Pdcl (phosducin like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pdcl (phosducin like) Rattus norvegicus
Analyze
Symbol: Pdcl
Name: phosducin like
RGD ID: 621135
Description: Involved in negative regulation of protein refolding and protein folding. Predicted to be located in cilium. Predicted to be active in cytoplasm. Orthologous to human PDCL (phosducin like); INTERACTS WITH 3H-1,2-dithiole-3-thione; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Pdcl1; Phlp; phosducin-like; phosducin-like 1; phosducin-like protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Pdcl1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,519,953 - 41,529,545 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl341,519,954 - 41,527,794 (-)EnsemblGRCr8
GRCr8 Ensembl341,264,326 - 41,270,411 (-)EnsemblGRCr8
mRatBN7.2321,110,165 - 21,119,763 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,872,698 - 20,881,301 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl321,110,167 - 21,119,715 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx324,578,973 - 24,587,995 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,163,935 - 33,172,957 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,974,724 - 30,983,752 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0321,602,349 - 21,609,821 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl321,601,816 - 21,609,853 (-)Ensemblrn6Rnor6.0
Rnor_5.0326,841,569 - 26,849,041 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4317,107,429 - 17,116,454 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera319,546,249 - 19,555,274 (-)NCBICelera
RGSC_v3.1317,003,800 - 17,012,826 (-)NCBI
Cytogenetic Map3q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IEA)
cytoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Regulatory interaction of phosducin-like protein with the cytosolic chaperonin complex. McLaughlin JN, etal., Proc Natl Acad Sci U S A 2002 Jun 11;99(12):7962-7.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Phosducin-like protein: an ethanol-responsive potential modulator of guanine nucleotide-binding protein function. Miles MF, etal., Proc Natl Acad Sci U S A 1993 Nov 15;90(22):10831-5.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Cloning and characterization of the rat and human phosducin-like protein genes: structure, expression and chromosomal localization. Thibault C, etal., Biochim Biophys Acta 1999 Mar 19;1444(3):346-54.
Additional References at PubMed
PMID:9139665   PMID:9551090   PMID:12477932   PMID:23637185   PMID:29290584  


Genomics

Comparative Map Data
Pdcl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,519,953 - 41,529,545 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl341,519,954 - 41,527,794 (-)EnsemblGRCr8
GRCr8 Ensembl341,264,326 - 41,270,411 (-)EnsemblGRCr8
mRatBN7.2321,110,165 - 21,119,763 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,872,698 - 20,881,301 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl321,110,167 - 21,119,715 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx324,578,973 - 24,587,995 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,163,935 - 33,172,957 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,974,724 - 30,983,752 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0321,602,349 - 21,609,821 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl321,601,816 - 21,609,853 (-)Ensemblrn6Rnor6.0
Rnor_5.0326,841,569 - 26,849,041 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4317,107,429 - 17,116,454 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera319,546,249 - 19,555,274 (-)NCBICelera
RGSC_v3.1317,003,800 - 17,012,826 (-)NCBI
Cytogenetic Map3q11NCBI
PDCL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,818,097 - 122,828,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,798,389 - 122,828,604 (-)Ensemblhg38GRCh38
GRCh379125,580,376 - 125,590,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,620,444 - 124,630,661 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349122,659,343 - 122,670,464NCBI
Celera996,228,719 - 96,239,278 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef995,194,963 - 95,205,522 (-)NCBIHuRef
CHM1_19125,728,203 - 125,738,762 (-)NCBICHM1_1
T2T-CHM13v2.09135,015,449 - 135,025,940 (-)NCBIT2T-CHM13v2.0
Pdcl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,240,086 - 37,249,832 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,240,086 - 37,249,344 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38237,350,074 - 37,359,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,350,074 - 37,359,332 (-)Ensemblmm10GRCm38
MGSCv37237,205,594 - 37,214,852 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36237,172,083 - 37,181,241 (-)NCBIMGSCv36mm8
Celera237,034,073 - 37,043,333 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Pdcl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554195,121,535 - 5,134,087 (+)Ensembl
ChiLan1.0NW_0049554195,123,490 - 5,132,092 (+)NCBIChiLan1.0ChiLan1.0
PDCL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,516,967 - 16,527,906 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,519,929 - 16,530,246 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,949,613 - 93,959,913 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19122,283,877 - 122,294,174 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9122,283,877 - 122,294,174 (-)EnsemblpanPan2panpan1.1
PDCL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1959,945,988 - 59,955,295 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl959,947,559 - 59,954,040 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha959,141,008 - 59,151,402 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0960,865,030 - 60,875,272 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl960,865,050 - 60,875,466 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1959,623,931 - 59,634,368 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0959,939,017 - 59,949,339 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0960,032,008 - 60,042,696 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pdcl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947191,538,715 - 191,555,000 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648711,306,778 - 11,323,571 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648711,309,073 - 11,323,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDCL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1263,747,703 - 263,759,543 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11263,747,900 - 263,759,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21297,212,592 - 297,222,610 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDCL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11215,300,100 - 15,309,079 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1215,299,749 - 15,310,729 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666079755,225 - 763,976 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdcl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476012,088,762 - 12,095,067 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476012,088,965 - 12,096,994 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdcl
48 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:443
Count of miRNA genes:231
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000012160
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012160   ⟹   ENSRNOP00000012160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,519,958 - 41,527,794 (-)Ensembl
mRatBN7.2 Ensembl321,110,167 - 21,119,715 (-)Ensembl
Rnor_6.0 Ensembl321,601,816 - 21,609,853 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167370   ⟹   ENSRNOP00000110135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,519,954 - 41,527,478 (-)Ensembl
RefSeq Acc Id: NM_022247   ⟹   NP_071583
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,520,481 - 41,529,506 (-)NCBI
mRatBN7.2321,110,693 - 21,119,718 (-)NCBI
Rnor_6.0321,602,349 - 21,609,821 (-)NCBI
Rnor_5.0326,841,569 - 26,849,041 (-)NCBI
RGSC_v3.4317,107,429 - 17,116,454 (-)RGD
Celera319,546,249 - 19,555,274 (-)RGD
Sequence:
RefSeq Acc Id: XM_039105777   ⟹   XP_038961705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,519,953 - 41,529,545 (-)NCBI
mRatBN7.2321,110,165 - 21,119,763 (-)NCBI
RefSeq Acc Id: XM_063284496   ⟹   XP_063140566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,519,953 - 41,529,319 (-)NCBI
RefSeq Acc Id: NP_071583   ⟸   NM_022247
- UniProtKB: Q4V8L9 (UniProtKB/Swiss-Prot),   Q63738 (UniProtKB/Swiss-Prot),   Q63737 (UniProtKB/Swiss-Prot),   A6JES8 (UniProtKB/TrEMBL),   A0A8I6A6H0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012160   ⟸   ENSRNOT00000012160
RefSeq Acc Id: XP_038961705   ⟸   XM_039105777
- Peptide Label: isoform X2
- UniProtKB: A6JES9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140566   ⟸   XM_063284496
- Peptide Label: isoform X1
- UniProtKB: Q63738 (UniProtKB/Swiss-Prot),   Q63737 (UniProtKB/Swiss-Prot),   Q4V8L9 (UniProtKB/Swiss-Prot),   A6JES8 (UniProtKB/TrEMBL),   A0A8I6A6H0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110135   ⟸   ENSRNOT00000167370
Protein Domains
Phosducin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63737-F1-model_v2 AlphaFold Q63737 1-301 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692045
Promoter ID:EPDNEW_R2570
Type:initiation region
Name:Pdcl_1
Description:phosducin-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0321,609,779 - 21,609,839EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621135 AgrOrtholog
BioCyc Gene G2FUF-49943 BioCyc
Ensembl Genes ENSRNOG00000008484 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000059243 Ensembl
Ensembl Transcript ENSRNOT00000012160 ENTREZGENE
  ENSRNOT00000012160.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.168.10 UniProtKB/Swiss-Prot
  Glutaredoxin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7453703 IMAGE-MGC_LOAD
InterPro Phosducin UniProtKB/Swiss-Prot
  Phosducin-like_reg UniProtKB/Swiss-Prot
  Phosducin_N_dom_sf UniProtKB/Swiss-Prot
  Phosducin_thioredoxin-like_dom UniProtKB/Swiss-Prot
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:64013 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114325 IMAGE-MGC_LOAD
NCBI Gene 64013 ENTREZGENE
PANTHER PHOSDUCIN-LIKE PROTEIN UniProtKB/Swiss-Prot
  PHOSDUCIN-LIKE PROTEIN UniProtKB/Swiss-Prot
Pfam Phosducin UniProtKB/Swiss-Prot
PhenoGen Pdcl PhenoGen
PRINTS PHOSDUCIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008484 RatGTEx
  ENSRNOG00000059243 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
UniProt A0A8I6A6H0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LV89_RAT UniProtKB/TrEMBL
  A6JES8 ENTREZGENE, UniProtKB/TrEMBL
  A6JES9 ENTREZGENE, UniProtKB/TrEMBL
  PHLP_RAT UniProtKB/Swiss-Prot
  Q4V8L9 ENTREZGENE
  Q63737 ENTREZGENE
  Q63738 ENTREZGENE
UniProt Secondary Q4V8L9 UniProtKB/Swiss-Prot
  Q63738 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-05 Pdcl  phosducin like  Pdcl1  phosducin-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-05-05 Pdcl1  phosducin-like 1  Pdcl  phosducin-like  Name and Symbol changed 629549 APPROVED
2004-09-10 Pdcl  phosducin-like    phosducin-like protein  Name updated 1299863 APPROVED
2002-08-07 Pdcl  phosducin-like protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction binds to G beta-gamma subunit complex, 26S proteasomal subunit, SUG1, and chaperonin tailless complex polypeptide 1 (CCT) 633730