Sra1 (steroid receptor RNA activator 1) - Rat Genome Database

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Gene: Sra1 (steroid receptor RNA activator 1) Rattus norvegicus
Analyze
Symbol: Sra1
Name: steroid receptor RNA activator 1
RGD ID: 621148
Description: Enables transcription coactivator activity. Predicted to be involved in negative regulation of myoblast differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SRA1 (steroid receptor RNA activator 1); PARTICIPATES IN estrogen signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: SRAP; steroid receptor RNA activator protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,543,347 - 28,547,474 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,543,348 - 28,546,575 (-)EnsemblGRCr8
mRatBN7.21828,269,192 - 28,273,023 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,269,311 - 28,272,538 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,396,455 - 28,399,683 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,158,546 - 29,161,774 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,493,784 - 28,497,012 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,494,004 - 29,497,232 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,494,014 - 29,497,410 (-)Ensemblrn6Rnor6.0
Rnor_5.01829,199,078 - 29,202,306 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41829,306,555 - 29,309,783 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1827,996,484 - 27,999,712 (-)NCBICelera
RGSC_v3.11829,333,370 - 29,336,429 (-)NCBI
Cytogenetic Map18p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)
ribonucleoprotein complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Long noncoding RNA dysregulation in ischemic heart failure. Greco S, etal., J Transl Med. 2016 Jun 18;14(1):183. doi: 10.1186/s12967-016-0926-5.
3. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
4. A novel steroid receptor co-activator protein (SRAP) as an alternative form of steroid receptor RNA-activator gene: expression in prostate cancer cells and enhancement of androgen receptor activity. Kawashima H, etal., Biochem J 2003 Jan 1;369(Pt 1):163-71.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Existence of a regulatory loop between MCP-1 and TGF-beta in glomerular immune injury. Wolf G, etal., Am J Physiol Renal Physiol 2002 Nov;283(5):F1075-84.
Additional References at PubMed
PMID:8889548   PMID:10199399   PMID:12477932   PMID:12565891   PMID:14517287   PMID:15147866   PMID:15180993   PMID:15327771   PMID:15343387   PMID:16260607   PMID:16831833   PMID:18560548  
PMID:20855289   PMID:24486609   PMID:24486611   PMID:27086651   PMID:31714481  


Genomics

Comparative Map Data
Sra1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,543,347 - 28,547,474 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,543,348 - 28,546,575 (-)EnsemblGRCr8
mRatBN7.21828,269,192 - 28,273,023 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,269,311 - 28,272,538 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,396,455 - 28,399,683 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,158,546 - 29,161,774 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,493,784 - 28,497,012 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,494,004 - 29,497,232 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,494,014 - 29,497,410 (-)Ensemblrn6Rnor6.0
Rnor_5.01829,199,078 - 29,202,306 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41829,306,555 - 29,309,783 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1827,996,484 - 27,999,712 (-)NCBICelera
RGSC_v3.11829,333,370 - 29,336,429 (-)NCBI
Cytogenetic Map18p11NCBI
SRA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,550,067 - 140,558,093 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,537,340 - 140,557,677 (-)Ensemblhg38GRCh38
GRCh375139,929,652 - 139,937,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,909,837 - 139,917,862 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345139,910,273 - 139,917,220NCBI
Celera5136,006,404 - 136,014,428 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,074,991 - 135,083,015 (-)NCBIHuRef
CHM1_15139,362,900 - 139,370,926 (-)NCBICHM1_1
T2T-CHM13v2.05141,075,497 - 141,083,524 (-)NCBIT2T-CHM13v2.0
Sra1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,800,240 - 36,803,364 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,799,734 - 36,803,868 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381836,667,187 - 36,670,311 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,666,681 - 36,670,815 (-)Ensemblmm10GRCm38
MGSCv371836,826,841 - 36,829,965 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361836,793,221 - 36,796,269 (-)NCBIMGSCv36mm8
Celera1837,116,277 - 37,119,407 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Sra1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418126,726 - 133,316 (+)Ensembl
ChiLan1.0NW_004955418126,111 - 133,498 (+)NCBIChiLan1.0ChiLan1.0
SRA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,808,039 - 135,815,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,947,590 - 133,955,302 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,914,506 - 135,922,704 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,032,113 - 142,040,137 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,032,119 - 142,039,188 (-)EnsemblpanPan2panpan1.1
SRA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,745,518 - 35,752,497 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,745,877 - 35,752,502 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha232,783,751 - 32,790,730 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0236,200,151 - 36,207,129 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,200,510 - 36,207,134 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,253,022 - 33,260,000 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,120,557 - 34,127,539 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,873,253 - 34,880,232 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sra1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,086,253 - 152,092,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,519,087 - 9,525,123 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,518,719 - 9,525,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,307,012 - 142,313,738 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12142,307,009 - 142,314,613 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,250,853 - 148,257,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,194,462 - 43,203,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,194,693 - 43,202,057 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603434,681,266 - 34,689,988 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sra1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,315,236 - 33,321,795 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474333,314,878 - 33,322,297 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sra1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1157,715,494 - 7,719,604 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sra1
14 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:35
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000024671
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH142334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,269,463 - 28,269,659 (+)MAPPERmRatBN7.2
Rnor_6.01829,494,158 - 29,494,353NCBIRnor6.0
Rnor_5.01829,199,232 - 29,199,427UniSTSRnor5.0
RGSC_v3.41829,306,709 - 29,306,904UniSTSRGSC3.4
Celera1827,996,638 - 27,996,833UniSTS
RH 3.4 Map18414.2UniSTS
Cytogenetic Map18p11UniSTS
RH140769  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,269,526 - 28,269,718 (+)MAPPERmRatBN7.2
Rnor_6.01829,494,221 - 29,494,412NCBIRnor6.0
Rnor_5.01829,199,295 - 29,199,486UniSTSRnor5.0
RGSC_v3.41829,306,772 - 29,306,963UniSTSRGSC3.4
Celera1827,996,701 - 27,996,892UniSTS
RH 3.4 Map18393.0UniSTS
Cytogenetic Map18p11UniSTS
AA959952  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,269,426 - 28,269,672 (+)MAPPERmRatBN7.2
Rnor_6.01829,494,121 - 29,494,366NCBIRnor6.0
Rnor_5.01829,199,195 - 29,199,440UniSTSRnor5.0
RGSC_v3.41829,306,672 - 29,306,917UniSTSRGSC3.4
Celera1827,996,601 - 27,996,846UniSTS
Cytogenetic Map18p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024671   ⟹   ENSRNOP00000024671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,543,348 - 28,546,575 (-)Ensembl
mRatBN7.2 Ensembl1828,269,311 - 28,272,538 (-)Ensembl
Rnor_6.0 Ensembl1829,494,014 - 29,497,410 (-)Ensembl
RefSeq Acc Id: NM_183329   ⟹   NP_899158
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,543,347 - 28,546,575 (-)NCBI
mRatBN7.21828,269,310 - 28,272,538 (-)NCBI
Rnor_6.01829,494,004 - 29,497,232 (-)NCBI
Rnor_5.01829,199,078 - 29,202,306 (-)NCBI
RGSC_v3.41829,306,555 - 29,309,783 (-)RGD
Celera1827,996,484 - 27,999,712 (-)RGD
Sequence:
RefSeq Acc Id: XM_039096578   ⟹   XP_038952506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,543,347 - 28,547,474 (-)NCBI
mRatBN7.21828,269,192 - 28,273,023 (-)NCBI
RefSeq Acc Id: XR_010059546
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,543,647 - 28,547,474 (-)NCBI
RefSeq Acc Id: NP_899158   ⟸   NM_183329
- UniProtKB: Q811X7 (UniProtKB/Swiss-Prot),   Q6QGW5 (UniProtKB/Swiss-Prot),   G3V8C6 (UniProtKB/TrEMBL),   A6J320 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024671   ⟸   ENSRNOT00000024671
RefSeq Acc Id: XP_038952506   ⟸   XM_039096578
- Peptide Label: isoform X1
- UniProtKB: Q5BKE4 (UniProtKB/TrEMBL)
Protein Domains
SRA1/Sec31

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6QGW5-F1-model_v2 AlphaFold Q6QGW5 1-219 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621148 AgrOrtholog
BioCyc Gene G2FUF-7871 BioCyc
Ensembl Genes ENSRNOG00000018089 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000024671 ENTREZGENE
Gene3D-CATH Functional domain of the splicing factor Prp18 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7381969 IMAGE-MGC_LOAD
InterPro SRA1-protein/COPII_Sec31 UniProtKB/Swiss-Prot
  Steroid_recept_RNA_1 UniProtKB/Swiss-Prot
KEGG Report rno:252891 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108511 IMAGE-MGC_LOAD
NCBI Gene 252891 ENTREZGENE
PANTHER PTHR18834 UniProtKB/Swiss-Prot
  STEROID RECEPTOR RNA ACTIVATOR 1 UniProtKB/Swiss-Prot
Pfam SRA1 UniProtKB/Swiss-Prot
PhenoGen Sra1 PhenoGen
RatGTEx ENSRNOG00000018089 RatGTEx
UniProt A6J320 ENTREZGENE, UniProtKB/TrEMBL
  A6J321_RAT UniProtKB/TrEMBL
  G3V8C6 ENTREZGENE, UniProtKB/TrEMBL
  Q5BKE4 ENTREZGENE, UniProtKB/TrEMBL
  Q6QGW5 ENTREZGENE
  Q811X7 ENTREZGENE
  SRA1_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q811X7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Sra1  steroid receptor RNA activator 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Sra1  steroid receptor RNA activator 1      Symbol and Name status set to provisional 70820 PROVISIONAL