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Gene: G3bp1 (G3BP stress granule assembly factor 1) Rattus norvegicus

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Symbol:

G3bp1

Name:

G3BP stress granule assembly factor 1

RGD ID:

621140

Description:

Predicted to enable several functions, including helicase activity; molecular condensate scaffold activity; and ribosomal small subunit binding activity. Predicted to be involved in defense response to virus; positive regulation of type I interferon production; and stress granule assembly. Predicted to act upstream of or within negative regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm. Predicted to be active in cytoplasmic stress granule and cytosol. Orthologous to human G3BP1 (G3BP stress granule assembly factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

G3bp; GTPase activating protein (SH3 domain) binding protein 1; ras GTPase-activating protein-binding protein 1; Ras-GTPase-activating protein SH3-domain binding protein; Ras-GTPase-activating protein SH3-domain binding protein 1; RGD1310666; similar to ras-GTPase-activating protein SH3-domain binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	G3BP1 (G3BP stress granule assembly factor 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	G3bp1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	G3bp1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	G3BP1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	G3BP1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	G3bp1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	G3BP1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	G3BP1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	G3bp1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	G3bp1 (G3BP stress granule assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PIGW (phosphatidylinositol glycan anchor biosynthesis class W)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	G3bp1 (G3BP stress granule assembly factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	G3BP1 (G3BP stress granule assembly factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	g3bp1 (GTPase activating protein (SH3 domain) binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	g3bp1 (GTPase activating protein (SH3 domain) binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BRE5	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	BRE5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	gtbp-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	gtbp-1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	g3bp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Candidate Gene For:

Bmd4

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	40,087,533 - 40,120,931 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	40,087,533 - 40,120,931 (+)	Ensembl				GRCr8
mRatBN7.2	10	39,586,864 - 39,620,268 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,586,864 - 39,620,268 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	44,270,665 - 44,304,038 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,760,770 - 43,794,148 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,264,441 - 39,297,820 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,812,858 - 40,846,252 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,812,858 - 40,846,252 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,644,334 - 40,678,457 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,880,198 - 40,913,723 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,918,605 - 38,949,887 (+)	NCBI		Celera
RGSC_v3.1	10	40,922,239 - 40,922,700 (+)	NCBI
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Disease Progression (ISO)

Hereditary Neoplastic Syndromes (ISO)

malignant astrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

2-deoxy-D-glucose (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzalkonium chloride (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclophosphamide (ISO)

D-glucose (ISO)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

diethylstilbestrol (ISO)

dorsomorphin (ISO)

ethanol (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furfural (ISO)

geldanamycin (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (ISO)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

lovastatin (ISO)

mercury dichloride (ISO)

methidathion (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

microcystin RR (ISO)

nitrates (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

phenol red (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

poly(I:C) (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium dichromate (ISO)

syringic acid (ISO)

temozolomide (ISO)

thapsigargin (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

uranium atom (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

warfarin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to virus (IEA,ISO)

immune system process (IEA)

innate immune response (IEA)

negative regulation of canonical Wnt signaling pathway (ISO)

positive regulation of type I interferon production (IEA,ISO)

stress granule assembly (IBA,IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytoplasmic stress granule (IBA,IEA,ISO)

cytosol (IBA,IEA,ISO)

nucleus (IEA)

perikaryon (IEA)

Molecular Function

ATP binding (IEA)

DNA binding (IEA)

DNA helicase activity (IBA,IEA,ISO)

DNA/RNA helicase activity (IBA,IEA,ISO)

endonuclease activity (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

molecular condensate scaffold activity (IEA,ISO)

mRNA binding (IBA,IEA,ISO)

nuclease activity (IEA)

nucleic acid binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

ribosomal small subunit binding (IEA,ISO)

RNA binding (IEA)

RNA helicase activity (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18625844	PMID:20180778	PMID:20392851	PMID:21423176	PMID:21652632	PMID:22658674	PMID:22681889	PMID:23163895	PMID:23279204	PMID:27430620	PMID:30135423	PMID:30404792
PMID:30510222	PMID:30804210	PMID:31505169	PMID:33065005	PMID:35352799	PMID:36450665	PMID:37442236

Genomics

Comparative Map Data

G3bp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	40,087,533 - 40,120,931 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	40,087,533 - 40,120,931 (+)	Ensembl				GRCr8
mRatBN7.2	10	39,586,864 - 39,620,268 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,586,864 - 39,620,268 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	44,270,665 - 44,304,038 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,760,770 - 43,794,148 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,264,441 - 39,297,820 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,812,858 - 40,846,252 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,812,858 - 40,846,252 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	40,644,334 - 40,678,457 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	40,880,198 - 40,913,723 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	38,918,605 - 38,949,887 (+)	NCBI		Celera
RGSC_v3.1	10	40,922,239 - 40,922,700 (+)	NCBI
Cytogenetic Map	10	q22	NCBI

G3BP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	151,771,954 - 151,812,785 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	151,770,951 - 151,812,911 (+)	Ensembl			hg38	GRCh38
GRCh37	5	151,151,515 - 151,192,346 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	151,131,669 - 151,165,108 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	147,232,867 - 147,266,308 (+)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	146,296,870 - 146,330,324 (+)	NCBI		HuRef
CHM1_1	5	150,583,918 - 150,617,337 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	152,310,934 - 152,351,769 (+)	NCBI		T2T-CHM13v2.0

G3bp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	55,360,521 - 55,391,722 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	55,360,511 - 55,395,664 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	55,469,657 - 55,500,888 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	55,469,685 - 55,504,838 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	55,283,254 - 55,314,389 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	55,313,175 - 55,344,310 (+)	NCBI		MGSCv36	mm8
Celera	11	60,271,641 - 60,286,911 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	33.09	NCBI

G3bp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	6,197,361 - 6,215,979 (+)	Ensembl
ChiLan1.0	NW_004955408	6,197,988 - 6,223,135 (+)	NCBI	ChiLan1.0	ChiLan1.0

G3BP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	147,000,002 - 147,033,451 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	145,139,497 - 145,172,996 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	147,195,100 - 147,234,576 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	153,197,988 - 153,237,329 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	153,197,813 - 153,230,414 (+)	Ensembl			panPan2	panpan1.1

G3BP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	57,541,627 - 57,585,375 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	57,481,908 - 57,585,241 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	57,361,381 - 57,405,136 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	57,984,264 - 58,028,046 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	57,962,892 - 58,027,993 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	57,800,420 - 57,844,163 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	57,898,867 - 57,942,698 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	58,402,150 - 58,445,909 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

G3bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	112,467,088 - 112,499,763 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	10,916,442 - 10,949,085 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	10,916,442 - 10,949,080 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

G3BP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	71,236,339 - 71,276,078 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	71,236,025 - 71,276,111 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	77,426,673 - 77,442,846 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

G3BP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	54,335,996 - 54,369,956 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	54,336,113 - 54,368,674 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	23,329,228 - 23,368,946 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

G3bp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	37,253,054 - 37,274,067 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	37,246,989 - 37,279,818 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

G3bp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	37,885,529 - 37,915,960 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in G3bp1
246 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	689
Count of miRNA genes:	294
Interacting mature miRNAs:	386
Transcripts:	ENSRNOT00000018149
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35893263	52293000	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH137330

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,620,077 - 39,620,257 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,846,062 - 40,846,241	NCBI	Rnor6.0
Rnor_5.0	10	40,678,267 - 40,678,446	UniSTS	Rnor5.0
RGSC_v3.4	10	40,913,533 - 40,913,712	UniSTS	RGSC3.4
Celera	10	38,949,697 - 38,949,876	UniSTS
RH 3.4 Map	10	413.4	UniSTS
Cytogenetic Map	10	q22	UniSTS

BI280765

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,592,947 - 39,593,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,818,942 - 40,819,137	NCBI	Rnor6.0
Rnor_5.0	10	40,650,477 - 40,650,672	UniSTS	Rnor5.0
RGSC_v3.4	10	40,886,282 - 40,886,477	UniSTS	RGSC3.4
Celera	10	38,924,689 - 38,924,884	UniSTS
RH 3.4 Map	10	414.6	UniSTS
Cytogenetic Map	10	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
20	12	67	166	91	90	59	94	59	6	378	194	11	145	97	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_133565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_340802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB032425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018149 ⟹ ENSRNOP00000018149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	40,087,533 - 40,120,931 (+)	Ensembl
mRatBN7.2 Ensembl	10	39,586,864 - 39,620,268 (+)	Ensembl
Rnor_6.0 Ensembl	10	40,812,858 - 40,846,252 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106452 ⟹ ENSRNOP00000089349

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	39,586,870 - 39,616,399 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110533 ⟹ ENSRNOP00000087131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	40,087,713 - 40,115,869 (+)	Ensembl
mRatBN7.2 Ensembl	10	39,586,870 - 39,615,862 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136349 ⟹ ENSRNOP00000107934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	40,102,165 - 40,120,931 (+)	Ensembl

RefSeq Acc Id:

NM_133565 ⟹ NP_598249

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	40,087,533 - 40,120,931 (+)	NCBI
mRatBN7.2	10	39,586,864 - 39,620,268 (+)	NCBI
Rnor_6.0	10	40,812,858 - 40,846,252 (+)	NCBI
Rnor_5.0	10	40,644,334 - 40,678,457 (+)	NCBI
RGSC_v3.4	10	40,880,198 - 40,913,723 (+)	RGD
Celera	10	38,918,605 - 38,949,887 (+)	RGD

Sequence:

show sequence

CGCGGCATCGCGCGAGGGACGCCGCCACCTCCTCCCACGCAGCAGCCCTGTCCTCCCGCTCAGC
CGCACAGGTTGAATCCACCAAAGCGATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGG
GAGTTTGTGCGACAGTACTACACCCTGCTGAACCAGGCCCCGGACATGCTGCACAGATTTTATG
GCAAGAACTCTTCCTATGCCCACGGGGGCTTGGATTCCAACGGGAAGCCAGCAGATGCAGTCTA
CGGGCAGAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAAGATC
CGCCACGTGGATGCTCACGCAACTCTGAATGACGGGGTGGTGGTCCAAGTGATGGGGCTGCTGT
CCAACAACAACCAGGCTCTGCGGAGGTTCATGCAGACCTTTGTCCTTGCGCCTGAGGGCTCTGT
TGCCAACAAATTCTATGTTCACAATGACATCTTCAGATACCAAGATGAGGTCTTCGGTGGCTTT
GTCACAGAGCCTCAAGAGGAATCTGAGGAAGAAGTAGAGGAACCTGAAGAAAGACAGCAGTCAC
CAGAGGTGGTTGCTGATGACTCTGGAACTTTCTATGATCAGACTGTTAGCAATGACTTGGAGGA
ACATTTAGAGGAGCCTGTTGTGGAACCAGAACCAGAGCCGGAGCCAGAGCCGGAACCGGAACCT
GTGTCCGACATTCAAGAGGACAAGCCTGAGCCTGCATTGGAAGAAGCCGCTCCTGAGGATGTGC
AGAAGAGCGCCTCCCCGGCCCCGGCAGACGTGGCCCCAGCACAGGAGGACTTGAGGACATTTTC
TTGGGCGTCTGTGACTAGTAAGAACCTTCCTCCCAGTGGGGCTGTTCCAGTGACAGGGACACCA
CCTCATGTGGTCAAAGTGCCAGCATCACAGCCCCGTCCAGAATCTAAGCCTGACTCTCAGATCC
CACCACAAAGGCCTCAGAGAGATCAGAGAGCTCGAGAGCAGCGGATCAATATCCCTCCTCAGAG
AGGACCCCGGCCAATTCGTGAGGCTGGTGAACCAGGAGATGTGGAACCCCGAAGGATGGTGAGG
CACCCTGACAGTCACCAGCTCTTCATTGGGAACCTGCCACATGAGGTTGACAAGTCGGAACTGA
AGGATTTTTTCCAAAGTTATGGGAATGTTGTGGAGCTGCGCATCAACAGTGGTGGGAAGTTACC
CAACTTCGGTTTCGTTGTGTTTGATGACTCGGAACCAGTTCAGAAGGTCCTTAATAACAGGCCC
ATCATGTTCCGAGGTGCGGTTCGCCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCCAGGGAAG
GCGACCGCAGGGATAACCGCCTTCGGGGACCTGGAGGCCCCCGTGGTGGGCCGAGTGGTGGGAT
GAGAGGCCCTCCCCGTGGAGGCATGGTGCAGAAACCAGGCTTTGGCGTGGGCAGGGGGATTACA
ACTCCAAGGCAGTGAATTGCTTGGCTCAGATCTCCACACAGCACACAGCCCCGGCTCCTGCAGA
ATGGTGAATTCCTTCAACCAGCCTTTGGTGTCTTGGAGTAGTCTATTATAAACTGCTTGAGTTT
GTACAATTTTAATTTCGCTTGTGTTCATGGTGTGTGCTCCCCAAACCCCTTTCCTCCCTTGACC
TTTTAGTCCTTCATTCCCAGTTTTCCGGAATGATACTTTAGGAGGAATAGATTTGTAAAGACGA
AGAGGAAAGACTGACCTTCCTGCTCACGCTGCATACACAGACTGGAGTCTCACGGCCATTCCCC
AGAAGTGTCTCGGTTTCACTGACCACGGATGTTTCATTTGTTGGGAGACACAGGATTTGATAAA
CATTTTGGAAGCGGGAAAAATCAAGTCACAACTCCTTTCTGGTGTGGAAAAATTGCCTTTTGGC
AACTGCCACTGGGTCCCTGCAGGTGTGGCTAACTGAATAAAAGGTGTTCTTTTGACATGTGATT
ACCAAACAATTCTAAACCTCCATTTTTACCATTGGATTTTTAAATTGTGATGTAGCCTGTCAAT
GTCTAGAACACAGCTAAAGACTTTTGTTGAACTGTTAGATTTTTTTGAGGTAGAGTTTTTCATG
TTTTATTTGTATTTGTAAAAAAAAAAAAAGAAAAAAAAAGAAAAAAGAAAAAAGGACAAAAAAT
TCCCACGAGAAAACAAACCCCAAATCTGATGACAAAACCAAGCAACACTGTGCCTTCTATTTAT
CGTTGACTCCGGCCCTGGCAACTGTTTAAAGGAAAGTAATAAAGATTCCAGAGTTGTTTTCAGA
TTCAGAGTATGTGGGGGAACTGCACAAGTTTTTTGATCACGTGTATGTGTCGTGTTAACATTGT
TCTGCCTTATCCTAAATCACGCCTCAGACTGGGATGCTTTTGAGGAAAGGTGCTTCTGTGAGGC
CTCTGACCTCAGTGGCTCTGTGCGCCACACTCTACTCTGCTGTCTGTCTGGGTTCCTGGTGGGC
CATAAGAAGGATTTGGTTGAATATTGGACTTGGCTAATGTGCTCCAGGGTCTGCATTTTTTTTC
TTTAAATCATAGCCATATGGTAAATTTTCTATTTTGTTACGGTTCTCTTTTACTGATGGACATG
CAGTGGGTGTTTCTTGGAAAAAGGCCAATTTTTATTAAAATATTTCTGGAAGAAAACTTCATCT
GGCAATGTAGACTGCTAAAACTCACTTTCCAGTGTTGTGTGTTGAGTGCTGTGTGTGACATTGG
GTGAAGGTTTTGTCCGCACAAGCCTCCATGGACAAGTCATTAGTCTGAAGGCAACCAGAGTGTC
TAACTTTTCCTAATGTTTGTGTGTATGTCTATGTATATGTGTATGTCTATGTATGTGTGTATGT
ATATGTATGTGGGAGTCTTCATACATGCGTGCACCACAGTATGCTTGTGGAAGTCAGGGCAACT
TGGGATCTAGGCCTTATACTCCACTGTTTGAAATTGGCCCATGAGCCACAAGCTTCTATGGGCT
CCTGTTTGTGCCTCTCATCTTGCTGTAAGGGCACAAGGATTTCAGACATGTGCTGCCATGCCTG
TCTTCCCTGTGGCTTCTGGGAATTAGTCAGGTCTTCATACTTACACATAGTGCTCAGCCAGCTC
GTCTGACTTTAGAGCTGTCACATATGTATGCTGGTTTTGTTAGGGTAGTTGGGATGAAAATGGT
GTGAGGTTGTCAGGTTTGGTCTCAATACCTCACAGATCTAAATGTTGACAGCATGTTGTGAACT
GAGGTAACCAAATCCCACGACTGGGGGTTCAGTTTAAGCACTTCATTTGAGGTGGTGACGATGC
AGATGTGTGCAGCATGTACTTTGTAGTAAAGTGTATGGTTACAAGGACAACTGAGCCAGGCTTG
GTGACTCATGATGATAACCCCAGCACTCAGGAGGCAAAAGCATGGTCTGTGAAGCAAGTTCCAC
CAAGGTTGCATAGTGTGACTTTCAAGAAACAAGGCAAAAGGGCAGCAAAGAAAAGTCCCAAGTG
GCACACAATGGCACAGGCTTGCCTGTGTAGTCTCAGATCTCCGGTTCAAGGCTAGTCTGGCCCA
TATAATAGTCTCTTAAAAGTTTCAGTAACTTGGGTAAATCTAAAAATGATTTTCACAATTGAGT
ACTAAGACATGCATTTAGAAGTTTTTTCCTAGTCACCTGATTAGGTGATTGACATTTGCTGTAC
AGAGTAAGGTGTCATGGCAGCATCCCTCATTTCTCTGGAGACCAAGGGTATCAGAGTGATCTGG
ATTGATCTGAGAAAGAGCAACCTGTGGGTGGGTTGGGATATGAGAAGCCCATTCTCTTCTACCT
CAGATAAGTGTGTAGCAGTACAACCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGGTGTGTAGGGATGTAGCAGTACCCCTATTGCTTGTGACTGGGGTTGGGGAACTGCTTCAGCC
CTACCCTATTTCCCAGCAGTGGCACTGGGGATCAGAGTGTGCTTTGGAAGGGCATGGGTCTCAG
CTTGGCAGCCCGTTTTGCACTGGAGAATCTGGATGCCAATGACACCACGTGAAGCCTAAACCTT
GGAGCTTAAGAGGTGCTCATGGTTACAGAAAGCACAGGCTATTTCAGAAGTGGCTGCTGATGTC
AGCCTTCTCATGTCAAGATTTGATCTGCAGGGAAGACTCAGGATGTCGTTCTTTGTTATTGAGC
TTAACTAGGATCCGTGATGGGTATTTTAGCCAAGTGAGACTTTATGTATGTGTACATGTCTATG
TGGATGTTGGCCACATGTGCAGGTGCCTCAGAACACCTATGGCCCCTTGGAGCTGGAGTTACAG
GTGAGTGAGCCCTCCCACATAGGAGCTGGGAATCGAACTTAAAGTCCTGGAAGAGCAGCAGGGT
ACTCTTAGGCATGAGTCTCTGTTCAGACCTATTGGAAGTAAGTAACCAGACCTTGACCAGACCT
TTCATTTGCTTTCCTTGTGAGGTGGCACTCCTGTGCTCTGCAGTCTCAGCTGCTGCTTTGGAAC
AGGGACAGTGACAGTTGGAGAGTTGCAATCAGGGCCTGTGGCACACGCTTAATCCTGGTGCTCA
GGAGACTGAGGTGAGGATTGTGAATTCAAAACCAGCCTTGATTACAAAGCAAAGCCCACTTTTG
TTTACAGCAAAACAAGTGAGCCCACTTAGCTTTCATGTGTGCCTTGGATTATGGCACAGTAATA
AAGGGAAGAGATGGTGGGAAGCAGTTGAGCGAACAGGGCTTTCAGGAGCAGGCGGGGCTTCGGG
CAGTACCTACAGTATTGAGCCAGGAGCCCGGTTCCTGTGAGTGCCTGTGAGCTGGATGTCTAGG
GTGGAATTTCCACCTCTCAGACCACTTGGGGTGCCATTCAGGACACAGTAGCGCCCTGCAAAGT
TAGCTCACCAGTTGCCCTCTACATAGCTGCTCCCTGCCCACCTTTAGGGATGGATTTACTGTGT
CAACAAGCTGGGTCTTGTGAGGTGTGAGGAAGGGAACAGGTGGTTCTGTGTGTGTCTGTGTGTG
GAAGCCTTGGGCGTTCCACAGGAGCCGTCCACCATGTTTTTGCTTGTTTTTGTTTTTTTGTGAC
GTTTCATTGTGTATTCATTTCTAGCTGTTCTGGAACTTGCTACATAGCTTAGCCTCCTATTAAC
TCAGAAATTTGCCTTCCTCTCTGCCTGCCAAAAGTTGGTATTTAAGGTGTGCACCAACACACCA
GGCTCTACCTTGTCTTTTTAAAATAAGGCTTCTCACCTGTTACCCTGATTAAGCTGTGATTAAG
TCAGTGAACTCCAGGGACCCACCCGTCTACCTACATGGTGACACCATGTGTGTTCTACAGACTG
AATTCAGGTCCTCACTTTACAGAACAAACAATTTCTCCAGAGACAGTGTCTCTGTGTATCCTGG
AATGCACGCTGTAGACAAGGCTGCCCTCAAACTCAGAGGTCCACCTGTCTGCCTAGTGGGATTA
AAGGCCTGCATCAACACCGCTTGGCTGCTAATGTGATGCTTTAATACCTAAAACGTGGCTGCCA
CTTTCTCTGAGGTCCTTTAGCATTCTGTGTTCTGAACCTCGGTGTTTTTGCCCCAGGGGCAGCG
TTTTGGGTGGAAATACACCCAGCTGTCAGGACGTGTATGTGTCATGTGCGGATTAAGAACCCAC
TGTTTCTTTCCATTTGACTCGCACTTGTGTGATGAGTCCCCATGACACTCCTGGGTATGCTGAG
ACCTTAGCGTCATGTGACTTCTCCCTGCACGTGTGCCTGTGTGCTCCAGCCCCACCTCTGTCTC
ACGCTGGTTTTTGTCTAGACCTGCACTGTTGAGCACTGTAAGTGAACAGATTGATCCCCCTTCA
TTTTGTTTGTCCCTTTATGGTTCTGTCCCATCCATTGTCATAAGCAGGGTCTTCCTAGAGGACT
CTGCCCCTCTTATGGTTCAGCCTGGAGTTGGAATTACCACTGGGTTAGGTTGTGGCTTCTTAAG
GAATTGAGACCTGACACTTTGAAGTCCCCATGATGGTTGAGTCAGTGACTGGGGGTAGCCTTCC
ATCAATTTCAGATCGGAAATTTCAGTATAGGAAATTGTTGGGAGGCTGGGGGTTGGGAGGTGGG
GCATGTGTGAGGAGGAAGTCCCCGGTCTCAGACTTACTTCCTGCTTGTTCCTAGTCCCTGCAGA
ACAACTGATTTGTTGTAAGCTCAGAACTCAAGCTCCACCCTGCTAGAGGAGAGTGGTCAGTTTC
CTTCCTTCCTCCCTGCACCCAAGGTTCAGTTAAATCCCATCATGCTACCTCAGCAGACTCCCCA
GGTCACTCCTCCCACCTCCAGGATCTTGCTGGTCTTTGCATCATCTTTAGATGAGTCTTTCTGA
AACAACCTTGGCCTTGTATCCCCCACACGTGTGTTTTCTCTCACCAGTCCCATAGACTGTAAGC
CCCTGTGGCAGGGTCTATGAGTGAGTCGCCTGTGTTAACCTTCAGTGGTACCTACCAATAAATA
TTCTTGGCTGAATAAATGAAA

hide sequence

RefSeq Acc Id:

XM_039085121 ⟹ XP_038941049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	40,087,600 - 40,116,690 (+)	NCBI
mRatBN7.2	10	39,587,255 - 39,620,259 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_598249	(Get FASTA)	NCBI Sequence Viewer
	XP_038941049	(Get FASTA)	NCBI Sequence Viewer
	XP_340803	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA84530	(Get FASTA)	NCBI Sequence Viewer
	EDM04485	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018149
	ENSRNOP00000018149.4
	ENSRNOP00000087131
	ENSRNOP00000087131.1
	ENSRNOP00000107934.1

RefSeq Acc Id:

NP_598249 ⟸ NM_133565

- UniProtKB:

D3ZYS7 (UniProtKB/TrEMBL), A0A8I6A7W1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRK
VMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHN
DIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQSPEVVADDSGTFYDQTVSNDLEEHLEEPVVE
PEPEPEPEPEPEPVSDIQEDKPEPALEEAAPEDVQKSASPAPADVAPAQEDLRTFSWASVTSKN
LPPSGAVPVTGTPPHVVKVPASQPRPESKPDSQIPPQRPQRDQRAREQRINIPPQRGPRPIREA
GEPGDVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFD
DSEPVQKVLNNRPIMFRGAVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGPSGGMRGPPRGGM
VQKPGFGVGRGITTPRQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000018149 ⟸ ENSRNOT00000018149

RefSeq Acc Id:	XP_038941049 ⟸ XM_039085121
- Peptide Label:	isoform X1
- UniProtKB:	D3ZYS7 (UniProtKB/TrEMBL), A0A8I6A7W1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089349 ⟸ ENSRNOT00000106452

Ensembl Acc Id:

ENSRNOP00000087131 ⟸ ENSRNOT00000110533

Ensembl Acc Id:

ENSRNOP00000107934 ⟸ ENSRNOT00000136349

Protein Domains

NTF2 RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYS7-F1-model_v2	AlphaFold	D3ZYS7	1-465	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697204

Promoter ID:

EPDNEW_R7728

Type:

multiple initiation site

Name:

G3bp1_1

Description:

G3BP stress granule assembly factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	40,812,861 - 40,812,921	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621140	AgrOrtholog
BioCyc Gene	G2FUF-25077	BioCyc
Ensembl Genes	ENSRNOG00000013186	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018149	ENTREZGENE
	ENSRNOT00000018149.8	UniProtKB/TrEMBL
	ENSRNOT00000110533	ENTREZGENE
	ENSRNOT00000110533.2	UniProtKB/TrEMBL
	ENSRNOT00000136349.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.450.50	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
InterPro	G3BP1_RRM	UniProtKB/TrEMBL
	NTF2	UniProtKB/TrEMBL
	NTF2-like_dom	UniProtKB/TrEMBL
	Nuclear_transport_factor_2_euk	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	Ras_GTPase_bind_prot	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	rno:171092	UniProtKB/TrEMBL
NCBI Gene	171092	ENTREZGENE
PANTHER	PTHR10693	UniProtKB/TrEMBL
	PTHR10693:SF21	UniProtKB/TrEMBL
Pfam	NTF2	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PhenoGen	G3bp1	PhenoGen
PROSITE	NTF2_DOMAIN	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013186	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54427	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I6A7W1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LRQ3_RAT	UniProtKB/TrEMBL
	D3ZYS7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-08	G3bp1	G3BP stress granule assembly factor 1	G3bp1	GTPase activating protein (SH3 domain) binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-17	G3bp1	GTPase activating protein (SH3 domain) binding protein 1	RGD1310666	similar to ras-GTPase-activating protein SH3-domain binding protein	Data merged from RGD:1310666	737654	PROVISIONAL
2008-09-25	G3bp1	GTPase activating protein (SH3 domain) binding protein 1	G3bp1	Ras-GTPase-activating protein SH3-domain binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310666	similar to ras-GTPase-activating protein SH3-domain binding protein	RGD1310666_predicted	similar to ras-GTPase-activating protein SH3-domain binding protein (predicted)	'predicted' is removed	2292626	APPROVED
2008-02-19	G3bp1	Ras-GTPase-activating protein SH3-domain binding protein 1	G3bp	Ras-GTPase-activating protein SH3-domain binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	G3bp	Ras-GTPase-activating protein SH3-domain binding protein			Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1310666_predicted	similar to ras-GTPase-activating protein SH3-domain binding protein (predicted)	LOC360530_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360530_predicted	similar to ras-GTPase-activating protein SH3-domain binding protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL
2002-08-07	G3bp	Ras-GTPase-activating protein SH3-domain binding protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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