G31 (UniProtKB/Swiss-Prot),   A6JKZ3 (UniProtKB/TrEMBL),   A0A8I6AK08 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000434   ⟸   ENSRNOT00000000434
RefSeq Acc Id: XP_038954336   ⟸   XM_039098408
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000093655   ⟸   ENSRNOT00000116726
RefSeq Acc Id: XP_063135016   ⟸   XM_063278946
- Peptide Label: isoform X1
- UniProtKB: Q8R423 (UniProtKB/Swiss-Prot),   Q68G31 (UniProtKB/Swiss-Prot),   A6JKZ3 (UniProtKB/TrEMBL),   A0A8I6AK08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135017   ⟸   XM_063278947
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AK08 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105797   ⟸   ENSRNOT00000139362

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68G31-F1-model_v2 AlphaFold Q68G31 1-288 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701570
Promoter ID:EPDNEW_R12093
Type:multiple initiation site
Name:Pbld1_1
Description:phenazine biosynthesis-like protein domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02027,117,640 - 27,117,700EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621263 AgrOrtholog
BioCyc Gene G2FUF-3813 BioCyc
Ensembl Genes ENSRNOG00000000386 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000434 ENTREZGENE
  ENSRNOT00000000434.7 UniProtKB/Swiss-Prot
  ENSRNOT00000116726 ENTREZGENE
Gene3D-CATH Diaminopimelate Epimerase, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7126368 IMAGE-MGC_LOAD
InterPro Phenazine_PhzF UniProtKB/Swiss-Prot
KEGG Report rno:171564 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93185 IMAGE-MGC_LOAD
NCBI Gene 171564 ENTREZGENE
PANTHER PHENAZINE BIOSYNTHESIS-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  PTHR13774 UniProtKB/Swiss-Prot
Pfam PhzC-PhzF UniProtKB/Swiss-Prot
PhenoGen Pbld1 PhenoGen
PIRSF PhzC_PhzF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000386 RatGTEx
Superfamily-SCOP Diaminopimelate epimerase-like UniProtKB/Swiss-Prot
UniProt A0A8I6AK08 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LY10_RAT UniProtKB/TrEMBL
  A6JKZ3 ENTREZGENE, UniProtKB/TrEMBL
  PBLD_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8R423 ENTREZGENE
UniProt Secondary Q8R423 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-08 Pbld1  phenazine biosynthesis-like protein domain containing 1  Pbld  phenazine biosynthesis-like protein domain containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-19 Pbld  phenazine biosynthesis-like protein domain containing  Mawbp  MAWD binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Mawbp  MAWD binding protein      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Mawbp  MAWD binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL