Tsga10 (testis specific 10) - Rat Genome Database

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Gene: Tsga10 (testis specific 10) Rattus norvegicus
Analyze
Symbol: Tsga10
Name: testis specific 10
RGD ID: 621142
Description: Enables structural molecule activity. Predicted to act upstream of or within cell projection assembly. Located in cytoplasm. Human ortholog(s) of this gene implicated in spermatogenic failure 26. Orthologous to human TSGA10 (testis specific 10); INTERACTS WITH ammonium chloride; bisphenol A; Butylbenzyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cp431; MGC116360; testis-specific gene 10 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,487,007 - 47,594,201 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl947,487,007 - 47,593,980 (-)EnsemblGRCr8
mRatBN7.2939,991,203 - 40,098,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,991,830 - 40,098,232 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx948,487,241 - 48,594,133 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,609,997 - 53,716,887 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,891,904 - 51,998,962 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,351,655 - 44,456,576 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,351,951 - 44,456,554 (-)Ensemblrn6Rnor6.0
Rnor_5.0944,050,725 - 44,154,714 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4936,713,297 - 36,811,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera937,745,749 - 37,852,493 (-)NCBICelera
RGSC_v3.1936,714,710 - 36,813,066 (-)NCBI
Cytogenetic Map9q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Tsga10 encodes a 65-kilodalton protein that is processed to the 27-kilodalton fibrous sheath protein. Modarressi MH, etal., Biol Reprod 2004 Mar;70(3):608-15. Epub 2003 Oct 29.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16643851  


Genomics

Comparative Map Data
Tsga10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,487,007 - 47,594,201 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl947,487,007 - 47,593,980 (-)EnsemblGRCr8
mRatBN7.2939,991,203 - 40,098,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,991,830 - 40,098,232 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx948,487,241 - 48,594,133 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,609,997 - 53,716,887 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,891,904 - 51,998,962 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,351,655 - 44,456,576 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,351,951 - 44,456,554 (-)Ensemblrn6Rnor6.0
Rnor_5.0944,050,725 - 44,154,714 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4936,713,297 - 36,811,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera937,745,749 - 37,852,493 (-)NCBICelera
RGSC_v3.1936,714,710 - 36,813,066 (-)NCBI
Cytogenetic Map9q21NCBI
TSGA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,997,261 - 99,154,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,995,156 - 99,154,964 (-)Ensemblhg38GRCh38
GRCh37299,613,724 - 99,771,429 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,980,781 - 99,124,469 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34299,072,872 - 99,216,553NCBI
Celera293,818,739 - 93,975,875 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,379,409 - 93,536,983 (-)NCBIHuRef
CHM1_1299,618,402 - 99,776,138 (-)NCBICHM1_1
T2T-CHM13v2.0299,455,791 - 99,613,837 (-)NCBIT2T-CHM13v2.0
Tsga10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,793,651 - 37,905,507 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,793,857 - 37,905,510 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38137,754,570 - 37,866,426 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,754,776 - 37,866,429 (-)Ensemblmm10GRCm38
MGSCv37137,811,621 - 37,921,924 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36137,699,322 - 37,809,625 (-)NCBIMGSCv36mm8
Celera137,536,271 - 37,645,900 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.88NCBI
Tsga10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,376,749 - 5,471,815 (-)Ensembl
ChiLan1.0NW_0049554705,376,749 - 5,471,904 (-)NCBIChiLan1.0ChiLan1.0
TSGA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,291,075 - 29,442,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,293,835 - 29,445,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,144,683 - 100,308,584 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,920,575 - 100,083,682 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,920,575 - 100,083,654 (-)EnsemblpanPan2panpan1.1
TSGA10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,556,248 - 43,685,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,556,346 - 43,725,260 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1043,479,781 - 43,652,756 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01044,428,420 - 44,563,676 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,428,510 - 44,597,625 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,138,446 - 44,271,894 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,422,006 - 44,594,703 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,606,433 - 44,741,615 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tsga10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,759,049 - 84,910,550 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367442,044,388 - 2,100,353 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSGA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,198,218 - 55,321,236 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1355,197,709 - 55,319,628 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,781,692 - 57,871,837 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSGA10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,714,017 - 2,865,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,713,812 - 2,864,734 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041170,306,269 - 170,458,056 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsga10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,022,631 - 4,108,141 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247494,023,629 - 4,142,496 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tsga10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14113,958,793 - 114,062,386 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tsga10
1200 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:6
Count of miRNA genes:5
Interacting mature miRNAs:6
Transcripts:ENSRNOT00000024845, ENSRNOT00000041498
Prediction methods:Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
D9Rat73  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2940,043,712 - 40,043,913 (+)MAPPERmRatBN7.2
Rnor_6.0944,402,053 - 44,402,253NCBIRnor6.0
Rnor_5.0944,100,481 - 44,100,681UniSTSRnor5.0
RGSC_v3.4936,756,576 - 36,756,777RGDRGSC3.4
RGSC_v3.4936,756,577 - 36,756,777UniSTSRGSC3.4
Celera937,798,103 - 37,798,303UniSTS
RGSC_v3.1936,757,933 - 36,758,456RGD
FHH x ACI Map926.86UniSTS
FHH x ACI Map926.86RGD
Cytogenetic Map9q21UniSTS
D9Got49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2940,080,166 - 40,080,362 (+)MAPPERmRatBN7.2
Rnor_6.0944,438,573 - 44,438,768NCBIRnor6.0
Rnor_5.0944,136,711 - 44,136,906UniSTSRnor5.0
RGSC_v3.4936,793,588 - 36,793,782RGDRGSC3.4
RGSC_v3.4936,793,589 - 36,793,784UniSTSRGSC3.4
Celera937,834,443 - 37,834,638UniSTS
RGSC_v3.1936,795,002 - 36,795,196RGD
RH 3.4 Map9371.8UniSTS
RH 3.4 Map9371.8RGD
RH 2.0 Map9379.8RGD
Cytogenetic Map9q21UniSTS
RH132864  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2940,055,996 - 40,056,182 (+)MAPPERmRatBN7.2
Rnor_6.0944,414,338 - 44,414,523NCBIRnor6.0
Rnor_5.0944,112,766 - 44,112,951UniSTSRnor5.0
RGSC_v3.4936,769,071 - 36,769,256UniSTSRGSC3.4
Celera937,810,393 - 37,810,578UniSTS
Cytogenetic Map9q21UniSTS
AU048041  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8947,509,197 - 47,509,452 (+)Marker Load Pipeline
mRatBN7.2940,013,393 - 40,013,646 (+)MAPPERmRatBN7.2
Rnor_6.0944,373,015 - 44,373,267NCBIRnor6.0
Rnor_5.0944,071,443 - 44,071,695UniSTSRnor5.0
RGSC_v3.4936,726,249 - 36,726,501UniSTSRGSC3.4
Celera937,767,784 - 37,768,036UniSTS
Cytogenetic Map9q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 355 192 11 144 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001393709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF092091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080011   ⟹   ENSRNOP00000071376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,996,776 - 40,098,232 (-)Ensembl
Rnor_6.0 Ensembl944,359,492 - 44,456,554 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083747   ⟹   ENSRNOP00000068609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl947,487,007 - 47,593,874 (-)Ensembl
mRatBN7.2 Ensembl939,991,830 - 40,098,044 (-)Ensembl
Rnor_6.0 Ensembl944,367,252 - 44,419,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091397   ⟹   ENSRNOP00000069242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl947,492,580 - 47,565,165 (-)Ensembl
mRatBN7.2 Ensembl939,996,776 - 40,098,232 (-)Ensembl
Rnor_6.0 Ensembl944,351,951 - 44,419,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094020   ⟹   ENSRNOP00000086447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl947,491,579 - 47,565,165 (-)Ensembl
mRatBN7.2 Ensembl939,996,127 - 40,098,232 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095645   ⟹   ENSRNOP00000086664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl947,491,579 - 47,565,165 (-)Ensembl
mRatBN7.2 Ensembl939,996,127 - 40,098,232 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116605   ⟹   ENSRNOP00000080876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl940,026,266 - 40,098,044 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116860   ⟹   ENSRNOP00000076987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl947,491,579 - 47,593,980 (-)Ensembl
mRatBN7.2 Ensembl939,996,127 - 40,098,044 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117770   ⟹   ENSRNOP00000081525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl947,491,579 - 47,565,165 (-)Ensembl
mRatBN7.2 Ensembl939,996,127 - 40,098,232 (-)Ensembl
RefSeq Acc Id: NM_001393709   ⟹   NP_001380638
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,487,007 - 47,594,061 (-)NCBI
mRatBN7.2939,991,203 - 40,098,259 (-)NCBI
RefSeq Acc Id: XM_063266670   ⟹   XP_063122740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,489,783 - 47,593,861 (-)NCBI
RefSeq Acc Id: XM_063266671   ⟹   XP_063122741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,487,619 - 47,593,861 (-)NCBI
RefSeq Acc Id: XM_063266672   ⟹   XP_063122742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,489,905 - 47,593,860 (-)NCBI
RefSeq Acc Id: XM_063266673   ⟹   XP_063122743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,487,619 - 47,593,860 (-)NCBI
RefSeq Acc Id: XM_063266674   ⟹   XP_063122744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,489,780 - 47,593,861 (-)NCBI
RefSeq Acc Id: XM_063266675   ⟹   XP_063122745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,487,619 - 47,593,860 (-)NCBI
RefSeq Acc Id: XM_063266676   ⟹   XP_063122746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,492,080 - 47,593,861 (-)NCBI
RefSeq Acc Id: XM_063266677   ⟹   XP_063122747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,489,783 - 47,594,201 (-)NCBI
RefSeq Acc Id: XM_063266678   ⟹   XP_063122748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,489,783 - 47,565,023 (-)NCBI
RefSeq Acc Id: XM_063266679   ⟹   XP_063122749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,487,619 - 47,594,201 (-)NCBI
RefSeq Acc Id: XM_063266680   ⟹   XP_063122750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,489,780 - 47,594,201 (-)NCBI
RefSeq Acc Id: XM_063266681   ⟹   XP_063122751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8947,487,619 - 47,594,201 (-)NCBI
Ensembl Acc Id: ENSRNOP00000071376   ⟸   ENSRNOT00000080011
Ensembl Acc Id: ENSRNOP00000069242   ⟸   ENSRNOT00000091397
Ensembl Acc Id: ENSRNOP00000068609   ⟸   ENSRNOT00000083747
Ensembl Acc Id: ENSRNOP00000076987   ⟸   ENSRNOT00000116860
Ensembl Acc Id: ENSRNOP00000081525   ⟸   ENSRNOT00000117770
Ensembl Acc Id: ENSRNOP00000080876   ⟸   ENSRNOT00000116605
Ensembl Acc Id: ENSRNOP00000086447   ⟸   ENSRNOT00000094020
Ensembl Acc Id: ENSRNOP00000086664   ⟸   ENSRNOT00000095645
RefSeq Acc Id: NP_001380638   ⟸   NM_001393709
- UniProtKB: B4F7B1 (UniProtKB/TrEMBL),   A0A8I6A5V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122751   ⟸   XM_063266681
- Peptide Label: isoform X11
- UniProtKB: A0A8I6A2Q7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122749   ⟸   XM_063266679
- Peptide Label: isoform X9
- UniProtKB: B4F7B1 (UniProtKB/TrEMBL),   A0A8I6A5V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122741   ⟸   XM_063266671
- Peptide Label: isoform X2
- UniProtKB: A0A8I5YC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122745   ⟸   XM_063266675
- Peptide Label: isoform X6
- UniProtKB: A0A8I5YC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122743   ⟸   XM_063266673
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JT84 (UniProtKB/TrEMBL),   A0A8I5YC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122750   ⟸   XM_063266680
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A2Q7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122744   ⟸   XM_063266674
- Peptide Label: isoform X5
- UniProtKB: A0A8I5YC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122747   ⟸   XM_063266677
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A5V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122740   ⟸   XM_063266670
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122748   ⟸   XM_063266678
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A5V1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122742   ⟸   XM_063266672
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YC11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122746   ⟸   XM_063266676
- Peptide Label: isoform X7
- UniProtKB: A0A8I5YC11 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z220-F1-model_v2 AlphaFold Q9Z220 1-712 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696616
Promoter ID:EPDNEW_R7140
Type:multiple initiation site
Name:Tsga10_1
Description:testis specific 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0944,456,598 - 44,456,658EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621142 AgrOrtholog
BioCyc Gene G2FUF-27779 BioCyc
Ensembl Genes ENSRNOG00000058681 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000083747 ENTREZGENE
  ENSRNOT00000091397 ENTREZGENE
  ENSRNOT00000095645 ENTREZGENE
  ENSRNOT00000116860 ENTREZGENE
InterPro Centriole_BasalBody_StrucProt UniProtKB/Swiss-Prot
NCBI Gene 252923 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN CEP135 UniProtKB/Swiss-Prot
  TESTIS SPECIFIC 10 UniProtKB/Swiss-Prot
PhenoGen Tsga10 PhenoGen
RatGTEx ENSRNOG00000058681 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot
UniProt A0A0G2JT84 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JUV2_RAT UniProtKB/TrEMBL
  A0A8I5YC11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSQ2_RAT UniProtKB/TrEMBL
  A0A8I6A2Q7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5V1 ENTREZGENE, UniProtKB/TrEMBL
  A6INH7_RAT UniProtKB/TrEMBL
  A6INH8_RAT UniProtKB/TrEMBL
  A6INH9_RAT UniProtKB/TrEMBL
  A6INI2_RAT UniProtKB/TrEMBL
  A6INI3_RAT UniProtKB/TrEMBL
  B4F7B1 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLI3_RAT UniProtKB/TrEMBL
  Q9Z220 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Tsga10  testis specific 10      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Tsga10  testis specific, 10      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_disease absence of the normally observed testis-specific expression of the human homolog is associated with infertility 1302308