Cd93 (CD93 molecule) - Rat Genome Database

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Gene: Cd93 (CD93 molecule) Rattus norvegicus
Analyze
Symbol: Cd93
Name: CD93 molecule
RGD ID: 621251
Description: Predicted to enable complement component C1q complex binding activity and signaling receptor activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within angiogenesis. Predicted to be located in cell surface; cytoplasmic vesicle; and plasma membrane. Orthologous to human CD93 (CD93 molecule); INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C1q/MBL/SPA receptor; C1qR(p); C1qr1; C1qRp; CD93 antigen; cell surface antigen AA4; complement component 1 q subcomponent receptor 1; complement component 1, q subcomponent, receptor 1; complement component C1q receptor; Ly68; lymphocyte antigen 68
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,345,019 - 156,351,537 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3156,345,019 - 156,351,537 (-)EnsemblGRCr8
mRatBN7.23135,891,859 - 135,898,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3139,834,863 - 139,841,377 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,418,996 - 148,425,510 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,117,490 - 146,124,008 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,778,798 - 142,783,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)Ensemblrn6Rnor6.0
Rnor_5.03149,189,164 - 149,194,140 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43137,188,528 - 137,193,457 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3134,737,086 - 134,742,072 (-)NCBICelera
RGSC_v3.13137,094,100 - 137,099,030 (-)NCBI
Cytogenetic Map3q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2,4-trimethylbenzene  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-butoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (EXP)
acetamide  (EXP)
aconitine  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
anthracen-2-amine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
chloroprene  (EXP)
chlorpyrifos  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
cypermethrin  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fluorescein 5-isothiocyanate  (ISO)
folic acid  (ISO)
gardiquimod  (ISO)
GSK-J4  (ISO)
hydrogen sulfide  (ISO)
lead diacetate  (EXP,ISO)
leflunomide  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
PCB138  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
titanium dioxide  (EXP)
toluene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
undecane  (EXP)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (IBA,IEA,ISO)
cell adhesion  (IEA)
cell-cell adhesion  (IBA,IEA,ISO,ISS)

Cellular Component
cell periphery  (IEA)
cell surface  (IEA,ISO)
cytoplasmic vesicle  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular and cellular properties of the rat AA4 antigen, a C-type lectin-like receptor with structural homology to thrombomodulin. Dean YD, etal., J Biol Chem 2000 Nov 3;275(44):34382-92.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Characterization and molecular cloning of rat C1qRp, a receptor on NK cells. Lovik G, etal., Eur J Immunol 2000 Dec;30(12):3355-62.
4. Human C1qRp is identical with CD93 and the mNI-11 antigen but does not bind C1q. McGreal EP, etal., J Immunol. 2002 May 15;168(10):5222-32.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Nine Genes Mediate the Therapeutic Effects of Iodine-131 Radiotherapy in Thyroid Carcinoma Patients. Shuwen H, etal., Dis Markers. 2020 Jun 16;2020:9369341. doi: 10.1155/2020/9369341. eCollection 2020.
Additional References at PubMed
PMID:9047234   PMID:9324354   PMID:10092817   PMID:11465094   PMID:11781389   PMID:19285506   PMID:23979707   PMID:24106277   PMID:36197773   PMID:36336138  


Genomics

Comparative Map Data
Cd93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,345,019 - 156,351,537 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3156,345,019 - 156,351,537 (-)EnsemblGRCr8
mRatBN7.23135,891,859 - 135,898,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3139,834,863 - 139,841,377 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,418,996 - 148,425,510 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,117,490 - 146,124,008 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,778,798 - 142,783,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)Ensemblrn6Rnor6.0
Rnor_5.03149,189,164 - 149,194,140 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43137,188,528 - 137,193,457 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3134,737,086 - 134,742,072 (-)NCBICelera
RGSC_v3.13137,094,100 - 137,099,030 (-)NCBI
Cytogenetic Map3q41NCBI
CD93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,079,360 - 23,086,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,065,139 - 23,086,324 (-)Ensemblhg38GRCh38
GRCh372023,059,997 - 23,066,961 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,007,993 - 23,014,977 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342023,007,994 - 23,014,977NCBI
Celera2023,133,371 - 23,140,349 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,021,512 - 23,028,490 (-)NCBIHuRef
CHM1_12023,060,691 - 23,067,675 (-)NCBICHM1_1
T2T-CHM13v2.02023,120,610 - 23,145,801 (-)NCBIT2T-CHM13v2.0
Cd93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,278,571 - 148,285,455 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,278,560 - 148,285,483 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382148,436,651 - 148,443,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,436,640 - 148,443,563 (-)Ensemblmm10GRCm38
MGSCv372148,262,387 - 148,269,271 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362148,128,092 - 148,134,976 (-)NCBIMGSCv36mm8
Celera2149,711,496 - 149,718,416 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.48NCBI
Cd93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,252,580 - 30,255,313 (-)Ensembl
ChiLan1.0NW_00495541530,244,231 - 30,255,184 (-)NCBIChiLan1.0ChiLan1.0
CD93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,952,735 - 23,964,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12023,949,569 - 23,961,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,022,834 - 23,033,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,375,310 - 23,384,789 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,377,777 - 23,384,789 (-)EnsemblpanPan2panpan1.1
CD93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124559,570 - 565,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24560,025 - 563,211 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha24577,238 - 591,243 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.024948,872 - 962,890 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24956,336 - 962,371 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124547,813 - 561,814 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024657,002 - 663,862 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024931,201 - 945,209 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cd93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640149,105,642 - 149,110,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,526,158 - 2,533,558 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,526,179 - 2,531,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,233,933 - 30,239,692 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11730,233,275 - 30,240,041 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,381,631 - 34,387,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,074,823 - 52,082,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl252,074,730 - 52,082,029 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660786,886,388 - 6,893,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474122,908,327 - 22,914,770 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474122,908,525 - 22,914,781 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cd93
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15127,999,733 - 128,005,038 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cd93
36 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:405
Count of miRNA genes:221
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000034256
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
RH137518  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,894,126 - 135,894,268 (+)MAPPERmRatBN7.2
Rnor_6.03142,779,533 - 142,779,674NCBIRnor6.0
Rnor_5.03149,189,899 - 149,190,040UniSTSRnor5.0
RGSC_v3.43137,189,263 - 137,189,404UniSTSRGSC3.4
Celera3134,737,821 - 134,737,962UniSTS
Cytogenetic Map3q41UniSTS
Ly68  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,897,842 - 135,898,180 (+)MAPPERmRatBN7.2
Rnor_6.03142,783,239 - 142,783,576NCBIRnor6.0
Rnor_5.03149,193,605 - 149,193,942UniSTSRnor5.0
RGSC_v3.43137,192,922 - 137,193,259UniSTSRGSC3.4
Celera3134,741,537 - 134,741,874UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 91 59 6 355 191 11 140 81 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000034256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3142,781,424 - 142,783,593 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3156,345,019 - 156,351,537 (-)Ensembl
mRatBN7.2 Ensembl3135,891,859 - 135,898,378 (-)Ensembl
Rnor_6.0 Ensembl3142,778,770 - 142,783,774 (-)Ensembl
RefSeq Acc Id: NM_053383   ⟹   NP_445835
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83156,345,019 - 156,351,537 (-)NCBI
mRatBN7.23135,891,859 - 135,898,378 (-)NCBI
Rnor_6.03142,778,798 - 142,783,774 (-)NCBI
Rnor_5.03149,189,164 - 149,194,140 (-)NCBI
RGSC_v3.43137,188,528 - 137,193,457 (-)RGD
Celera3134,737,086 - 134,742,072 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_445835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF80402 (Get FASTA)   NCBI Sequence Viewer  
  AAG01572 (Get FASTA)   NCBI Sequence Viewer  
  EDL95099 (Get FASTA)   NCBI Sequence Viewer  
  EDL95100 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089608
  ENSRNOP00000089608.1
GenBank Protein Q9ET61 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445835   ⟸   NM_053383
- Peptide Label: precursor
- UniProtKB: Q9ET61 (UniProtKB/Swiss-Prot),   Q9JIZ6 (UniProtKB/Swiss-Prot),   A6K7C0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-type lectin   EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ET61-F1-model_v2 AlphaFold Q9ET61 1-643 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621251 AgrOrtholog
BioCyc Gene G2FUF-47508 BioCyc
Ensembl Genes ENSRNOG00000024799 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000076493 ENTREZGENE
  ENSRNOT00000076493.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  C-type_lectin_domain UniProtKB/Swiss-Prot
  cEGF UniProtKB/Swiss-Prot
  CTDL_fold UniProtKB/Swiss-Prot
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot
  NOTCH1_EGF-like UniProtKB/Swiss-Prot
KEGG Report rno:84398 UniProtKB/Swiss-Prot
NCBI Gene 84398 ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN FAMILY 14 MEMBER A PRECURSOR-RELATED UniProtKB/Swiss-Prot
  CHONDROLECTIN VARIANT CHODLFDELTAE UniProtKB/Swiss-Prot
Pfam cEGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  Lectin_C UniProtKB/Swiss-Prot
PhenoGen Cd93 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000024799 RatGTEx
SMART CLECT UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF56436 UniProtKB/Swiss-Prot
  SSF57184 UniProtKB/Swiss-Prot
UniProt A6K7C0 ENTREZGENE, UniProtKB/TrEMBL
  C1QR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9JIZ6 ENTREZGENE
UniProt Secondary Q9JIZ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Cd93  CD93 molecule  Cd93  CD93 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Cd93  CD93 antigen  C1qr1  complement component 1, q subcomponent, receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 C1qr1  complement component 1, q subcomponent, receptor 1    lymphocyte antigen 68  Name updated 1299863 APPROVED
2004-09-10 C1qr1  lymphocyte antigen 68  Ly68    Symbol and Name updated 1299863 APPROVED
2002-08-07 Ly68  lymphocyte antigen 68      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression present on endothelial cells, platelets, undifferentiated monocytes (ED1+ cells), and circulating NK cells 633262