Zfp260 (zinc finger protein 260) - Rat Genome Database

Name: Zfp260
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Zfp260 (zinc finger protein 260) Rattus norvegicus

Analyze

Symbol:

Zfp260

Name:

zinc finger protein 260

RGD ID:

621205

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF260 (zinc finger protein 260); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

OZF; pancreas zinc finger protein; pancreas-only zinc finger protein 1; POZF-1; zfp-260; zinc finger protein 146; Znf146; Znf260

RGD Orthologs

Alliance Genes

More Info

more info ...

Related Pseudogenes:

Zfp260-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	94,469,861 - 94,477,377 (+)	NCBI		GRCr8
mRatBN7.2	1	85,336,567 - 85,349,896 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,336,618 - 85,350,067 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,754,671 - 90,762,156 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,223,696 - 99,231,215 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	92,512,927 - 92,520,412 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	88,452,133 - 88,465,110 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,451,958 - 88,453,578 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,457,594 - 88,465,110 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	89,619,190 - 89,626,706 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,141,167 - 85,144,447 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,219,287 - 85,220,864 (+)	NCBI
Celera	1	79,720,654 - 79,723,934 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

aflatoxin B1 (ISO)

alpha-phellandrene (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

calyculin a (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dichloromethane (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (EXP)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

furan (EXP)

gentamycin (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

miconazole (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cytosol (ISO)

nucleoplasm (ISO)

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	The zinc finger protein OZF (ZNF146) is overexpressed in colorectal cancer.	Ferbus D, etal., J Pathol 2003 Jun;200(2):177-82.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:15489334	PMID:16166646

Genomics

Comparative Map Data

Zfp260
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	94,469,861 - 94,477,377 (+)	NCBI		GRCr8
mRatBN7.2	1	85,336,567 - 85,349,896 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,336,618 - 85,350,067 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,754,671 - 90,762,156 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,223,696 - 99,231,215 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	92,512,927 - 92,520,412 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	88,452,133 - 88,465,110 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,451,958 - 88,453,578 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,457,594 - 88,465,110 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	89,619,190 - 89,626,706 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,141,167 - 85,144,447 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	85,219,287 - 85,220,864 (+)	NCBI
Celera	1	79,720,654 - 79,723,934 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

ZNF260
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	36,510,687 - 36,528,271 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	36,510,687 - 36,528,271 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	37,001,589 - 37,019,173 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	41,693,434 - 41,711,010 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	33,786,507 - 33,804,162 (-)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	33,469,757 - 33,487,418 (-)	NCBI		HuRef
CHM1_1	19	37,002,174 - 37,019,833 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	39,185,915 - 39,203,539 (-)	NCBI		T2T-CHM13v2.0

Zfp260
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	29,794,207 - 29,807,047 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	29,794,202 - 29,807,047 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,094,782 - 30,107,622 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,094,777 - 30,107,622 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	30,880,095 - 30,892,633 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	22,374,526 - 22,387,084 (+)	NCBI		MGSCv36	mm8
MGSCv36	7	29,803,836 - 29,816,374 (+)	NCBI		MGSCv36	mm8
Celera	7	24,685,371 - 24,697,725 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	17.26	NCBI

Znf260
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	2,183,596 - 2,198,443 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	2,183,596 - 2,198,443 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF260
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	42,650,854 - 42,674,141 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	44,532,787 - 44,556,643 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	33,469,678 - 33,487,800 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	43,276,245 - 43,294,371 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	43,289,822 - 43,291,060 (+)	Ensembl	panpan1.1		panPan2

ZNF260
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,128,638 - 116,158,960 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,142,328 - 116,143,566 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1

Znf260
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	11,645,983 - 11,664,855 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936922	432,758 - 433,987 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936922	415,815 - 419,076 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF260
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,847,013 - 45,880,709 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,858,074 - 45,882,107 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	41,303,023 - 41,323,794 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF260
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	31,368,786 - 31,381,940 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	31,369,241 - 31,370,479 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	9,168,992 - 9,187,788 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf260
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	10,689,551 - 10,704,101 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp260
105 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	174
Count of miRNA genes:	133
Interacting mature miRNAs:	145
Transcripts:	ENSRNOT00000049877, ENSRNOT00000074301
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	78430754	91209302	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	83547917	128547917	Rat

Markers in Region

D1Bda10

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	85,346,425 - 85,346,740 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	88,461,640 - 88,461,954	NCBI	Rnor6.0
Rnor_6.0	1	88,451,836 - 88,452,150	NCBI	Rnor6.0
Rnor_5.0	1	89,613,432 - 89,613,746	UniSTS	Rnor5.0
Rnor_5.0	1	89,623,236 - 89,623,550	UniSTS	Rnor5.0
RGSC_v3.4	1	85,141,203 - 85,141,517	UniSTS	RGSC3.4
Celera	1	79,720,690 - 79,721,004	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	28	19	6	15	6	1	1	74	24	34	11	1
Low	2	15	38	35	4	35	7	10		11	7		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI303170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO575606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U56862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000049877 ⟹ ENSRNOP00000047459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	85,344,937 - 85,349,891 (+)	Ensembl
Rnor_6.0 Ensembl	1	88,457,594 - 88,465,110 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000074301 ⟹ ENSRNOP00000065656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	85,336,618 - 85,350,067 (+)	Ensembl
Rnor_6.0 Ensembl	1	88,451,958 - 88,453,578 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103714 ⟹ ENSRNOP00000088893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	85,336,923 - 85,349,904 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113539 ⟹ ENSRNOP00000087535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	85,336,619 - 85,350,067 (+)	Ensembl

RefSeq Acc Id:

NM_017364 ⟹ NP_059060

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	94,469,861 - 94,477,377 (+)	NCBI
mRatBN7.2	1	85,342,380 - 85,349,896 (+)	NCBI
Rnor_6.0	1	88,457,594 - 88,465,110 (+)	NCBI
Rnor_5.0	1	89,619,190 - 89,626,706 (+)	NCBI
RGSC_v3.4	1	85,141,167 - 85,144,447 (+)	RGD
Celera	1	79,720,654 - 79,723,934 (+)	RGD

Sequence:

show sequence

CAAGTTAAAAGTCTGCGGTTCAAACAAAAAACCTGGGTGTCTGAGAAGAACATCGATCTGCGGA
CGCAGCCTCTGGAGTTTATACACAGATAAGGACACAGGATGAAAGACTCATGAGTTAAGTCTCA
TCTTTCTGTATAGAGATAGACTAACGACAAATTCAGAAAACCTAGAAACAAAGTATTTCCTGTG
GGCACAGACATTGGTTCTGCAAGAGTCCCTCCTATATATAGGATCCAGATGAAAAGAAAGTGAA
CTGTGATTTCCCCACATTCCTCATTTCTGAACATGAGAGAACTGTAAGGAAGAACCATTAACAC
AAAGACAGTTCTGTATTTCAGTCCCTTGTAACCACATCTCCGGTCACTCACATAAAAATCTCTC
ATATATCTGGCTTGACTGGACACTTACGAATTAATATTGAAAAGAAATTGTACGTATTCAGTGA
ATGTGGCAAAGCGTTCATCCAACTTCAGTAGATGCTAGGCGAGAATCCTTGTGCGAAACAGAAT
GTTGGAAAGCCTTCAGCCCGAGTCAGAGCTTCTGCATGATGAACCTGATCCTGGAGAGAAAGTT
TATGAATGTGATGAATGTAGGAAAACCTTTAGCCTAGAACAACACTTTGTGGAACATAAGAAAA
CGCACGGTGGGGAGAAGTCACCCGAGTGTACCGGATGTGGTGAAGAGTTCTCGAAAGCCTCTTC
ACTTACTCGACATCTGAGAAGTCGCTCACGGAGGGAATCATATAAGTGTGGTAACTGTGGGAGA
ACCTTCAGCCAGAGAGGAAACTTCCTTTCTCACCAGAAACAACATGCTGAAGAGAGACCCAGTG
AGTCTAAGAAAACTCCCGTCCCCATGACAACCATCGTCAGAAATCAGAGAAACGCCGGGAATAA
ACCATATGCGTGTAAGGAGTGTGGGAAAGCCTTTAATGGCAAATCATATCTCAAAGAACATGAG
AAAATTCATACCGGAGAGAAACCATTTGAATGTAATCAGTGTGGTAGAGCCTTCAGCCAGAAGC
AGTACCTCATTAAACACCAGAACGTCCACAGTGGGAAGAAGCCTTTTAAGTGTAATGAGTGTGG
TAAGGCTTTTAGCCAGAAAGAAAACCTCATTATACACCAGAGAATCCATACCGGAGAGAAGCCT
TATGAATGTAAAGGGTGTGGGAAGGCCTTCATTCAGAAATCAAGCCTCATCAGACACCAGAGGA
GCCATACTGGAGAGAAACCGTACACATGTAAGGAATGTGGGAAAGCCTTCAGCGGCAAATCAAA
CCTGACTGAGCATGAGAAAATTCATATTGGAGAGAAACCCTATAAATGTAACGAGTGTGGAACA
ATTTTCAGGCAGAAGCAGTACCTCATCAAACATCACAACATTCACACGGGCGAGAAGCCATATG
AGTGCAATAAGTGCGGAAAGGCCTTTTCTCGAATCACGTCGCTTATTGTGCATGTGAGAATTCA
CACAGGCGATAAGCCCTATGAGTGTAAAGTCTGTGGGAAAGCCTTCTGTCAGAGTTCGTCTCTA
ACCGTGCATATGAGGAGCCACACGGGTGAGAAACCGTATGGCTGCAATGAGTGTGGGAAGGCTT
TTTCTCAGTTCTCCACTCTTGCTTTACACATGAGAATCCACACTGGCGAGAAGCCTTATCAGTG
CAGTGAGTGTGGGAAGGCCTTCAGCCAGAAGTCCCATCACATCAGACACCAGAGAATCCATATT
CACTAAAACTCTTTGAATGCCTTAGGTGTACTAGCACTTGAGCAGAGTGTGTGGTTAGCAATGT
ATCAAAGGGTTTGTCTTACACTAATGTTACACAAATGTAGGAAATGCTTCTGTAGTGACTCACA
CCTTAAAATACAAAGGTATTTAATAGGATAGATCATAGCATTATATATACTTCCCAGGCTCTTA
CAAGAAACATTATTAAATTCTAATTTTAGGAGTCCAGTGATTCCAGGTAGGGTTGTCTTGTAGA
GCTTATCAACTGTATCAAGATAAAATGAGCAATATAAAGGTTTGAAATGAAGAGGCAAAAAATA
TTTTTGATATACACTTTGGTATATAGATAATTTGTAAAATGCGTTTTTTCAGAGAAGGCGTTTT
GGGGCAGATCCCCCTATGTACATAGCCCAGGGTGACCTTAAACTCACTATGTAGCCCAAGTTGG
CCTCATGTTTCTTCTGATCCACATACTCCGCCTCCCAGTGCTGCAGTTCAGACATTGCCATGCC
AACTCAAGGTCTTTGTTGGTAAAGTTGTCCAAACTTGAGGTCAGAACAGGATACTGAATCTAGA
ATCATGAATGAGTTCACAGAGGATCGGTAAGATTGTGGCAGTGTTCCAGGTCAATGGGAAAATC
GTGGATGACTGAAAAAAATAATCTCAGGATAATTAACTCTTTTCGTGGGAAAAGACTAGGCCTC
TGATGTCATCACTGATTAAGTATTTCTTAGGAACTATGGCGTCCCTGCAGAACGTAAAGCTTTG
TATAAGAATTTCCTGATTTTTCCAAGACCTTGAAGTAGGAAGCCAAATACAGATTCTGGAATCC
TCAACTGTTCCTCTCGAGCATTTCTATGTATTCTCAAGGAGCCGACATGCTTATGTGGGGAGTC
ACGCATCAGTTCATCACAGCATAAATTACAGCGGAAAATGGGTGCGGGCGCAGGTGTTCGTTGT
TTGCAAAGTAGATGAAGAAAATGTAACCGTCATTCGGTAGAATGCTCTAGCAGCCAAGCCCAAC
AGGTGAATCTGTGTGTTAACAGCAAAAGAATTCATCAGTGTGAAGAAATTGAAGCGGTAACTAT
GTTGTGATTCCTGCATTAAATTTGAATAAAACTCACTTCTTATCTACTCTGGTACTAAGCATCG
GTTATGGGAAACTTCTCTAAAACTAGAATCCGGAGGGCATGTGTGGTGGCTGCTGTTACAGTGA
CAGTGGAGTTCCGTGGAAAGGAAGTTGTCACAAAGCAGGGTAATTTAAATGCTACTTCAGCTTT
CTAGTTAAACACCTACTTTCCAAGTAGAGAGGTTCCAAATAAATGGAACAAATCGATAGTTGGT
TCTACATTGTAGCAACATGTATTCCTTGTTCTCTTGCTTGTCTGGCTTAGGTGTGGATGAGATG
TACTGAGATCCACATTACTACAACATTCCCGTCATGCGTGTGTGCATCCCAAGGCCCCTCGTGG
ATATCTGAAGCCTTGTATATTATTAACTCTCTGTATCGGGTTTCCTATGAGCATACACACCTAG
GAAGATGTGTATAGCATCACAAGGGTCTTCAAGTAACAGAATTACAGCTTCTCTTTCACATCAA
TATTCTTGGGCTTTGGAATCATTGTTAAGTAAAATAAATGTCGCTGGGTAGTTTCTGCCCATTG
ATTGGACTCAGACTAATAAAGTTTGGAAAAGTCCTGTCCTGATCTTTTTGTTTTTCTTGTGCTG
TCGTCGGTTTGGTCCTTTTGCATGGGGCCTGGATTCCTCAGTGCGCTAGACCGTGCCCAAAGAT
TGGGGATTCTGTCCTTAGGTGTGGAGGTAGTGTTGTCTTACCATGACTAACTGGATCGTGAAAA
CTGAAAACTCATGGAATGTCACATCAACTTTCATTGTCCAGTTTGACTCTGGAATAAAGCTAGA
ATTTGACCGTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_059060	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB01227	(Get FASTA)	NCBI Sequence Viewer
	AAH99805	(Get FASTA)	NCBI Sequence Viewer
	EDM07799	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047459
	ENSRNOP00000047459.3
	ENSRNOP00000065656.1
	ENSRNOP00000087535.1
	ENSRNOP00000088893.1
	ENSRNOP00055047700
	ENSRNOP00055047702
	ENSRNOP00055047703
	ENSRNOP00055047704
	ENSRNOP00060041532
	ENSRNOP00060041545
	ENSRNOP00060041549
	ENSRNOP00060041557
	ENSRNOP00065048228
	ENSRNOP00065048229
	ENSRNOP00065048230
	ENSRNOP00065048231
GenBank Protein	Q62981	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_059060 ⟸ NM_017364

- UniProtKB:

Q499Q6 (UniProtKB/Swiss-Prot), Q62981 (UniProtKB/Swiss-Prot), A6J9T5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLESLQPESELLHDEPDPGEKVYECDECRKTFSLEQHFVEHKKTHGGEKSPECTGCGEEFSKAS
SLTRHLRSRSRRESYKCGNCGRTFSQRGNFLSHQKQHAEERPSESKKTPVPMTTIVRNQRNAGN
KPYACKECGKAFNGKSYLKEHEKIHTGEKPFECNQCGRAFSQKQYLIKHQNVHSGKKPFKCNEC
GKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTCKECGKAFSGKS
NLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRI
HTGDKPYECKVCGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKPYQ
CSECGKAFSQKSHHIRHQRIHIH

hide sequence

RefSeq Acc Id:

ENSRNOP00000065656 ⟸ ENSRNOT00000074301

RefSeq Acc Id:

ENSRNOP00000047459 ⟸ ENSRNOT00000049877

RefSeq Acc Id:

ENSRNOP00000087535 ⟸ ENSRNOT00000113539

RefSeq Acc Id:

ENSRNOP00000088893 ⟸ ENSRNOT00000103714

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62981-F1-model_v2	AlphaFold	Q62981	1-407	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621205	AgrOrtholog
BioCyc Gene	G2FUF-60149	BioCyc
Ensembl Genes	ENSRNOG00000020762	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000046867	Ensembl
	ENSRNOG00055033434	UniProtKB/Swiss-Prot
	ENSRNOG00060028658	UniProtKB/Swiss-Prot
	ENSRNOG00065034097	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000049877	ENTREZGENE
	ENSRNOT00000049877.5	UniProtKB/Swiss-Prot
	ENSRNOT00000074301.3	UniProtKB/Swiss-Prot
	ENSRNOT00000103714.1	UniProtKB/Swiss-Prot
	ENSRNOT00000113539.1	UniProtKB/Swiss-Prot
	ENSRNOT00055057816	UniProtKB/Swiss-Prot
	ENSRNOT00055057818	UniProtKB/Swiss-Prot
	ENSRNOT00055057819	UniProtKB/Swiss-Prot
	ENSRNOT00055057820	UniProtKB/Swiss-Prot
	ENSRNOT00060049812	UniProtKB/Swiss-Prot
	ENSRNOT00060049827	UniProtKB/Swiss-Prot
	ENSRNOT00060049834	UniProtKB/Swiss-Prot
	ENSRNOT00060049841	UniProtKB/Swiss-Prot
	ENSRNOT00065058579	UniProtKB/Swiss-Prot
	ENSRNOT00065058580	UniProtKB/Swiss-Prot
	ENSRNOT00065058581	UniProtKB/Swiss-Prot
	ENSRNOT00065058582	UniProtKB/Swiss-Prot
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7937786	IMAGE-MGC_LOAD
InterPro	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:53982	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:124623	IMAGE-MGC_LOAD
NCBI Gene	53982	ENTREZGENE
PANTHER	GM08392P	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-C2H2_6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zfp260	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020762	RatGTEx
	ENSRNOG00000046867	RatGTEx
	ENSRNOG00055033434	RatGTEx
	ENSRNOG00060028658	RatGTEx
	ENSRNOG00065034097	RatGTEx
SMART	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	beta-beta-alpha zinc fingers	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6J9T5	ENTREZGENE, UniProtKB/TrEMBL
	Q499Q6	ENTREZGENE
	Q62981	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q499Q6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Zfp260	zinc finger protein 260	Znf146		Symbol updated	1299863	APPROVED
2002-08-07	Znf146				Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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